Wall clock time and date at job start Fri Apr 10 2020 18:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46942 * 2 1 4 4 H 1.08998 * 109.47382 * 55.00148 * 3 2 1 5 5 C 1.53010 * 109.47101 * 295.00109 * 3 2 1 6 6 C 1.50699 * 109.47432 * 175.00169 * 3 2 1 7 7 O 1.21290 * 119.99590 * 35.50300 * 6 3 2 8 8 N 1.34773 * 120.00302 * 215.51066 * 6 3 2 9 9 C 1.47885 * 134.34009 * 356.98473 * 8 6 3 10 10 C 1.52395 * 85.59192 * 156.48707 * 9 8 6 11 11 C 1.47884 * 134.34383 * 176.95220 * 8 6 3 12 12 C 1.53645 * 116.37530 * 141.33922 * 10 9 8 13 13 C 1.54600 * 102.81108 * 95.34518 * 12 10 9 14 14 N 1.47554 * 107.32551 * 20.84013 * 13 12 10 15 15 C 1.46905 * 110.99706 * 123.22155 * 14 13 12 16 16 C 1.50696 * 109.47155 * 69.87258 * 15 14 13 17 17 O 1.21286 * 120.00248 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99917 * 180.02562 * 16 15 14 19 19 C 1.37089 * 120.00210 * 180.02562 * 18 16 15 20 20 H 1.08007 * 120.00015 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00287 * 180.02562 * 19 18 16 22 22 N 1.31409 * 120.00172 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00009 * 359.97438 * 21 19 18 24 24 H 1.48494 * 109.47035 * 90.00095 * 23 21 19 25 25 H 1.48495 * 109.47307 * 210.00442 * 23 21 19 26 26 H 1.48501 * 109.46936 * 330.00309 * 23 21 19 27 27 C 1.48137 * 108.69395 * 0.87285 * 14 13 12 28 28 H 1.09003 * 109.47521 * 60.00125 * 1 2 3 29 29 H 1.09001 * 109.47226 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47359 * 299.99751 * 1 2 3 31 31 H 1.09003 * 109.46994 * 240.00379 * 2 1 3 32 32 H 1.08991 * 109.47066 * 119.99876 * 2 1 3 33 33 H 1.08996 * 109.46956 * 185.49198 * 5 3 2 34 34 H 1.09002 * 109.46681 * 305.48959 * 5 3 2 35 35 H 1.09000 * 109.46733 * 65.49363 * 5 3 2 36 36 H 1.08994 * 113.85727 * 42.32028 * 9 8 6 37 37 H 1.08998 * 113.96713 * 270.66166 * 9 8 6 38 38 H 1.08999 * 113.85338 * 89.34795 * 11 8 6 39 39 H 1.09001 * 113.85749 * 317.68719 * 11 8 6 40 40 H 1.09000 * 110.74585 * 337.01611 * 12 10 9 41 41 H 1.08996 * 110.89938 * 213.74235 * 12 10 9 42 42 H 1.09000 * 109.87262 * 261.40776 * 13 12 10 43 43 H 1.08992 * 109.87197 * 140.27586 * 13 12 10 44 44 H 1.09007 * 109.47198 * 189.87534 * 15 14 13 45 45 H 1.09003 * 109.47177 * 309.86962 * 15 14 13 46 46 H 0.97006 * 119.99964 * 359.97438 * 18 16 15 47 47 H 0.97000 * 120.00184 * 179.97438 * 22 21 19 48 48 H 1.08997 * 110.41087 * 96.33677 * 27 14 13 49 49 H 1.09003 * 110.40815 * 218.77473 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6351 2.1266 -1.3074 6 6 3.5419 1.4444 0.1238 7 8 4.1953 0.5727 -0.4093 8 7 4.1589 2.4147 0.8269 9 6 3.6995 3.6272 1.5381 10 6 4.9816 3.4932 2.3510 11 6 5.5645 2.6900 1.1947 12 6 5.7043 4.8017 2.7064 13 6 5.1695 5.1149 4.1227 14 7 4.6558 3.8523 4.6876 15 6 5.3173 3.5378 5.9611 16 6 4.8676 4.5157 7.0157 17 8 4.0737 5.3885 6.7345 18 7 5.3475 4.4204 8.2716 19 6 4.9380 5.3097 9.2312 20 1 4.2311 6.0869 8.9808 21 6 5.4331 5.2118 10.5258 22 7 5.0402 6.0639 11.4457 23 14 6.6563 3.8680 10.9588 24 1 8.0375 4.3646 10.7337 25 1 6.4924 3.4904 12.3856 26 1 6.4113 2.6806 10.1013 27 6 4.8658 2.7695 3.6987 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.0804 3.1205 -1.3504 34 1 1.9873 1.5339 -2.1517 35 1 0.5494 2.2126 -1.3514 36 1 2.7905 3.4787 2.1209 37 1 3.6647 4.5201 0.9139 38 1 6.1010 3.2952 0.4639 39 1 6.1196 1.8057 1.5079 40 1 5.4345 5.5938 2.0079 41 1 6.7844 4.6566 2.7249 42 1 4.3650 5.8478 4.0613 43 1 5.9763 5.4989 4.7468 44 1 5.0529 2.5256 6.2676 45 1 6.3978 3.6090 5.8365 46 1 5.9821 3.7221 8.4966 47 1 5.3856 5.9954 12.3496 48 1 5.7850 2.2268 3.9188 49 1 4.0139 2.0895 3.6930 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147009221.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:39 Heat of formation + Delta-G solvation = -57.464038 kcal Electronic energy + Delta-G solvation = -27718.983666 eV Core-core repulsion = 23874.097339 eV Total energy + Delta-G solvation = -3844.886327 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.05501 -40.52034 -39.78165 -37.60043 -36.32841 -35.90408 -33.74524 -32.75051 -30.98131 -29.88924 -28.99232 -27.40194 -27.01256 -25.97882 -25.16002 -22.41073 -22.16148 -21.19740 -20.44680 -19.95963 -19.53584 -18.17299 -17.67154 -17.33281 -16.85291 -16.72718 -16.50891 -16.10805 -15.83429 -15.55186 -15.25873 -15.07373 -14.69117 -14.50792 -14.37473 -14.22851 -14.13110 -13.81011 -13.50777 -13.34110 -13.24431 -13.04882 -12.94916 -12.78225 -12.64361 -12.55911 -12.41944 -12.39239 -12.01215 -11.97405 -11.86746 -11.72961 -11.64183 -11.48740 -11.42949 -10.61470 -10.38088 -10.22133 -9.76012 -9.17657 -8.39673 -5.99935 1.30740 1.35664 1.44605 1.58072 1.78699 1.99283 2.23721 2.61389 3.14699 3.16695 3.32470 3.43485 3.56500 3.72286 3.79926 3.96467 4.01899 4.19124 4.28675 4.32168 4.37516 4.43309 4.47228 4.48815 4.55832 4.58149 4.59785 4.63463 4.67971 4.72212 4.81272 4.87105 4.90747 4.94519 5.01453 5.03822 5.08215 5.15183 5.16412 5.31414 5.32218 5.44906 5.54565 5.92404 6.03430 6.10011 6.62122 6.65694 6.90990 7.11002 7.42631 8.00118 8.77999 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.020546 B = 0.002366 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.460789 B =11829.014558 C =12176.866697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.106 4.106 3 C -0.103 4.103 4 H 0.102 0.898 5 C -0.135 4.135 6 C 0.533 3.467 7 O -0.591 6.591 8 N -0.646 5.646 9 C 0.124 3.876 10 C -0.095 4.095 11 C 0.123 3.877 12 C -0.113 4.113 13 C 0.055 3.945 14 N -0.528 5.528 15 C 0.050 3.950 16 C 0.453 3.547 17 O -0.604 6.604 18 N -0.596 5.596 19 C -0.324 4.324 20 H 0.056 0.944 21 C -0.016 4.016 22 N -0.936 5.936 23 Si 0.963 3.037 24 H -0.257 1.257 25 H -0.277 1.277 26 H -0.232 1.232 27 C 0.071 3.929 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.060 0.940 43 H 0.037 0.963 44 H 0.113 0.887 45 H 0.081 0.919 46 H 0.388 0.612 47 H 0.278 0.722 48 H 0.067 0.933 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.018 -10.734 -24.691 26.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.144 4.144 3 C -0.124 4.124 4 H 0.120 0.880 5 C -0.192 4.192 6 C 0.324 3.676 7 O -0.472 6.472 8 N -0.380 5.380 9 C 0.002 3.998 10 C -0.097 4.097 11 C 0.001 3.999 12 C -0.152 4.152 13 C -0.072 4.072 14 N -0.252 5.252 15 C -0.082 4.082 16 C 0.241 3.759 17 O -0.487 6.487 18 N -0.238 5.238 19 C -0.453 4.453 20 H 0.074 0.926 21 C -0.215 4.215 22 N -0.577 5.577 23 Si 0.783 3.217 24 H -0.182 1.182 25 H -0.202 1.202 26 H -0.156 1.156 27 C -0.056 4.056 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.130 0.870 38 H 0.124 0.876 39 H 0.097 0.903 40 H 0.117 0.883 41 H 0.107 0.893 42 H 0.078 0.922 43 H 0.056 0.944 44 H 0.131 0.869 45 H 0.098 0.902 46 H 0.224 0.776 47 H 0.088 0.912 48 H 0.085 0.915 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.813 -10.627 -24.950 27.131 hybrid contribution 1.374 -0.336 0.994 1.729 sum 0.561 -10.963 -23.956 26.352 Atomic orbital electron populations 1.21796 0.93446 1.02523 1.02780 1.21365 0.97257 0.93899 1.01906 1.21330 0.89506 0.99560 1.01992 0.88026 1.21728 1.03297 0.99944 0.94268 1.20954 0.91120 0.79859 0.75637 1.90662 1.68617 1.39351 1.48579 1.50398 1.10513 1.24606 1.52493 1.23212 0.98065 0.86904 0.91589 1.22288 0.97029 0.96451 0.93906 1.23048 0.84526 0.98513 0.93837 1.22549 1.00646 0.96266 0.95701 1.22713 0.97917 0.91881 0.94715 1.63209 1.56729 1.03142 1.02145 1.22015 0.98132 0.98603 0.89428 1.20885 0.83875 0.87689 0.83493 1.90536 1.37800 1.39084 1.81327 1.42064 1.42581 1.30088 1.09066 1.18983 1.25678 1.10453 0.90230 0.92601 1.26090 1.00211 1.00615 0.94556 1.69802 1.45471 1.38537 1.03851 0.85385 0.78489 0.78745 0.79035 1.18168 1.20174 1.15560 1.22629 1.01523 0.93048 0.88427 0.91272 0.92056 0.92072 0.92276 0.93056 0.91962 0.92913 0.89208 0.89210 0.86985 0.87564 0.90273 0.88253 0.89257 0.92169 0.94408 0.86869 0.90151 0.77641 0.91230 0.91488 0.90370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.67 71.98 0.70 -1.05 16 2 C -0.11 -1.76 4.99 30.59 0.15 -1.61 16 3 C -0.10 -1.65 2.59 -11.54 -0.03 -1.68 16 4 H 0.10 1.38 7.49 -2.39 -0.02 1.36 16 5 C -0.13 -1.70 8.79 71.99 0.63 -1.07 16 6 C 0.53 11.79 7.05 87.66 0.62 12.41 16 7 O -0.59 -17.99 17.11 -3.06 -0.05 -18.04 16 8 N -0.65 -11.53 3.62 -863.38 -3.12 -14.65 16 9 C 0.12 1.74 7.69 85.91 0.66 2.40 16 10 C -0.10 -1.45 0.99 -52.15 -0.05 -1.51 16 11 C 0.12 1.83 8.21 85.91 0.71 2.54 16 12 C -0.11 -1.73 6.35 31.36 0.20 -1.53 16 13 C 0.06 1.45 5.67 86.72 0.49 1.94 16 14 N -0.53 -14.59 4.86 -891.49 -4.33 -18.92 16 15 C 0.05 1.48 5.03 85.55 0.43 1.91 16 16 C 0.45 20.04 7.43 87.66 0.65 20.69 16 17 O -0.60 -32.68 15.12 -3.05 -0.05 -32.72 16 18 N -0.60 -27.79 5.09 -306.99 -1.56 -29.35 16 19 C -0.32 -18.85 10.16 84.04 0.85 -17.99 16 20 H 0.06 3.87 7.39 -2.91 -0.02 3.85 16 21 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 22 N -0.94 -56.29 13.96 21.66 0.30 -55.98 16 23 Si 0.96 38.61 27.74 68.60 1.90 40.51 16 24 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 25 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 26 H -0.23 -7.84 6.52 99.48 0.65 -7.20 16 27 C 0.07 1.39 6.09 86.20 0.53 1.91 16 28 H 0.07 0.66 6.69 -2.39 -0.02 0.65 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 1.13 8.02 -2.39 -0.02 1.11 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.09 0.79 6.84 -2.39 -0.02 0.78 16 36 H 0.09 1.35 7.83 -2.39 -0.02 1.33 16 37 H 0.11 1.13 8.04 -2.39 -0.02 1.11 16 38 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.08 1.27 8.12 -2.39 -0.02 1.25 16 40 H 0.10 1.18 7.99 -2.39 -0.02 1.16 16 41 H 0.09 1.15 8.14 -2.39 -0.02 1.14 16 42 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.04 1.11 7.31 -2.39 -0.02 1.10 16 44 H 0.11 2.85 8.07 -2.38 -0.02 2.83 16 45 H 0.08 1.96 7.96 -2.39 -0.02 1.94 16 46 H 0.39 15.01 5.76 -92.70 -0.53 14.47 16 47 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 48 H 0.07 1.14 7.80 -2.39 -0.02 1.12 16 49 H 0.08 1.62 8.07 -2.39 -0.02 1.60 16 Total: -1.00 -81.16 391.24 0.44 -80.72 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: 0.34 Total: 31.51 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: 7.00 Total: 16.92 kcal Atomic # 7 Polarization: -110.19 SS G_CDS: -8.71 Total: -118.90 kcal Atomic # 8 Polarization: -50.67 SS G_CDS: -0.10 Total: -50.77 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 1.90 Total: 40.51 kcal Total: -81.16 0.44 -80.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147009221.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.261 kcal (2) G-P(sol) polarization free energy of solvation -81.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds