Wall clock time and date at job start Fri Apr 10 2020 18:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 120.00525 * 2 1 4 4 O 1.21281 * 119.99569 * 354.62412 * 3 2 1 5 5 C 1.50693 * 120.00246 * 174.62341 * 3 2 1 6 6 C 1.50703 * 115.54838 * 294.26680 * 5 3 2 7 7 O 1.21280 * 120.00042 * 100.17677 * 6 5 3 8 8 N 1.34777 * 120.00071 * 280.17964 * 6 5 3 9 9 C 1.46934 * 120.62940 * 356.20159 * 8 6 5 10 10 C 1.53195 * 108.77409 * 126.39099 * 9 8 6 11 11 C 1.53037 * 109.31199 * 54.63728 * 10 9 8 12 12 H 1.09007 * 109.45792 * 178.61513 * 11 10 9 13 13 C 1.52998 * 109.46327 * 58.63777 * 11 10 9 14 14 C 1.53043 * 109.53820 * 298.63063 * 11 10 9 15 15 H 1.09004 * 109.50027 * 301.38487 * 14 11 10 16 16 C 1.53000 * 109.49806 * 181.31752 * 14 11 10 17 17 N 1.46499 * 109.46979 * 175.00085 * 16 14 11 18 18 C 1.36937 * 120.00143 * 180.02562 * 17 16 14 19 19 H 1.08006 * 119.99663 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00623 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99418 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00350 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47507 * 89.99796 * 22 20 18 24 24 H 1.48501 * 109.47032 * 209.99802 * 22 20 18 25 25 H 1.48496 * 109.46961 * 329.99457 * 22 20 18 26 26 C 1.46929 * 120.63470 * 176.19942 * 8 6 5 27 27 C 1.52996 * 117.51980 * 79.96448 * 5 3 2 28 28 C 1.52995 * 117.49974 * 148.59863 * 5 3 2 29 29 H 1.09001 * 109.47160 * 299.99945 * 1 2 3 30 30 H 1.09003 * 109.47077 * 59.99331 * 1 2 3 31 31 H 1.08997 * 109.47914 * 179.97438 * 1 2 3 32 32 H 0.97006 * 119.99165 * 180.02562 * 2 1 3 33 33 H 1.08998 * 109.58388 * 6.60340 * 9 8 6 34 34 H 1.09001 * 109.58509 * 246.17614 * 9 8 6 35 35 H 1.08998 * 109.49598 * 174.58893 * 10 9 8 36 36 H 1.08996 * 109.49796 * 294.64871 * 10 9 8 37 37 H 1.09005 * 109.47081 * 60.00293 * 13 11 10 38 38 H 1.08994 * 109.47176 * 179.97438 * 13 11 10 39 39 H 1.08996 * 109.46858 * 300.00131 * 13 11 10 40 40 H 1.08996 * 109.47436 * 294.99985 * 16 14 11 41 41 H 1.09003 * 109.46955 * 55.00275 * 16 14 11 42 42 H 0.97000 * 120.00051 * 0.02562 * 17 16 14 43 43 H 0.97002 * 119.99500 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.58092 * 113.81757 * 26 8 6 45 45 H 1.09004 * 109.58424 * 353.39779 * 26 8 6 46 46 H 1.09004 * 117.50100 * 214.97004 * 27 5 3 47 47 H 1.09000 * 117.49968 * 359.97438 * 27 5 3 48 48 H 1.08998 * 117.49979 * 359.97095 * 28 5 3 49 49 H 1.09002 * 117.50082 * 144.97418 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5366 2.2151 -0.0984 5 6 3.6409 1.1699 0.1223 6 6 4.1871 0.6710 1.4353 7 8 4.6123 -0.4613 1.5242 8 7 4.2029 1.4831 2.5108 9 6 3.7686 2.8824 2.3987 10 6 2.6917 3.1505 3.4548 11 6 3.2304 2.7682 4.8353 12 1 2.4748 2.9811 5.5916 13 6 4.4925 3.5803 5.1328 14 6 3.5678 1.2756 4.8577 15 1 2.6746 0.6971 4.6219 16 6 4.0753 0.8876 6.2480 17 7 4.2848 -0.5612 6.3046 18 6 4.7395 -1.1428 7.4579 19 1 4.9440 -0.5332 8.3258 20 6 4.9385 -2.5155 7.5114 21 7 4.6897 -3.2582 6.4536 22 14 5.5581 -3.3088 9.0850 23 1 4.4020 -3.6937 9.9339 24 1 6.3509 -4.5190 8.7503 25 1 6.4139 -2.3446 9.8218 26 6 4.6546 0.9862 3.8176 27 6 4.4535 0.8724 -1.1395 28 6 4.4047 2.2951 -0.5786 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3635 -1.0276 -0.0005 32 1 1.9499 -0.8402 -0.0004 33 1 3.3576 3.0588 1.4047 34 1 4.6187 3.5434 2.5676 35 1 2.4297 4.2084 3.4467 36 1 1.8067 2.5548 3.2313 37 1 4.2523 4.6435 5.1181 38 1 4.8760 3.3085 6.1162 39 1 5.2479 3.3679 4.3763 40 1 5.0171 1.3989 6.4468 41 1 3.3390 1.1778 6.9976 42 1 4.1015 -1.1086 5.5250 43 1 4.8292 -4.2174 6.4909 44 1 5.5769 1.4927 4.1021 45 1 4.8282 -0.0884 3.7598 46 1 5.3831 0.3159 -1.0200 47 1 3.9017 0.6742 -2.0584 48 1 3.8208 3.0332 -1.1286 49 1 5.3020 2.6749 -0.0900 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133173197.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:16 Heat of formation + Delta-G solvation = -59.352315 kcal Electronic energy + Delta-G solvation = -29297.548117 eV Core-core repulsion = 25452.579908 eV Total energy + Delta-G solvation = -3844.968209 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.14371 -40.65407 -39.36291 -37.18404 -36.63151 -35.68691 -34.85038 -33.52537 -31.54060 -28.92332 -28.58399 -27.59251 -26.22702 -24.97696 -24.73035 -23.49805 -22.61329 -22.36259 -20.65269 -19.79306 -18.98752 -18.66005 -17.53133 -17.20089 -17.03111 -16.80295 -16.38997 -16.21143 -15.88326 -15.72133 -15.51530 -15.28794 -15.12141 -14.60740 -14.52103 -14.14173 -14.07290 -13.84923 -13.79532 -13.20980 -13.05671 -13.03046 -12.87738 -12.67165 -12.61606 -12.47248 -12.26386 -12.16094 -12.07364 -11.91562 -11.77981 -11.65935 -11.44710 -11.26703 -11.08623 -10.93521 -10.75154 -10.24845 -9.66839 -9.01072 -7.94976 -5.25230 1.10110 1.45397 1.47972 1.49720 1.56488 1.81152 2.06107 2.55122 2.62582 3.27456 3.38184 3.51455 3.64455 3.69269 3.73028 3.80648 3.83498 4.03150 4.16903 4.24579 4.35051 4.37513 4.48501 4.54148 4.54915 4.56291 4.62334 4.67607 4.74595 4.79313 4.82635 4.85399 4.88611 4.96341 5.07701 5.08413 5.12587 5.22181 5.26310 5.28635 5.35893 5.44841 5.48517 5.57752 6.25683 6.27597 6.31985 6.98234 7.00562 7.31408 8.07079 8.29772 9.28599 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.013947 B = 0.003661 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.136261 B = 7647.257613 C = 8405.856374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.725 5.725 3 C 0.561 3.439 4 O -0.551 6.551 5 C -0.211 4.211 6 C 0.548 3.452 7 O -0.570 6.570 8 N -0.596 5.596 9 C 0.098 3.902 10 C -0.120 4.120 11 C -0.079 4.079 12 H 0.079 0.921 13 C -0.148 4.148 14 C -0.089 4.089 15 H 0.045 0.955 16 C 0.161 3.839 17 N -0.747 5.747 18 C -0.246 4.246 19 H 0.079 0.921 20 C -0.077 4.077 21 N -0.971 5.971 22 Si 0.975 3.025 23 H -0.286 1.286 24 H -0.296 1.296 25 H -0.266 1.266 26 C 0.129 3.871 27 C -0.120 4.120 28 C -0.115 4.115 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.411 0.589 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.045 0.955 37 H 0.080 0.920 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.033 0.967 41 H 0.023 0.977 42 H 0.370 0.630 43 H 0.250 0.750 44 H 0.079 0.921 45 H 0.054 0.946 46 H 0.108 0.892 47 H 0.127 0.873 48 H 0.127 0.873 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.566 16.740 -16.602 24.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.375 5.375 3 C 0.346 3.654 4 O -0.429 6.429 5 C -0.217 4.217 6 C 0.335 3.665 7 O -0.449 6.449 8 N -0.328 5.328 9 C -0.024 4.024 10 C -0.158 4.158 11 C -0.098 4.098 12 H 0.097 0.903 13 C -0.205 4.205 14 C -0.108 4.108 15 H 0.064 0.936 16 C 0.034 3.966 17 N -0.390 5.390 18 C -0.378 4.378 19 H 0.097 0.903 20 C -0.269 4.269 21 N -0.622 5.622 22 Si 0.804 3.196 23 H -0.213 1.213 24 H -0.223 1.223 25 H -0.191 1.191 26 C 0.007 3.993 27 C -0.157 4.157 28 C -0.152 4.152 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.121 0.879 32 H 0.246 0.754 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.124 0.876 36 H 0.063 0.937 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.051 0.949 41 H 0.041 0.959 42 H 0.202 0.798 43 H 0.059 0.941 44 H 0.097 0.903 45 H 0.072 0.928 46 H 0.126 0.874 47 H 0.145 0.855 48 H 0.145 0.855 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.750 16.917 -16.409 24.042 hybrid contribution 0.259 -1.902 0.862 2.105 sum -4.491 15.014 -15.547 22.075 Atomic orbital electron populations 1.21733 0.77885 1.04260 1.02013 1.45873 1.08903 1.08750 1.74022 1.19096 0.86970 0.83879 0.75486 1.90678 1.69700 1.32030 1.50510 1.21290 0.92651 1.13455 0.94312 1.19602 0.77954 0.84412 0.84522 1.90756 1.48778 1.20651 1.84728 1.48171 1.63688 1.12754 1.08146 1.22173 0.98754 0.80068 1.01363 1.21869 0.97208 1.03108 0.93571 1.21064 0.99096 0.91834 0.97790 0.90305 1.21951 0.96518 1.00352 1.01670 1.21522 0.97222 0.97899 0.94188 0.93634 1.20847 0.97545 0.83915 0.94247 1.42662 1.79903 1.03286 1.13150 1.19662 1.34935 0.91118 0.92042 0.90342 1.25622 1.03532 0.97033 1.00710 1.69864 1.56869 1.04887 1.30593 0.85110 0.77758 0.77748 0.78973 1.21335 1.22315 1.19095 1.21456 0.97017 0.99466 0.81376 1.23229 1.00543 0.98900 0.93034 1.23292 1.00616 0.91663 0.99639 0.93231 0.91380 0.87893 0.75378 0.88193 0.88582 0.87612 0.93656 0.90157 0.92942 0.92379 0.94874 0.95937 0.79829 0.94107 0.90333 0.92780 0.87376 0.85533 0.85471 0.86213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.46 10.71 127.77 1.37 2.83 16 2 N -0.73 -15.69 5.71 -484.53 -2.77 -18.45 16 3 C 0.56 13.66 6.84 87.66 0.60 14.26 16 4 O -0.55 -15.26 16.07 -3.03 -0.05 -15.31 16 5 C -0.21 -4.79 1.14 -53.68 -0.06 -4.85 16 6 C 0.55 17.04 6.86 87.66 0.60 17.64 16 7 O -0.57 -23.06 16.42 -3.03 -0.05 -23.11 16 8 N -0.60 -17.24 2.97 -818.87 -2.43 -19.67 16 9 C 0.10 2.05 5.58 86.36 0.48 2.53 16 10 C -0.12 -2.52 5.63 30.67 0.17 -2.34 16 11 C -0.08 -1.91 2.71 -10.77 -0.03 -1.93 16 12 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 13 C -0.15 -3.01 8.11 71.98 0.58 -2.42 16 14 C -0.09 -3.00 2.15 -10.72 -0.02 -3.02 16 15 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 16 C 0.16 6.56 5.18 86.38 0.45 7.01 16 17 N -0.75 -39.84 5.38 -343.45 -1.85 -41.68 16 18 C -0.25 -14.19 9.99 84.03 0.84 -13.35 16 19 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 20 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 21 N -0.97 -62.36 13.06 21.65 0.28 -62.08 16 22 Si 0.98 47.44 29.55 68.60 2.03 49.47 16 23 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 24 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 25 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 26 C 0.13 4.52 5.04 86.36 0.44 4.96 16 27 C -0.12 -2.03 9.86 30.59 0.30 -1.72 16 28 C -0.11 -1.79 8.08 30.59 0.25 -1.55 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.41 8.51 8.84 -92.70 -0.82 7.69 16 33 H 0.10 2.02 4.47 -2.39 -0.01 2.01 16 34 H 0.10 1.59 6.69 -2.39 -0.02 1.57 16 35 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 38 H 0.05 1.20 6.57 -2.39 -0.02 1.18 16 39 H 0.06 1.17 4.98 -2.39 -0.01 1.16 16 40 H 0.03 1.31 6.73 -2.39 -0.02 1.29 16 41 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.37 21.60 6.90 -92.71 -0.64 20.96 16 43 H 0.25 15.55 8.31 -92.71 -0.77 14.78 16 44 H 0.08 2.58 6.69 -2.39 -0.02 2.56 16 45 H 0.05 2.44 6.24 -2.39 -0.01 2.43 16 46 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.13 1.71 8.00 -2.39 -0.02 1.69 16 49 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -77.73 383.81 1.11 -76.61 By element: Atomic # 1 Polarization: 40.78 SS G_CDS: -0.49 Total: 40.30 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 6.43 Total: 13.93 kcal Atomic # 7 Polarization: -135.12 SS G_CDS: -6.76 Total: -141.88 kcal Atomic # 8 Polarization: -38.32 SS G_CDS: -0.10 Total: -38.42 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -77.73 1.11 -76.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133173197.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.262 kcal (2) G-P(sol) polarization free energy of solvation -77.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds