Wall clock time and date at job start Fri Apr 10 2020 18:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21280 * 119.99708 * 2 1 4 4 N 1.34771 * 120.00008 * 179.97438 * 2 1 3 5 5 C 1.47583 * 134.49547 * 180.02562 * 4 2 1 6 6 C 1.53943 * 86.11689 * 155.35890 * 5 4 2 7 7 C 1.50699 * 113.73727 * 137.95407 * 6 5 4 8 8 O 1.21278 * 120.00488 * 1.92781 * 7 6 5 9 9 N 1.34782 * 119.99844 * 181.92479 * 7 6 5 10 10 C 1.46928 * 120.63146 * 359.97438 * 9 7 6 11 11 C 1.53187 * 108.77623 * 126.41312 * 10 9 7 12 12 C 1.53036 * 109.33909 * 54.61900 * 11 10 9 13 13 H 1.08998 * 109.46343 * 58.67009 * 12 11 10 14 14 C 1.52999 * 109.46209 * 178.63045 * 12 11 10 15 15 C 1.53042 * 109.54058 * 298.68652 * 12 11 10 16 16 H 1.09003 * 109.46473 * 301.36154 * 15 12 11 17 17 C 1.53008 * 109.52401 * 181.30039 * 15 12 11 18 18 N 1.46495 * 109.46899 * 175.10951 * 17 15 12 19 19 C 1.36940 * 119.99774 * 179.97438 * 18 17 15 20 20 H 1.07994 * 120.00286 * 0.02562 * 19 18 17 21 21 C 1.38811 * 119.99679 * 180.02562 * 19 18 17 22 22 N 1.31618 * 120.00300 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99734 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47048 * 89.99760 * 23 21 19 25 25 H 1.48496 * 109.46918 * 209.99509 * 23 21 19 26 26 H 1.48497 * 109.47502 * 329.99812 * 23 21 19 27 27 C 1.46927 * 120.63238 * 180.02562 * 9 7 6 28 28 C 1.47814 * 134.45382 * 359.86906 * 4 2 1 29 29 H 1.08997 * 109.47527 * 270.00308 * 1 2 3 30 30 H 1.09003 * 109.47017 * 30.00106 * 1 2 3 31 31 H 1.08995 * 109.47312 * 149.99909 * 1 2 3 32 32 H 1.09004 * 113.76591 * 41.05756 * 5 4 2 33 33 H 1.08999 * 113.76733 * 269.66620 * 5 4 2 34 34 H 1.08997 * 113.74352 * 269.15067 * 6 5 4 35 35 H 1.09000 * 109.58414 * 6.62478 * 10 9 7 36 36 H 1.09005 * 109.70435 * 246.27582 * 10 9 7 37 37 H 1.09002 * 109.49796 * 174.58834 * 11 10 9 38 38 H 1.09000 * 109.49812 * 294.65558 * 11 10 9 39 39 H 1.08997 * 109.46888 * 60.00237 * 14 12 11 40 40 H 1.09001 * 109.47188 * 180.02562 * 14 12 11 41 41 H 1.08996 * 109.47348 * 299.99872 * 14 12 11 42 42 H 1.08998 * 109.46620 * 295.11024 * 17 15 12 43 43 H 1.08996 * 109.46867 * 55.11028 * 17 15 12 44 44 H 0.97004 * 120.00394 * 0.02562 * 18 17 15 45 45 H 0.97001 * 120.00125 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.58621 * 353.37832 * 27 9 7 47 47 H 1.09003 * 109.58297 * 113.65397 * 27 9 7 48 48 H 1.09008 * 113.76786 * 90.38270 * 28 4 2 49 49 H 1.08997 * 113.84192 * 318.91717 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6097 -1.5366 0.0012 6 6 3.1591 -2.8619 0.6416 7 6 3.8592 -4.0742 0.0837 8 8 4.7162 -3.9429 -0.7643 9 7 3.5329 -5.3044 0.5272 10 6 2.4972 -5.4796 1.5545 11 6 1.4543 -6.4758 1.0384 12 6 2.1536 -7.7723 0.6235 13 1 2.6893 -8.1855 1.4781 14 6 1.1107 -8.7817 0.1395 15 6 3.1444 -7.4807 -0.5058 16 1 2.6129 -7.0451 -1.3519 17 6 3.8198 -8.7824 -0.9423 18 7 4.6801 -8.5221 -2.0992 19 6 5.3916 -9.5449 -2.6673 20 1 5.3182 -10.5436 -2.2628 21 6 6.2071 -9.2981 -3.7631 22 7 6.2961 -8.0811 -4.2565 23 14 7.1771 -10.6936 -4.5386 24 1 6.3614 -11.3318 -5.6028 25 1 8.4294 -10.1572 -5.1295 26 1 7.5115 -11.7009 -3.5001 27 6 4.2069 -6.4958 -0.0067 28 6 1.7847 -2.5912 0.0036 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8899 -0.5138 32 1 4.2231 -0.9181 0.6565 33 1 4.0340 -1.6524 -0.9962 34 1 3.1485 -2.8414 1.7314 35 1 2.0184 -4.5217 1.7576 36 1 2.9483 -5.8638 2.4694 37 1 0.7324 -6.6881 1.8270 38 1 0.9384 -6.0495 0.1780 39 1 0.5744 -8.3687 -0.7148 40 1 1.6086 -9.7054 -0.1555 41 1 0.4061 -8.9905 0.9445 42 1 4.4224 -9.1719 -0.1218 43 1 3.0583 -9.5137 -1.2130 44 1 4.7463 -7.6250 -2.4623 45 1 6.8657 -7.9088 -5.0225 46 1 4.8563 -6.2085 -0.8337 47 1 4.8009 -6.9625 0.7791 48 1 1.6714 -3.0178 -0.9931 49 1 0.9440 -2.8132 0.6607 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132773452.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:04 Heat of formation + Delta-G solvation = -28.475943 kcal Electronic energy + Delta-G solvation = -28314.530146 eV Core-core repulsion = 24470.900837 eV Total energy + Delta-G solvation = -3843.629309 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.14987 -39.73576 -38.33429 -37.24004 -35.03723 -33.74464 -31.97534 -31.43026 -29.93962 -29.19234 -28.04291 -26.50743 -25.76151 -24.07930 -23.26241 -22.50616 -21.27665 -19.91198 -19.33091 -18.90037 -17.69365 -17.27596 -16.99701 -16.32039 -15.88257 -15.42424 -15.14481 -14.88081 -14.61369 -14.44091 -13.93738 -13.62246 -13.55593 -13.36471 -13.22878 -13.15242 -12.91908 -12.90919 -12.62434 -12.58445 -12.47496 -12.16895 -11.91074 -11.79196 -11.54629 -11.35758 -11.02717 -10.89845 -10.82956 -10.64135 -10.33042 -10.20689 -10.20391 -9.97273 -9.69660 -9.58206 -9.03466 -8.85210 -8.57058 -6.88455 -5.71790 -3.01533 2.30160 2.44129 2.52463 2.99118 3.45707 3.50448 3.52839 3.91902 4.09157 4.33267 4.52980 4.60334 4.64502 4.70600 4.78995 4.83868 4.85376 4.90180 5.03805 5.09541 5.15375 5.21127 5.28838 5.32229 5.37949 5.55031 5.58641 5.59770 5.62976 5.67040 5.74334 5.77999 5.84091 5.90830 5.98214 6.13772 6.19780 6.28571 6.40662 6.53114 6.58071 6.78385 6.86595 7.32691 7.41933 7.72645 7.84625 8.16701 8.45961 9.57027 10.14856 10.48704 11.50443 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.014450 B = 0.002999 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.278644 B = 9333.252892 C =10635.179584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.534 3.466 3 O -0.547 6.547 4 N -0.648 5.648 5 C 0.128 3.872 6 C -0.150 4.150 7 C 0.520 3.480 8 O -0.522 6.522 9 N -0.607 5.607 10 C 0.106 3.894 11 C -0.129 4.129 12 C -0.085 4.085 13 H 0.071 0.929 14 C -0.148 4.148 15 C -0.101 4.101 16 H 0.074 0.926 17 C 0.158 3.842 18 N -0.733 5.733 19 C -0.242 4.242 20 H 0.069 0.931 21 C -0.012 4.012 22 N -0.929 5.929 23 Si 0.905 3.095 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.119 3.881 28 C 0.120 3.880 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.124 0.876 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.065 0.935 41 H 0.049 0.951 42 H 0.018 0.982 43 H 0.027 0.973 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.104 0.896 47 H 0.066 0.934 48 H 0.095 0.905 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.222 9.101 16.034 24.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.325 3.675 3 O -0.424 6.424 4 N -0.385 5.385 5 C 0.006 3.994 6 C -0.172 4.172 7 C 0.306 3.694 8 O -0.397 6.397 9 N -0.341 5.341 10 C -0.017 4.017 11 C -0.167 4.167 12 C -0.104 4.104 13 H 0.089 0.911 14 C -0.205 4.205 15 C -0.120 4.120 16 H 0.092 0.908 17 C 0.030 3.970 18 N -0.378 5.378 19 C -0.373 4.373 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.577 5.577 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.003 4.003 28 C -0.004 4.004 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.122 0.878 34 H 0.142 0.858 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.036 0.964 43 H 0.044 0.956 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.123 0.877 47 H 0.084 0.916 48 H 0.113 0.887 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.470 9.794 15.535 24.011 hybrid contribution 0.486 -0.666 -0.548 0.990 sum -14.983 9.127 14.987 23.074 Atomic orbital electron populations 1.21840 0.91197 1.04924 1.04710 1.20512 0.90246 0.81631 0.75156 1.90740 1.70860 1.30411 1.50386 1.50122 1.09230 1.05289 1.73836 1.23064 0.83247 0.90648 1.02429 1.23338 0.97129 0.94221 1.02505 1.20136 0.83220 0.83808 0.82273 1.90804 1.31998 1.85460 1.31451 1.48182 1.38990 1.06381 1.40501 1.21755 0.89131 0.99960 0.90869 1.21987 0.97435 0.95816 1.01445 1.21089 0.96210 0.94811 0.98271 0.91074 1.21879 0.98328 0.99649 1.00663 1.21715 0.95804 0.97042 0.97472 0.90788 1.20721 0.92742 0.92962 0.90536 1.42413 1.52366 1.09811 1.33177 1.19185 1.19066 0.89894 1.09173 0.91272 1.24752 1.00695 0.96455 0.98973 1.69668 1.42863 1.18762 1.26447 0.86219 0.79540 0.81340 0.79240 1.21786 1.21786 1.20813 1.21771 0.94770 0.83682 1.00035 1.23208 0.96099 0.79406 1.01646 0.88842 0.88739 0.90208 0.89377 0.87843 0.85778 0.90213 0.91237 0.90825 0.91410 0.92772 0.91617 0.93237 0.96438 0.95551 0.78136 0.93476 0.87749 0.91564 0.88681 0.88969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 10.14 36.01 0.37 -0.69 16 2 C 0.53 5.88 8.17 -10.99 -0.09 5.79 16 3 O -0.55 -8.54 17.83 5.56 0.10 -8.44 16 4 N -0.65 -6.37 3.61 -178.23 -0.64 -7.02 16 5 C 0.13 1.39 8.17 -2.97 -0.02 1.36 16 6 C -0.15 -1.32 2.88 -90.86 -0.26 -1.58 16 7 C 0.52 6.76 7.23 -10.98 -0.08 6.68 16 8 O -0.52 -9.51 15.32 5.56 0.09 -9.43 16 9 N -0.61 -7.21 2.97 -172.74 -0.51 -7.72 16 10 C 0.11 0.80 6.31 -3.71 -0.02 0.78 16 11 C -0.13 -1.00 5.36 -26.62 -0.14 -1.14 16 12 C -0.08 -0.90 2.23 -90.58 -0.20 -1.11 16 13 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 14 C -0.15 -1.54 8.82 37.16 0.33 -1.22 16 15 C -0.10 -1.50 1.92 -90.48 -0.17 -1.67 16 16 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 17 C 0.16 3.02 5.41 -4.04 -0.02 3.00 16 18 N -0.73 -18.38 5.38 -59.91 -0.32 -18.70 16 19 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -28.65 13.06 55.49 0.72 -27.92 16 23 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 C 0.12 1.83 5.52 -3.69 -0.02 1.81 16 28 C 0.12 0.85 7.47 -2.85 -0.02 0.83 16 29 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.37 7.84 -51.93 -0.41 -0.04 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.10 1.31 7.43 -51.93 -0.39 0.93 16 34 H 0.12 0.79 7.56 -51.93 -0.39 0.40 16 35 H 0.08 0.40 5.44 -51.93 -0.28 0.11 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.78 6.30 -51.93 -0.33 0.45 16 41 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.03 0.51 6.15 -51.93 -0.32 0.19 16 44 H 0.38 10.35 6.89 -40.82 -0.28 10.07 16 45 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 46 H 0.10 2.08 6.21 -51.93 -0.32 1.76 16 47 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.10 0.75 8.09 -51.92 -0.42 0.33 16 49 H 0.09 0.36 7.97 -51.93 -0.41 -0.05 16 LS Contribution 387.89 15.07 5.85 5.85 Total: -1.00 -36.47 387.89 -8.53 -45.00 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -8.17 Total: 5.32 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -0.61 Total: 5.48 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: -0.75 Total: -61.37 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: 0.18 Total: -17.87 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.47 -8.53 -45.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132773452.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.527 kcal (2) G-P(sol) polarization free energy of solvation -36.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds