Wall clock time and date at job start Fri Apr 10 2020 18:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 H 1.09004 * 109.44476 * 2 1 4 4 C 1.53039 * 109.45626 * 240.03619 * 2 1 3 5 5 C 1.53192 * 109.31189 * 301.33970 * 4 2 1 6 6 N 1.46920 * 108.77624 * 305.36679 * 5 4 2 7 7 C 1.34783 * 120.63354 * 233.58561 * 6 5 4 8 8 O 1.21275 * 119.99914 * 180.02562 * 7 6 5 9 9 C 1.50700 * 119.99600 * 0.02562 * 7 6 5 10 10 N 1.46498 * 109.46769 * 179.97438 * 9 7 6 11 11 C 1.34777 * 119.99828 * 179.72341 * 10 9 7 12 12 O 1.21283 * 120.00222 * 0.28168 * 11 10 9 13 13 C 1.50703 * 120.00290 * 180.27728 * 11 10 9 14 14 C 1.52994 * 117.49943 * 248.75083 * 13 11 10 15 15 C 1.52991 * 117.50225 * 180.09120 * 13 11 10 16 16 C 1.46925 * 118.73784 * 53.86271 * 6 5 4 17 17 C 1.53039 * 109.45896 * 119.96662 * 2 1 3 18 18 H 1.09006 * 109.49349 * 178.64317 * 17 2 1 19 19 C 1.52999 * 109.49635 * 298.70151 * 17 2 1 20 20 N 1.46503 * 109.46864 * 185.00370 * 19 17 2 21 21 C 1.36935 * 119.99693 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00296 * 0.02562 * 21 20 19 23 23 C 1.38813 * 119.99549 * 179.97438 * 21 20 19 24 24 N 1.31621 * 120.00556 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99963 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.46839 * 0.02562 * 25 23 21 27 27 H 1.48494 * 109.47474 * 120.00214 * 25 23 21 28 28 H 1.48502 * 109.47332 * 240.00688 * 25 23 21 29 29 H 1.08998 * 109.46439 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46949 * 299.96365 * 1 2 3 31 31 H 1.08994 * 109.46935 * 59.96567 * 1 2 3 32 32 H 1.09005 * 109.49321 * 181.39217 * 4 2 1 33 33 H 1.09002 * 109.52961 * 61.31208 * 4 2 1 34 34 H 1.09004 * 109.58597 * 185.57899 * 5 4 2 35 35 H 1.08996 * 109.58729 * 65.15904 * 5 4 2 36 36 H 1.09004 * 109.47210 * 60.00194 * 9 7 6 37 37 H 1.08994 * 109.47121 * 300.00164 * 9 7 6 38 38 H 0.97001 * 120.00384 * 0.02562 * 10 9 7 39 39 H 1.09000 * 115.54637 * 34.42075 * 13 11 10 40 40 H 1.09005 * 117.50098 * 359.97438 * 14 13 11 41 41 H 1.09004 * 117.49838 * 145.01994 * 14 13 11 42 42 H 1.08998 * 117.50043 * 214.98404 * 15 13 11 43 43 H 1.09006 * 117.50115 * 359.97334 * 15 13 11 44 44 H 1.09004 * 109.58821 * 65.92733 * 16 6 5 45 45 H 1.08998 * 109.58591 * 186.35034 * 16 6 5 46 46 H 1.08997 * 109.47095 * 305.00345 * 19 17 2 47 47 H 1.08992 * 109.46865 * 65.00391 * 19 17 2 48 48 H 0.96997 * 119.99824 * 0.02562 * 20 19 17 49 49 H 0.96999 * 120.00202 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0279 0.0000 4 6 2.0399 -0.7207 -1.2501 5 6 1.4996 -2.1541 -1.2642 6 7 1.8627 -2.8088 -0.0001 7 6 2.5158 -3.9878 0.0000 8 8 2.8095 -4.5183 1.0503 9 6 2.8811 -4.6468 -1.3052 10 7 3.5796 -5.9064 -1.0375 11 6 3.9993 -6.6751 -2.0619 12 8 3.8033 -6.3215 -3.2053 13 6 4.7123 -7.9739 -1.7866 14 6 6.1980 -8.0536 -2.1432 15 6 5.1658 -8.8002 -2.9917 16 6 1.4948 -2.1569 1.2642 17 6 2.0399 -0.7208 1.2501 18 1 3.1297 -0.7422 1.2386 19 6 1.5570 0.0194 2.4990 20 7 2.1425 -0.5998 3.6906 21 6 1.8519 -0.1031 4.9332 22 1 1.1908 0.7449 5.0348 23 6 2.4064 -0.6902 6.0623 24 7 3.2117 -1.7239 5.9386 25 14 2.0095 -0.0131 7.7575 26 1 1.0863 1.1426 7.6252 27 1 1.3630 -1.0714 8.5743 28 1 3.2631 0.4275 8.4205 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5132 0.8903 31 1 -0.3633 0.5143 -0.8896 32 1 3.1296 -0.7427 -1.2384 33 1 1.6963 -0.1936 -2.1402 34 1 1.9382 -2.7017 -2.0985 35 1 0.4147 -2.1347 -1.3673 36 1 3.5322 -3.9851 -1.8766 37 1 1.9752 -4.8476 -1.8769 38 1 3.7361 -6.1894 -0.1229 39 1 4.3772 -8.5158 -0.9022 40 1 6.6597 -7.1668 -2.5773 41 1 6.8403 -8.6484 -1.4936 42 1 5.1293 -9.8857 -2.9001 43 1 4.9480 -8.4046 -3.9838 44 1 0.4094 -2.1377 1.3632 45 1 1.9302 -2.7063 2.0988 46 1 1.8642 1.0638 2.4439 47 1 0.4701 -0.0369 2.5571 48 1 2.7366 -1.3611 3.5993 49 1 3.5994 -2.1338 6.7276 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132691498.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:58 Heat of formation + Delta-G solvation = -38.920947 kcal Electronic energy + Delta-G solvation = -27859.845787 eV Core-core repulsion = 24015.763549 eV Total energy + Delta-G solvation = -3844.082238 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.69863 -39.92661 -38.24422 -36.44547 -35.01758 -34.59948 -33.60544 -31.90181 -30.02515 -28.88760 -27.50498 -25.52311 -24.83451 -23.70393 -23.14734 -22.72936 -21.24215 -20.46898 -19.86164 -18.35506 -17.86218 -17.09330 -16.78752 -16.47934 -16.02563 -15.51028 -15.30528 -15.00928 -14.90174 -14.68611 -14.26409 -14.23107 -13.62264 -13.57191 -13.26041 -13.02233 -12.83939 -12.71104 -12.57953 -12.45174 -11.95931 -11.87406 -11.68813 -11.27898 -11.10693 -10.94607 -10.92801 -10.84176 -10.82133 -10.67834 -10.30628 -10.22780 -10.14828 -9.99046 -9.79338 -9.60323 -9.39324 -8.85813 -8.55194 -6.89036 -5.72456 -3.02074 2.23692 2.51742 2.59511 3.16454 3.45091 3.50206 3.52846 3.55994 4.24804 4.40571 4.49620 4.57287 4.58438 4.65951 4.79156 4.83983 4.88037 5.07898 5.09265 5.13254 5.22192 5.28918 5.29234 5.45760 5.49678 5.59014 5.62701 5.63976 5.65996 5.77376 5.80165 5.85508 5.91646 5.99793 6.07407 6.11880 6.29243 6.32092 6.33003 6.52026 6.57970 6.75479 6.87454 7.27110 7.35436 7.72791 7.96499 8.07493 8.45293 9.56458 10.14293 10.48373 11.49888 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.012690 B = 0.002856 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.877225 B = 9800.981944 C =11700.565050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 H 0.074 0.926 4 C -0.129 4.129 5 C 0.101 3.899 6 N -0.604 5.604 7 C 0.505 3.495 8 O -0.528 6.528 9 C 0.102 3.898 10 N -0.713 5.713 11 C 0.546 3.454 12 O -0.546 6.546 13 C -0.195 4.195 14 C -0.152 4.152 15 C -0.148 4.148 16 C 0.120 3.880 17 C -0.102 4.102 18 H 0.074 0.926 19 C 0.160 3.840 20 N -0.733 5.733 21 C -0.241 4.241 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.929 5.929 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.415 0.585 39 H 0.127 0.873 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.070 0.930 45 H 0.104 0.896 46 H 0.021 0.979 47 H 0.023 0.977 48 H 0.384 0.616 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.424 -7.489 -21.098 22.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 H 0.093 0.907 4 C -0.167 4.167 5 C -0.022 4.022 6 N -0.338 5.338 7 C 0.291 3.709 8 O -0.404 6.404 9 C -0.025 4.025 10 N -0.367 5.367 11 C 0.333 3.667 12 O -0.424 6.424 13 C -0.216 4.216 14 C -0.189 4.189 15 C -0.185 4.185 16 C -0.002 4.002 17 C -0.121 4.121 18 H 0.092 0.908 19 C 0.032 3.968 20 N -0.378 5.378 21 C -0.372 4.372 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.578 5.578 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.253 0.747 39 H 0.144 0.856 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.126 0.874 44 H 0.089 0.911 45 H 0.122 0.878 46 H 0.039 0.961 47 H 0.041 0.959 48 H 0.219 0.781 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.497 -7.400 -21.194 22.454 hybrid contribution -0.001 0.142 1.473 1.480 sum -0.498 -7.258 -19.721 21.020 Atomic orbital electron populations 1.21994 0.95189 1.01973 1.01881 1.21083 0.96047 0.99462 0.93850 0.90737 1.21946 1.01243 0.94901 0.98640 1.21853 1.00759 0.94023 0.85515 1.48104 1.56785 1.20655 1.08216 1.20416 0.78159 0.81483 0.90805 1.90767 1.53551 1.63167 1.32900 1.21105 0.99026 0.86840 0.95569 1.45686 1.58758 1.21366 1.10937 1.19656 0.78111 0.84451 0.84487 1.90687 1.57011 1.73262 1.21433 1.22162 0.99284 0.97181 1.02951 1.22968 0.89610 1.03335 1.02999 1.22969 1.01458 0.98399 0.95665 1.21888 0.99960 0.93006 0.85302 1.21765 1.00858 0.94278 0.95221 0.90782 1.20683 0.95990 0.94756 0.85354 1.42425 1.56808 1.37721 1.00834 1.19242 1.23201 1.10976 0.83768 0.91190 1.24757 1.00054 0.98323 0.97824 1.69682 1.35449 1.24257 1.28395 0.86142 0.77388 0.77961 0.84830 1.20607 1.21888 1.21911 0.92464 0.91742 0.93080 0.91414 0.90653 0.90030 0.90670 0.88499 0.88536 0.74668 0.85553 0.88181 0.87591 0.87856 0.87402 0.91138 0.87810 0.96144 0.95915 0.78150 0.93552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.12 37.16 0.30 -1.33 16 2 C -0.09 -0.99 2.71 -90.57 -0.25 -1.24 16 3 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.13 -1.20 5.63 -26.61 -0.15 -1.35 16 5 C 0.10 0.94 5.87 -3.71 -0.02 0.91 16 6 N -0.60 -7.83 2.97 -172.51 -0.51 -8.35 16 7 C 0.50 7.09 7.77 -10.98 -0.09 7.00 16 8 O -0.53 -9.59 15.08 5.56 0.08 -9.50 16 9 C 0.10 1.13 4.50 -5.19 -0.02 1.10 16 10 N -0.71 -8.13 5.53 -61.47 -0.34 -8.47 16 11 C 0.55 6.34 7.61 -10.98 -0.08 6.26 16 12 O -0.55 -7.84 16.26 5.55 0.09 -7.75 16 13 C -0.19 -1.69 6.19 -91.78 -0.57 -2.26 16 14 C -0.15 -1.13 10.24 -26.70 -0.27 -1.40 16 15 C -0.15 -1.12 10.05 -26.70 -0.27 -1.39 16 16 C 0.12 1.91 5.07 -3.49 -0.02 1.89 16 17 C -0.10 -1.59 2.16 -90.28 -0.20 -1.78 16 18 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 19 C 0.16 3.13 5.18 -4.04 -0.02 3.11 16 20 N -0.73 -18.62 5.38 -59.91 -0.32 -18.94 16 21 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 22 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 24 N -0.93 -28.70 13.06 55.49 0.72 -27.98 16 25 Si 0.91 22.68 29.55 -169.99 -5.02 17.65 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 29 H 0.06 0.61 4.97 -51.93 -0.26 0.35 16 30 H 0.06 0.77 6.57 -51.93 -0.34 0.43 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.60 5.93 -51.93 -0.31 0.29 16 35 H 0.08 0.62 6.69 -51.93 -0.35 0.27 16 36 H 0.10 0.99 7.69 -51.93 -0.40 0.59 16 37 H 0.10 0.95 7.94 -51.93 -0.41 0.54 16 38 H 0.42 4.75 7.44 -40.82 -0.30 4.45 16 39 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.11 0.95 7.67 -51.93 -0.40 0.55 16 44 H 0.07 1.09 6.69 -51.93 -0.35 0.74 16 45 H 0.10 2.10 6.23 -51.93 -0.32 1.78 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.02 0.44 6.73 -51.93 -0.35 0.09 16 48 H 0.38 10.46 6.92 -40.82 -0.28 10.18 16 49 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 384.75 15.07 5.80 5.80 Total: -1.00 -34.55 384.75 -9.24 -43.79 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -7.84 Total: 11.64 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -1.90 Total: 2.10 kcal Atomic # 7 Polarization: -63.28 SS G_CDS: -0.45 Total: -63.73 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: 0.17 Total: -17.25 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.55 -9.24 -43.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132691498.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.871 kcal (2) G-P(sol) polarization free energy of solvation -34.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds