Wall clock time and date at job start Fri Apr 10 2020 18:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 120.00525 * 2 1 4 4 O 1.21281 * 119.99569 * 354.62412 * 3 2 1 5 5 C 1.50693 * 120.00246 * 174.62341 * 3 2 1 6 6 C 1.50703 * 115.54838 * 294.26680 * 5 3 2 7 7 O 1.21280 * 120.00042 * 100.17677 * 6 5 3 8 8 N 1.34777 * 120.00071 * 280.17964 * 6 5 3 9 9 C 1.46934 * 120.62940 * 356.20159 * 8 6 5 10 10 C 1.53195 * 108.77409 * 126.39099 * 9 8 6 11 11 C 1.53037 * 109.31199 * 54.63728 * 10 9 8 12 12 H 1.09007 * 109.45792 * 178.61513 * 11 10 9 13 13 C 1.52998 * 109.46327 * 58.63777 * 11 10 9 14 14 C 1.53043 * 109.53820 * 298.63063 * 11 10 9 15 15 H 1.09004 * 109.50027 * 301.38487 * 14 11 10 16 16 C 1.53000 * 109.49806 * 181.31752 * 14 11 10 17 17 N 1.46499 * 109.46979 * 175.00085 * 16 14 11 18 18 C 1.36937 * 120.00143 * 180.02562 * 17 16 14 19 19 H 1.08006 * 119.99663 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00623 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99418 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00350 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47507 * 89.99796 * 22 20 18 24 24 H 1.48501 * 109.47032 * 209.99802 * 22 20 18 25 25 H 1.48496 * 109.46961 * 329.99457 * 22 20 18 26 26 C 1.46929 * 120.63470 * 176.19942 * 8 6 5 27 27 C 1.52996 * 117.51980 * 79.96448 * 5 3 2 28 28 C 1.52995 * 117.49974 * 148.59863 * 5 3 2 29 29 H 1.09001 * 109.47160 * 299.99945 * 1 2 3 30 30 H 1.09003 * 109.47077 * 59.99331 * 1 2 3 31 31 H 1.08997 * 109.47914 * 179.97438 * 1 2 3 32 32 H 0.97006 * 119.99165 * 180.02562 * 2 1 3 33 33 H 1.08998 * 109.58388 * 6.60340 * 9 8 6 34 34 H 1.09001 * 109.58509 * 246.17614 * 9 8 6 35 35 H 1.08998 * 109.49598 * 174.58893 * 10 9 8 36 36 H 1.08996 * 109.49796 * 294.64871 * 10 9 8 37 37 H 1.09005 * 109.47081 * 60.00293 * 13 11 10 38 38 H 1.08994 * 109.47176 * 179.97438 * 13 11 10 39 39 H 1.08996 * 109.46858 * 300.00131 * 13 11 10 40 40 H 1.08996 * 109.47436 * 294.99985 * 16 14 11 41 41 H 1.09003 * 109.46955 * 55.00275 * 16 14 11 42 42 H 0.97000 * 120.00051 * 0.02562 * 17 16 14 43 43 H 0.97002 * 119.99500 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.58092 * 113.81757 * 26 8 6 45 45 H 1.09004 * 109.58424 * 353.39779 * 26 8 6 46 46 H 1.09004 * 117.50100 * 214.97004 * 27 5 3 47 47 H 1.09000 * 117.49968 * 359.97438 * 27 5 3 48 48 H 1.08998 * 117.49979 * 359.97095 * 28 5 3 49 49 H 1.09002 * 117.50082 * 144.97418 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5366 2.2151 -0.0984 5 6 3.6409 1.1699 0.1223 6 6 4.1871 0.6710 1.4353 7 8 4.6123 -0.4613 1.5242 8 7 4.2029 1.4831 2.5108 9 6 3.7686 2.8824 2.3987 10 6 2.6917 3.1505 3.4548 11 6 3.2304 2.7682 4.8353 12 1 2.4748 2.9811 5.5916 13 6 4.4925 3.5803 5.1328 14 6 3.5678 1.2756 4.8577 15 1 2.6746 0.6971 4.6219 16 6 4.0753 0.8876 6.2480 17 7 4.2848 -0.5612 6.3046 18 6 4.7395 -1.1428 7.4579 19 1 4.9440 -0.5332 8.3258 20 6 4.9385 -2.5155 7.5114 21 7 4.6897 -3.2582 6.4536 22 14 5.5581 -3.3088 9.0850 23 1 4.4020 -3.6937 9.9339 24 1 6.3509 -4.5190 8.7503 25 1 6.4139 -2.3446 9.8218 26 6 4.6546 0.9862 3.8176 27 6 4.4535 0.8724 -1.1395 28 6 4.4047 2.2951 -0.5786 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3635 -1.0276 -0.0005 32 1 1.9499 -0.8402 -0.0004 33 1 3.3576 3.0588 1.4047 34 1 4.6187 3.5434 2.5676 35 1 2.4297 4.2084 3.4467 36 1 1.8067 2.5548 3.2313 37 1 4.2523 4.6435 5.1181 38 1 4.8760 3.3085 6.1162 39 1 5.2479 3.3679 4.3763 40 1 5.0171 1.3989 6.4468 41 1 3.3390 1.1778 6.9976 42 1 4.1015 -1.1086 5.5250 43 1 4.8292 -4.2174 6.4909 44 1 5.5769 1.4927 4.1021 45 1 4.8282 -0.0884 3.7598 46 1 5.3831 0.3159 -1.0200 47 1 3.9017 0.6742 -2.0584 48 1 3.8208 3.0332 -1.1286 49 1 5.3020 2.6749 -0.0900 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133173197.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:17 Heat of formation + Delta-G solvation = -34.549269 kcal Electronic energy + Delta-G solvation = -29296.472576 eV Core-core repulsion = 25452.579908 eV Total energy + Delta-G solvation = -3843.892668 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.08270 -39.56756 -38.16016 -36.24186 -34.91645 -34.74838 -33.45590 -31.83931 -29.83324 -27.98544 -27.56797 -26.10794 -24.95517 -23.78184 -23.18769 -22.70947 -21.38779 -21.08698 -19.56736 -18.57294 -17.58691 -17.02060 -16.40342 -16.18224 -16.04196 -15.27977 -15.20405 -14.91410 -14.86182 -14.48109 -14.30365 -13.96286 -13.53726 -13.26957 -13.13712 -13.00215 -12.88881 -12.68211 -12.50717 -12.39628 -11.95219 -11.90115 -11.62799 -11.35495 -11.26424 -11.01245 -10.95179 -10.79932 -10.72508 -10.61615 -10.30673 -10.20643 -10.12284 -9.91949 -9.64109 -9.53209 -9.35992 -8.83328 -8.45643 -6.87189 -5.70839 -3.00248 2.14524 2.57610 2.84498 2.95121 3.46459 3.49098 3.51238 3.53347 4.26277 4.36123 4.47488 4.61091 4.61658 4.82938 4.92088 4.96018 5.02688 5.21208 5.25043 5.28637 5.32333 5.34810 5.49044 5.52980 5.56591 5.57607 5.62892 5.71230 5.76763 5.78079 5.84084 5.95872 6.00378 6.07526 6.13506 6.16153 6.36065 6.36847 6.39212 6.58284 6.64810 6.79354 6.91237 7.19962 7.45526 7.73903 7.92089 8.18004 8.47121 9.58116 10.16112 10.50400 11.51626 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.013947 B = 0.003661 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.136261 B = 7647.257613 C = 8405.856374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.725 5.725 3 C 0.562 3.438 4 O -0.530 6.530 5 C -0.194 4.194 6 C 0.552 3.448 7 O -0.520 6.520 8 N -0.599 5.599 9 C 0.100 3.900 10 C -0.125 4.125 11 C -0.086 4.086 12 H 0.073 0.927 13 C -0.152 4.152 14 C -0.101 4.101 15 H 0.071 0.929 16 C 0.161 3.839 17 N -0.733 5.733 18 C -0.241 4.241 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.930 5.930 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.120 3.880 27 C -0.130 4.130 28 C -0.135 4.135 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.409 0.591 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.050 0.950 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.024 0.976 41 H 0.021 0.979 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.070 0.930 45 H 0.102 0.898 46 H 0.113 0.887 47 H 0.107 0.893 48 H 0.113 0.887 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.637 14.096 -16.275 22.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.376 5.376 3 C 0.347 3.653 4 O -0.406 6.406 5 C -0.200 4.200 6 C 0.337 3.663 7 O -0.395 6.395 8 N -0.331 5.331 9 C -0.023 4.023 10 C -0.163 4.163 11 C -0.105 4.105 12 H 0.091 0.909 13 C -0.209 4.209 14 C -0.121 4.121 15 H 0.090 0.910 16 C 0.033 3.967 17 N -0.378 5.378 18 C -0.372 4.372 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.737 3.263 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.002 4.002 27 C -0.167 4.167 28 C -0.172 4.172 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.244 0.756 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.041 0.959 41 H 0.039 0.961 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.089 0.911 45 H 0.121 0.879 46 H 0.131 0.869 47 H 0.125 0.875 48 H 0.132 0.868 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.802 14.203 -16.096 21.997 hybrid contribution 0.317 -1.117 0.766 1.392 sum -4.485 13.086 -15.329 20.648 Atomic orbital electron populations 1.21590 0.79003 1.02691 1.02330 1.45742 1.07992 1.08936 1.74942 1.18992 0.86753 0.83856 0.75731 1.90700 1.69292 1.31427 1.49210 1.21438 0.92833 1.10340 0.95427 1.19012 0.78838 0.85101 0.83352 1.90784 1.46536 1.18488 1.83734 1.48104 1.64224 1.11459 1.09309 1.21923 0.97792 0.81767 1.00841 1.21889 0.98123 1.01548 0.94790 1.21091 0.97946 0.94923 0.96500 0.90857 1.21981 0.97624 0.98931 1.02381 1.21679 0.98762 0.95193 0.96432 0.91008 1.20681 0.97109 0.86923 0.92003 1.42418 1.80011 1.01042 1.14295 1.19205 1.36191 0.90642 0.91157 0.91249 1.24742 1.02444 0.96306 0.97391 1.69677 1.54940 1.05031 1.28238 0.86211 0.78298 0.78936 0.82868 1.21794 1.21791 1.20790 1.21802 0.96438 1.02208 0.79714 1.23103 1.01244 0.98669 0.93703 1.23137 1.01042 0.91919 1.01139 0.92033 0.92053 0.90280 0.75611 0.88978 0.91110 0.90847 0.91780 0.93103 0.91791 0.92476 0.95877 0.96144 0.78185 0.93526 0.91149 0.87939 0.86860 0.87486 0.86823 0.87299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.78 10.71 59.85 0.64 1.42 16 2 N -0.73 -7.91 5.71 -67.08 -0.38 -8.29 16 3 C 0.56 7.06 6.84 -10.99 -0.08 6.98 16 4 O -0.53 -7.68 16.07 5.56 0.09 -7.59 16 5 C -0.19 -2.28 1.14 -156.82 -0.18 -2.46 16 6 C 0.55 8.42 6.86 -10.98 -0.08 8.34 16 7 O -0.52 -9.94 16.42 5.56 0.09 -9.84 16 8 N -0.60 -8.67 2.97 -172.76 -0.51 -9.18 16 9 C 0.10 1.16 5.58 -3.70 -0.02 1.14 16 10 C -0.13 -1.47 5.63 -26.61 -0.15 -1.62 16 11 C -0.09 -1.11 2.71 -90.58 -0.25 -1.36 16 12 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 13 C -0.15 -1.78 8.11 37.16 0.30 -1.47 16 14 C -0.10 -1.68 2.15 -90.50 -0.19 -1.88 16 15 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 16 C 0.16 3.24 5.18 -4.04 -0.02 3.22 16 17 N -0.73 -18.90 5.38 -59.91 -0.32 -19.23 16 18 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 19 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -28.86 13.06 55.49 0.72 -28.14 16 22 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 C 0.12 2.03 5.04 -3.71 -0.02 2.01 16 27 C -0.13 -1.19 9.86 -26.73 -0.26 -1.46 16 28 C -0.13 -1.22 8.08 -26.73 -0.22 -1.43 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.41 4.16 8.84 -40.82 -0.36 3.80 16 33 H 0.09 1.05 4.47 -51.93 -0.23 0.82 16 34 H 0.07 0.72 6.69 -51.93 -0.35 0.37 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.81 6.57 -51.93 -0.34 0.47 16 39 H 0.06 0.66 4.98 -51.93 -0.26 0.41 16 40 H 0.02 0.46 6.73 -51.93 -0.35 0.11 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.38 10.60 6.90 -40.82 -0.28 10.32 16 43 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 44 H 0.07 1.15 6.69 -51.93 -0.35 0.80 16 45 H 0.10 2.15 6.24 -51.93 -0.32 1.83 16 46 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 47 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 48 H 0.11 0.95 8.00 -51.93 -0.42 0.53 16 49 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 383.81 15.07 5.78 5.78 Total: -1.00 -34.52 383.81 -8.19 -42.71 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -7.88 Total: 12.05 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -0.76 Total: 3.96 kcal Atomic # 7 Polarization: -64.34 SS G_CDS: -0.49 Total: -64.84 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: 0.18 Total: -17.44 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.52 -8.19 -42.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133173197.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.165 kcal (2) G-P(sol) polarization free energy of solvation -34.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds