Wall clock time and date at job start Fri Apr 10 2020 18:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.45671 * 2 1 4 4 C 1.53039 * 109.44946 * 119.96456 * 2 1 3 5 5 C 1.52760 * 109.38459 * 181.25588 * 4 2 1 6 6 N 1.46931 * 109.00543 * 305.58756 * 5 4 2 7 7 C 1.34777 * 120.63086 * 233.58109 * 6 5 4 8 8 O 1.21283 * 119.99750 * 179.72075 * 7 6 5 9 9 C 1.50702 * 119.99928 * 0.02562 * 7 6 5 10 10 N 1.46491 * 109.46957 * 179.72354 * 9 7 6 11 11 C 1.46765 * 124.35086 * 269.72151 * 10 9 7 12 12 C 1.54659 * 105.38585 * 162.85274 * 11 10 9 13 13 C 1.54632 * 101.68262 * 25.77064 * 12 11 10 14 14 C 1.34420 * 124.35410 * 90.02077 * 10 9 7 15 15 O 1.21285 * 124.93788 * 0.43144 * 14 10 9 16 16 C 1.46925 * 118.73924 * 53.31068 * 6 5 4 17 17 C 1.53042 * 109.45908 * 240.02841 * 2 1 3 18 18 H 1.08997 * 109.52427 * 298.59376 * 17 2 1 19 19 C 1.52997 * 109.49570 * 58.67934 * 17 2 1 20 20 N 1.46504 * 109.46594 * 184.83860 * 19 17 2 21 21 C 1.36941 * 119.99639 * 179.97438 * 20 19 17 22 22 H 1.07998 * 119.99939 * 359.97438 * 21 20 19 23 23 C 1.38812 * 119.99862 * 179.97438 * 21 20 19 24 24 N 1.31624 * 120.00134 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00290 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.46591 * 59.99950 * 25 23 21 27 27 H 1.48494 * 109.47213 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.46795 * 300.00394 * 25 23 21 29 29 H 1.08991 * 109.46924 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47047 * 299.97368 * 1 2 3 31 31 H 1.09004 * 109.46969 * 59.97273 * 1 2 3 32 32 H 1.09004 * 109.49958 * 301.33166 * 4 2 1 33 33 H 1.08994 * 109.49543 * 61.42671 * 4 2 1 34 34 H 1.08997 * 109.51122 * 185.71191 * 5 4 2 35 35 H 1.09000 * 109.43557 * 65.42042 * 5 4 2 36 36 H 1.09004 * 109.46965 * 299.72211 * 9 7 6 37 37 H 1.08994 * 109.46990 * 59.72065 * 9 7 6 38 38 H 1.08999 * 110.24825 * 281.98575 * 11 10 9 39 39 H 1.09001 * 110.24332 * 43.98219 * 11 10 9 40 40 H 1.08989 * 111.19648 * 267.59399 * 12 11 10 41 41 H 1.09003 * 110.81877 * 143.77370 * 12 11 10 42 42 H 1.08997 * 110.48383 * 216.30634 * 13 12 11 43 43 H 1.09006 * 110.59810 * 93.71587 * 13 12 11 44 44 H 1.09005 * 109.58470 * 66.42378 * 16 6 5 45 45 H 1.08995 * 109.58817 * 186.71135 * 16 6 5 46 46 H 1.09000 * 109.46815 * 304.83059 * 19 17 2 47 47 H 1.09000 * 109.47746 * 64.83772 * 19 17 2 48 48 H 0.97001 * 120.00480 * 359.97438 * 20 19 17 49 49 H 0.96999 * 119.99914 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0396 -0.7208 1.2502 5 6 3.5669 -0.6926 1.2646 6 7 4.0677 -1.2493 0.0004 7 6 4.9611 -2.2584 0.0005 8 8 5.3629 -2.7126 -1.0498 9 6 5.4554 -2.8269 1.3057 10 7 6.4062 -3.9088 1.0381 11 6 6.0338 -5.3206 0.8893 12 6 7.2432 -5.9934 0.1990 13 6 8.4034 -5.0638 0.6241 14 6 7.7325 -3.7369 0.9030 15 8 8.3076 -2.6728 0.9921 16 6 3.5714 -0.6890 -1.2640 17 6 2.0399 -0.7209 -1.2500 18 1 1.6977 -1.7557 -1.2388 19 6 1.5031 -0.0189 -2.4990 20 7 1.8953 -0.7752 -3.6908 21 6 1.5246 -0.3354 -4.9335 22 1 0.9428 0.5688 -5.0349 23 6 1.8967 -1.0517 -6.0628 24 7 2.6053 -2.1539 -5.9392 25 14 1.3904 -0.4522 -7.7580 26 1 1.9514 0.9029 -7.9917 27 1 1.9092 -1.3866 -8.7889 28 1 -0.0912 -0.3956 -7.8410 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5134 0.8902 31 1 -0.3633 0.5143 -0.8898 32 1 1.6570 -0.2206 2.1399 33 1 1.6974 -1.7555 1.2384 34 1 3.9342 -1.2911 2.0982 35 1 3.9097 0.3365 1.3718 36 1 5.9493 -2.0428 1.8796 37 1 4.6117 -3.2171 1.8748 38 1 5.8565 -5.7690 1.8669 39 1 5.1452 -5.4124 0.2647 40 1 7.1252 -5.9996 -0.8845 41 1 7.3936 -7.0038 0.5793 42 1 9.1272 -4.9628 -0.1846 43 1 8.8884 -5.4426 1.5238 44 1 3.9145 0.3405 -1.3670 45 1 3.9438 -1.2835 -2.0982 46 1 0.4158 0.0367 -2.4455 47 1 1.9161 0.9883 -2.5556 48 1 2.4176 -1.5875 -3.5997 49 1 2.8656 -2.6543 -6.7283 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132617757.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:46 Heat of formation + Delta-G solvation = -85.424715 kcal Electronic energy + Delta-G solvation = -28534.270240 eV Core-core repulsion = 24688.171448 eV Total energy + Delta-G solvation = -3846.098793 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.80382 -40.89875 -39.12810 -37.43330 -36.65126 -35.13032 -33.91005 -33.50520 -31.55528 -29.71655 -28.50949 -28.47187 -26.89874 -24.98504 -24.32738 -22.82792 -22.59994 -21.59722 -20.72818 -19.85034 -19.17863 -18.47768 -17.86612 -17.39558 -16.78404 -16.74184 -16.63002 -16.01060 -15.62549 -15.48390 -15.32065 -15.04780 -14.77329 -14.63966 -14.49005 -14.28492 -14.11937 -14.09008 -13.79074 -13.40945 -13.14562 -13.06907 -13.00123 -12.75989 -12.66073 -12.60580 -12.32697 -12.23032 -12.02709 -11.93062 -11.92454 -11.78886 -11.36970 -11.21478 -11.04115 -10.94202 -10.92229 -9.77477 -9.67995 -9.02633 -7.96993 -5.27543 1.35848 1.42595 1.47210 1.52780 1.53411 1.85693 2.17895 2.53267 3.35722 3.39675 3.44875 3.61383 3.68277 3.79506 3.83766 4.03944 4.05606 4.10394 4.16143 4.17728 4.23183 4.28153 4.39624 4.56237 4.59737 4.63226 4.69368 4.73328 4.79493 4.82082 4.86852 4.94469 4.96425 5.05076 5.08120 5.13173 5.21199 5.22741 5.25768 5.38821 5.44366 5.45923 5.54185 5.57982 6.03322 6.23478 6.37801 7.03499 7.13904 7.28785 8.05573 8.27664 9.26382 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.010981 B = 0.003560 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.306753 B = 7864.250893 C = 9785.213959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 H 0.079 0.921 4 C -0.120 4.120 5 C 0.097 3.903 6 N -0.607 5.607 7 C 0.479 3.521 8 O -0.587 6.587 9 C 0.114 3.886 10 N -0.608 5.608 11 C 0.098 3.902 12 C -0.124 4.124 13 C -0.146 4.146 14 C 0.504 3.496 15 O -0.588 6.588 16 C 0.128 3.872 17 C -0.084 4.084 18 H 0.053 0.947 19 C 0.156 3.844 20 N -0.748 5.748 21 C -0.249 4.249 22 H 0.079 0.921 23 C -0.078 4.078 24 N -0.973 5.973 25 Si 0.977 3.023 26 H -0.277 1.277 27 H -0.296 1.296 28 H -0.273 1.273 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.046 0.954 32 H 0.114 0.886 33 H 0.066 0.934 34 H 0.118 0.882 35 H 0.083 0.917 36 H 0.121 0.879 37 H 0.156 0.844 38 H 0.116 0.884 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.130 0.870 42 H 0.095 0.905 43 H 0.136 0.864 44 H 0.061 0.939 45 H 0.045 0.955 46 H 0.035 0.965 47 H 0.018 0.982 48 H 0.369 0.631 49 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.323 -4.979 26.407 26.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.099 4.099 3 H 0.097 0.903 4 C -0.158 4.158 5 C -0.024 4.024 6 N -0.340 5.340 7 C 0.267 3.733 8 O -0.466 6.466 9 C -0.012 4.012 10 N -0.339 5.339 11 C -0.023 4.023 12 C -0.162 4.162 13 C -0.186 4.186 14 C 0.294 3.706 15 O -0.468 6.468 16 C 0.004 3.996 17 C -0.104 4.104 18 H 0.072 0.928 19 C 0.029 3.971 20 N -0.391 5.391 21 C -0.381 4.381 22 H 0.097 0.903 23 C -0.270 4.270 24 N -0.623 5.623 25 Si 0.805 3.195 26 H -0.203 1.203 27 H -0.222 1.222 28 H -0.199 1.199 29 H 0.067 0.933 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.133 0.867 33 H 0.085 0.915 34 H 0.136 0.864 35 H 0.101 0.899 36 H 0.139 0.861 37 H 0.173 0.827 38 H 0.134 0.866 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.148 0.852 42 H 0.114 0.886 43 H 0.154 0.846 44 H 0.080 0.920 45 H 0.064 0.936 46 H 0.053 0.947 47 H 0.036 0.964 48 H 0.201 0.799 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.681 -4.505 25.827 26.354 hybrid contribution 0.050 0.166 -2.009 2.017 sum 2.731 -4.339 23.818 24.364 Atomic orbital electron populations 1.21847 0.94146 1.01823 1.02331 1.21106 0.96546 0.99512 0.92768 0.90262 1.21907 0.93971 1.01686 0.98255 1.22115 0.95293 1.00825 0.84146 1.48315 1.42498 1.34906 1.08286 1.22118 0.78684 0.79566 0.92890 1.90745 1.58842 1.61289 1.35757 1.21438 0.95353 0.91707 0.92717 1.48103 1.06589 1.09096 1.70157 1.22452 0.98898 0.78209 1.02746 1.22663 0.91982 1.00535 1.01019 1.22358 0.99298 0.91513 1.05441 1.21812 0.83126 0.91634 0.74022 1.90674 1.69809 1.32783 1.53583 1.21327 0.94370 0.97784 0.86096 1.21534 0.93397 0.99650 0.95796 0.92837 1.20935 0.97214 0.93735 0.85170 1.42672 1.65092 1.29265 1.02038 1.19648 1.26964 1.06368 0.85077 0.90349 1.25662 1.01457 0.97931 1.01975 1.69868 1.44194 1.19014 1.29238 0.85161 0.78100 0.77118 0.79082 1.20342 1.22225 1.19856 0.93272 0.90086 0.93526 0.86733 0.91523 0.86438 0.89853 0.86137 0.82704 0.86608 0.91445 0.91840 0.85152 0.88612 0.84623 0.92044 0.93641 0.94677 0.96363 0.79919 0.94114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.81 71.98 0.63 -2.29 16 2 C -0.08 -1.74 2.23 -10.76 -0.02 -1.77 16 3 H 0.08 1.64 8.14 -2.38 -0.02 1.63 16 4 C -0.12 -1.73 5.34 30.53 0.16 -1.57 16 5 C 0.10 1.51 6.32 86.22 0.54 2.05 16 6 N -0.61 -17.06 2.98 -819.72 -2.44 -19.50 16 7 C 0.48 15.32 7.77 87.66 0.68 16.00 16 8 O -0.59 -26.32 15.84 -3.04 -0.05 -26.37 16 9 C 0.11 2.31 4.76 85.64 0.41 2.72 16 10 N -0.61 -13.73 2.42 -821.98 -1.99 -15.72 16 11 C 0.10 1.48 7.35 86.89 0.64 2.12 16 12 C -0.12 -1.70 7.19 31.72 0.23 -1.48 16 13 C -0.15 -2.51 6.86 30.59 0.21 -2.30 16 14 C 0.50 13.81 8.02 87.90 0.70 14.52 16 15 O -0.59 -21.69 17.59 -3.04 -0.05 -21.74 16 16 C 0.13 4.67 5.52 86.36 0.48 5.15 16 17 C -0.08 -2.79 1.92 -10.72 -0.02 -2.81 16 18 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 19 C 0.16 6.47 5.41 86.38 0.47 6.93 16 20 N -0.75 -40.90 5.38 -343.44 -1.85 -42.75 16 21 C -0.25 -14.71 9.99 84.03 0.84 -13.87 16 22 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 23 C -0.08 -4.76 5.50 84.86 0.47 -4.30 16 24 N -0.97 -63.92 13.06 21.65 0.28 -63.63 16 25 Si 0.98 48.37 29.55 68.60 2.03 50.40 16 26 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 27 H -0.30 -14.76 7.11 99.48 0.71 -14.06 16 28 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 29 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 1.11 6.30 -2.38 -0.02 1.10 16 32 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.12 0.97 5.93 -2.39 -0.01 0.95 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.12 2.22 7.73 -2.38 -0.02 2.20 16 37 H 0.16 1.61 7.68 -2.39 -0.02 1.59 16 38 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.14 1.42 8.14 -2.38 -0.02 1.40 16 44 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 45 H 0.04 2.20 6.21 -2.39 -0.01 2.18 16 46 H 0.04 1.42 6.15 -2.39 -0.01 1.41 16 47 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.37 22.18 6.89 -92.71 -0.64 21.54 16 49 H 0.25 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -92.21 386.29 2.65 -89.56 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: 0.30 Total: 30.65 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: 6.42 Total: 19.11 kcal Atomic # 7 Polarization: -135.61 SS G_CDS: -5.99 Total: -141.60 kcal Atomic # 8 Polarization: -48.01 SS G_CDS: -0.10 Total: -48.12 kcal Atomic # 14 Polarization: 48.37 SS G_CDS: 2.03 Total: 50.40 kcal Total: -92.21 2.65 -89.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132617757.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.135 kcal (2) G-P(sol) polarization free energy of solvation -92.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds