Wall clock time and date at job start Fri Apr 10 2020 18:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 H 1.09004 * 109.44476 * 2 1 4 4 C 1.53039 * 109.45626 * 240.03619 * 2 1 3 5 5 C 1.53192 * 109.31189 * 301.33970 * 4 2 1 6 6 N 1.46920 * 108.77624 * 305.36679 * 5 4 2 7 7 C 1.34783 * 120.63354 * 233.58561 * 6 5 4 8 8 O 1.21275 * 119.99914 * 180.02562 * 7 6 5 9 9 C 1.50700 * 119.99600 * 0.02562 * 7 6 5 10 10 N 1.46498 * 109.46769 * 179.97438 * 9 7 6 11 11 C 1.34777 * 119.99828 * 179.72341 * 10 9 7 12 12 O 1.21283 * 120.00222 * 0.28168 * 11 10 9 13 13 C 1.50703 * 120.00290 * 180.27728 * 11 10 9 14 14 C 1.52994 * 117.49943 * 248.75083 * 13 11 10 15 15 C 1.52991 * 117.50225 * 180.09120 * 13 11 10 16 16 C 1.46925 * 118.73784 * 53.86271 * 6 5 4 17 17 C 1.53039 * 109.45896 * 119.96662 * 2 1 3 18 18 H 1.09006 * 109.49349 * 178.64317 * 17 2 1 19 19 C 1.52999 * 109.49635 * 298.70151 * 17 2 1 20 20 N 1.46503 * 109.46864 * 185.00370 * 19 17 2 21 21 C 1.36935 * 119.99693 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00296 * 0.02562 * 21 20 19 23 23 C 1.38813 * 119.99549 * 179.97438 * 21 20 19 24 24 N 1.31621 * 120.00556 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99963 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.46839 * 0.02562 * 25 23 21 27 27 H 1.48494 * 109.47474 * 120.00214 * 25 23 21 28 28 H 1.48502 * 109.47332 * 240.00688 * 25 23 21 29 29 H 1.08998 * 109.46439 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46949 * 299.96365 * 1 2 3 31 31 H 1.08994 * 109.46935 * 59.96567 * 1 2 3 32 32 H 1.09005 * 109.49321 * 181.39217 * 4 2 1 33 33 H 1.09002 * 109.52961 * 61.31208 * 4 2 1 34 34 H 1.09004 * 109.58597 * 185.57899 * 5 4 2 35 35 H 1.08996 * 109.58729 * 65.15904 * 5 4 2 36 36 H 1.09004 * 109.47210 * 60.00194 * 9 7 6 37 37 H 1.08994 * 109.47121 * 300.00164 * 9 7 6 38 38 H 0.97001 * 120.00384 * 0.02562 * 10 9 7 39 39 H 1.09000 * 115.54637 * 34.42075 * 13 11 10 40 40 H 1.09005 * 117.50098 * 359.97438 * 14 13 11 41 41 H 1.09004 * 117.49838 * 145.01994 * 14 13 11 42 42 H 1.08998 * 117.50043 * 214.98404 * 15 13 11 43 43 H 1.09006 * 117.50115 * 359.97334 * 15 13 11 44 44 H 1.09004 * 109.58821 * 65.92733 * 16 6 5 45 45 H 1.08998 * 109.58591 * 186.35034 * 16 6 5 46 46 H 1.08997 * 109.47095 * 305.00345 * 19 17 2 47 47 H 1.08992 * 109.46865 * 65.00391 * 19 17 2 48 48 H 0.96997 * 119.99824 * 0.02562 * 20 19 17 49 49 H 0.96999 * 120.00202 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0279 0.0000 4 6 2.0399 -0.7207 -1.2501 5 6 1.4996 -2.1541 -1.2642 6 7 1.8627 -2.8088 -0.0001 7 6 2.5158 -3.9878 0.0000 8 8 2.8095 -4.5183 1.0503 9 6 2.8811 -4.6468 -1.3052 10 7 3.5796 -5.9064 -1.0375 11 6 3.9993 -6.6751 -2.0619 12 8 3.8033 -6.3215 -3.2053 13 6 4.7123 -7.9739 -1.7866 14 6 6.1980 -8.0536 -2.1432 15 6 5.1658 -8.8002 -2.9917 16 6 1.4948 -2.1569 1.2642 17 6 2.0399 -0.7208 1.2501 18 1 3.1297 -0.7422 1.2386 19 6 1.5570 0.0194 2.4990 20 7 2.1425 -0.5998 3.6906 21 6 1.8519 -0.1031 4.9332 22 1 1.1908 0.7449 5.0348 23 6 2.4064 -0.6902 6.0623 24 7 3.2117 -1.7239 5.9386 25 14 2.0095 -0.0131 7.7575 26 1 1.0863 1.1426 7.6252 27 1 1.3630 -1.0714 8.5743 28 1 3.2631 0.4275 8.4205 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5132 0.8903 31 1 -0.3633 0.5143 -0.8896 32 1 3.1296 -0.7427 -1.2384 33 1 1.6963 -0.1936 -2.1402 34 1 1.9382 -2.7017 -2.0985 35 1 0.4147 -2.1347 -1.3673 36 1 3.5322 -3.9851 -1.8766 37 1 1.9752 -4.8476 -1.8769 38 1 3.7361 -6.1894 -0.1229 39 1 4.3772 -8.5158 -0.9022 40 1 6.6597 -7.1668 -2.5773 41 1 6.8403 -8.6484 -1.4936 42 1 5.1293 -9.8857 -2.9001 43 1 4.9480 -8.4046 -3.9838 44 1 0.4094 -2.1377 1.3632 45 1 1.9302 -2.7063 2.0988 46 1 1.8642 1.0638 2.4439 47 1 0.4701 -0.0369 2.5571 48 1 2.7366 -1.3611 3.5993 49 1 3.5994 -2.1338 6.7276 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132691498.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:58 Heat of formation + Delta-G solvation = -63.356009 kcal Electronic energy + Delta-G solvation = -27860.905371 eV Core-core repulsion = 24015.763549 eV Total energy + Delta-G solvation = -3845.141822 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.75331 -40.85919 -39.39063 -37.15575 -36.66787 -35.57667 -34.95853 -33.49714 -31.63020 -29.88106 -28.61482 -27.01391 -25.85296 -24.94002 -24.49235 -23.30398 -22.59578 -21.35986 -20.99731 -19.51185 -18.94430 -18.75219 -17.86094 -17.44996 -17.03575 -16.80652 -16.49401 -16.17848 -15.98249 -15.72221 -15.50914 -15.38749 -15.00496 -14.82205 -14.60272 -14.25427 -14.13996 -13.77492 -13.60296 -13.52931 -13.05463 -12.94755 -12.89202 -12.64888 -12.44594 -12.43440 -12.12112 -12.00923 -11.91334 -11.74589 -11.56137 -11.48436 -11.39995 -11.23898 -11.05573 -10.95348 -10.93459 -10.31594 -9.65426 -9.00704 -7.95301 -5.25324 1.36271 1.43363 1.45015 1.46587 1.56633 1.62164 2.23380 2.54637 2.91341 3.27292 3.37802 3.65350 3.71087 3.79981 3.84747 3.85105 3.98636 4.06583 4.16076 4.19049 4.20736 4.27749 4.29320 4.39042 4.51242 4.57252 4.70410 4.74407 4.77524 4.83050 4.90698 4.91915 4.97181 5.01953 5.10239 5.15470 5.19396 5.23463 5.26838 5.30761 5.39742 5.46093 5.49144 5.61067 6.25655 6.28618 6.37451 6.96651 7.07343 7.31283 8.07874 8.29756 9.28260 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.012690 B = 0.002856 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.877225 B = 9800.981944 C =11700.565050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.080 4.080 3 H 0.079 0.921 4 C -0.123 4.123 5 C 0.095 3.905 6 N -0.600 5.600 7 C 0.501 3.499 8 O -0.579 6.579 9 C 0.110 3.890 10 N -0.715 5.715 11 C 0.544 3.456 12 O -0.577 6.577 13 C -0.208 4.208 14 C -0.146 4.146 15 C -0.143 4.143 16 C 0.130 3.870 17 C -0.089 4.089 18 H 0.050 0.950 19 C 0.159 3.841 20 N -0.748 5.748 21 C -0.243 4.243 22 H 0.079 0.921 23 C -0.079 4.079 24 N -0.971 5.971 25 Si 0.975 3.025 26 H -0.263 1.263 27 H -0.294 1.294 28 H -0.294 1.294 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.414 0.586 39 H 0.143 0.857 40 H 0.090 0.910 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.093 0.907 44 H 0.076 0.924 45 H 0.052 0.948 46 H 0.022 0.978 47 H 0.031 0.969 48 H 0.370 0.630 49 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.393 -6.890 -23.230 24.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.099 4.099 3 H 0.097 0.903 4 C -0.161 4.161 5 C -0.026 4.026 6 N -0.332 5.332 7 C 0.289 3.711 8 O -0.459 6.459 9 C -0.017 4.017 10 N -0.369 5.369 11 C 0.332 3.668 12 O -0.457 6.457 13 C -0.229 4.229 14 C -0.183 4.183 15 C -0.180 4.180 16 C 0.007 3.993 17 C -0.109 4.109 18 H 0.069 0.931 19 C 0.032 3.968 20 N -0.390 5.390 21 C -0.375 4.375 22 H 0.096 0.904 23 C -0.271 4.271 24 N -0.622 5.622 25 Si 0.804 3.196 26 H -0.187 1.187 27 H -0.221 1.221 28 H -0.221 1.221 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.113 0.887 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.252 0.748 39 H 0.161 0.839 40 H 0.109 0.891 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.111 0.889 44 H 0.094 0.906 45 H 0.071 0.929 46 H 0.040 0.960 47 H 0.049 0.951 48 H 0.202 0.798 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.505 -6.744 -23.382 24.382 hybrid contribution 0.271 0.008 2.074 2.092 sum -1.235 -6.736 -21.308 22.381 Atomic orbital electron populations 1.21966 0.93992 1.02182 1.02530 1.21074 0.96937 0.99336 0.92580 0.90284 1.21947 1.00871 0.94773 0.98534 1.22233 1.02282 0.94048 0.84077 1.48156 1.56087 1.20357 1.08586 1.20986 0.77393 0.81463 0.91254 1.90748 1.55604 1.64584 1.34937 1.21136 1.00101 0.86814 0.93620 1.45786 1.58636 1.21497 1.10966 1.20134 0.77649 0.85098 0.83879 1.90664 1.58392 1.74195 1.22445 1.22262 1.00090 0.96213 1.04313 1.23068 0.89083 1.03199 1.02945 1.23041 1.00923 0.99553 0.94475 1.21507 0.99666 0.92679 0.85467 1.21617 0.99354 0.94227 0.95719 0.93097 1.20872 0.96010 0.94812 0.85079 1.42680 1.56830 1.37524 1.02000 1.19691 1.22241 1.10585 0.85010 0.90360 1.25637 1.00624 0.99032 1.01851 1.69865 1.37218 1.26050 1.29036 0.85047 0.77160 0.77588 0.79802 1.18712 1.22141 1.22075 0.92453 0.93402 0.90147 0.92103 0.87038 0.87359 0.88708 0.87083 0.86600 0.74785 0.83899 0.89127 0.85470 0.85518 0.88894 0.90609 0.92938 0.95969 0.95135 0.79788 0.94133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 8.12 71.99 0.58 -2.18 16 2 C -0.08 -1.69 2.71 -10.76 -0.03 -1.72 16 3 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 4 C -0.12 -1.88 5.63 30.67 0.17 -1.71 16 5 C 0.09 1.45 5.87 86.36 0.51 1.96 16 6 N -0.60 -15.24 2.97 -818.09 -2.43 -17.67 16 7 C 0.50 14.20 7.77 87.66 0.68 14.88 16 8 O -0.58 -22.24 15.08 -3.01 -0.05 -22.29 16 9 C 0.11 2.31 4.50 85.63 0.39 2.70 16 10 N -0.72 -16.09 5.53 -466.79 -2.58 -18.67 16 11 C 0.54 12.30 7.61 87.66 0.67 12.97 16 12 O -0.58 -16.16 16.26 -3.04 -0.05 -16.21 16 13 C -0.21 -3.40 6.19 -11.54 -0.07 -3.47 16 14 C -0.15 -1.96 10.24 30.61 0.31 -1.65 16 15 C -0.14 -1.97 10.05 30.61 0.31 -1.66 16 16 C 0.13 4.26 5.07 86.51 0.44 4.70 16 17 C -0.09 -2.83 2.16 -10.57 -0.02 -2.85 16 18 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 19 C 0.16 6.30 5.18 86.38 0.45 6.75 16 20 N -0.75 -39.36 5.38 -343.46 -1.85 -41.21 16 21 C -0.24 -13.97 9.99 84.03 0.84 -13.13 16 22 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 23 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 24 N -0.97 -62.19 13.06 21.65 0.28 -61.91 16 25 Si 0.98 47.39 29.55 68.60 2.03 49.42 16 26 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 27 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 28 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 29 H 0.06 1.06 4.97 -2.39 -0.01 1.05 16 30 H 0.05 1.05 6.57 -2.39 -0.02 1.03 16 31 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.11 1.15 5.93 -2.39 -0.01 1.14 16 35 H 0.09 1.17 6.69 -2.39 -0.02 1.15 16 36 H 0.11 2.05 7.69 -2.38 -0.02 2.03 16 37 H 0.12 2.02 7.94 -2.39 -0.02 2.00 16 38 H 0.41 9.69 7.44 -92.71 -0.69 9.00 16 39 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.13 1.17 8.14 -2.38 -0.02 1.15 16 42 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.09 1.58 7.67 -2.38 -0.02 1.57 16 44 H 0.08 2.37 6.69 -2.38 -0.02 2.36 16 45 H 0.05 2.29 6.23 -2.39 -0.01 2.28 16 46 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.03 1.18 6.73 -2.39 -0.02 1.17 16 48 H 0.37 21.38 6.92 -92.71 -0.64 20.74 16 49 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -78.88 384.75 0.69 -78.19 By element: Atomic # 1 Polarization: 39.36 SS G_CDS: -0.36 Total: 39.00 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 5.69 Total: 11.34 kcal Atomic # 7 Polarization: -132.89 SS G_CDS: -6.57 Total: -139.46 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -0.09 Total: -38.49 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -78.88 0.69 -78.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132691498.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.833 kcal (2) G-P(sol) polarization free energy of solvation -78.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds