Wall clock time and date at job start Fri Apr 10 2020 18:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47603 * 2 1 4 4 C 1.50699 * 109.47025 * 179.97438 * 3 2 1 5 5 O 1.21285 * 120.00340 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99724 * 179.97438 * 4 3 2 7 7 C 1.46498 * 119.99823 * 180.02562 * 6 4 3 8 8 C 1.50703 * 109.47252 * 180.02562 * 7 6 4 9 9 O 1.21283 * 119.99757 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00058 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99996 * 179.97438 * 10 8 7 12 12 C 1.52992 * 109.47237 * 179.97438 * 11 10 8 13 13 C 1.50703 * 109.47299 * 180.02562 * 12 11 10 14 14 C 1.29451 * 117.69445 * 95.00025 * 13 12 11 15 15 C 1.50330 * 123.65007 * 181.14193 * 14 13 12 16 16 N 1.47132 * 109.10280 * 348.53955 * 15 14 13 17 17 C 1.36936 * 121.53492 * 223.15848 * 16 15 14 18 18 H 1.07997 * 120.00400 * 156.23953 * 17 16 15 19 19 C 1.38816 * 119.99772 * 336.23726 * 17 16 15 20 20 N 1.31620 * 119.99998 * 344.47294 * 19 17 16 21 21 Si 1.86801 * 119.99831 * 164.47294 * 19 17 16 22 22 H 1.48498 * 109.47091 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47086 * 119.99888 * 21 19 17 24 24 H 1.48500 * 109.46988 * 240.00040 * 21 19 17 25 25 C 1.47334 * 117.08742 * 43.37930 * 16 15 14 26 26 C 1.49968 * 117.69162 * 275.02169 * 13 12 11 27 27 H 1.08995 * 109.47801 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46761 * 300.00105 * 1 2 3 29 29 H 1.08996 * 109.46943 * 59.99925 * 1 2 3 30 30 H 1.09007 * 109.47114 * 239.99624 * 2 1 3 31 31 H 1.09010 * 109.46975 * 120.00376 * 2 1 3 32 32 H 1.09001 * 109.47148 * 60.00132 * 3 2 1 33 33 H 1.08996 * 109.47032 * 300.00021 * 3 2 1 34 34 H 0.96995 * 120.00446 * 0.02562 * 6 4 3 35 35 H 1.09007 * 109.47355 * 59.99802 * 7 6 4 36 36 H 1.09002 * 109.47541 * 300.00240 * 7 6 4 37 37 H 0.96997 * 120.00154 * 359.97438 * 10 8 7 38 38 H 1.09007 * 109.47130 * 59.99357 * 11 10 8 39 39 H 1.09002 * 109.47078 * 300.00217 * 11 10 8 40 40 H 1.08995 * 109.47291 * 60.00248 * 12 11 10 41 41 H 1.08996 * 109.47224 * 300.00018 * 12 11 10 42 42 H 1.07993 * 118.17889 * 0.85731 * 14 13 12 43 43 H 1.08999 * 109.52397 * 108.64692 * 15 14 13 44 44 H 1.09002 * 109.52075 * 228.83522 * 15 14 13 45 45 H 0.97003 * 119.99843 * 179.97438 * 20 19 17 46 46 H 1.09008 * 109.77605 * 178.39713 * 25 16 15 47 47 H 1.09005 * 109.78096 * 57.59157 * 25 16 15 48 48 H 1.08993 * 109.31804 * 281.28826 * 26 13 12 49 49 H 1.09003 * 109.31610 * 40.71757 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4423 0.0006 5 8 4.1535 0.3919 0.0006 6 7 4.2211 2.6095 0.0002 7 6 5.6860 2.6093 0.0003 8 6 6.1885 4.0301 0.0004 9 8 5.4005 4.9520 0.0000 10 7 7.5136 4.2763 -0.0001 11 6 8.0021 5.6574 -0.0005 12 6 9.5320 5.6573 -0.0003 13 6 10.0345 7.0781 -0.0002 14 6 10.3291 7.6119 1.1418 15 6 10.8170 9.0251 1.2996 16 7 11.1558 9.5683 -0.0251 17 6 12.2931 10.3035 -0.2282 18 1 12.7262 10.3668 -1.2155 19 6 12.8893 10.9676 0.8351 20 7 12.2211 11.1515 1.9541 21 14 14.6398 11.6004 0.6776 22 1 15.1670 11.2679 -0.6702 23 1 14.6524 13.0735 0.8651 24 1 15.4917 10.9623 1.7131 25 6 10.2150 9.2911 -1.1245 26 6 10.1574 7.7740 -1.3229 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.7362 3.4495 -0.0001 35 1 6.0494 2.0951 -0.8895 36 1 6.0494 2.0958 0.8904 37 1 8.1439 3.5390 -0.0001 38 1 7.6389 6.1716 0.8895 39 1 7.6385 6.1711 -0.8905 40 1 9.8954 5.1432 -0.8901 41 1 9.8952 5.1438 0.8898 42 1 10.2139 7.0100 2.0310 43 1 10.0351 9.6315 1.7567 44 1 11.7042 9.0355 1.9327 45 1 12.6379 11.6152 2.6972 46 1 10.5653 9.7696 -2.0392 47 1 9.2250 9.6672 -0.8665 48 1 11.0671 7.4410 -1.8223 49 1 9.2967 7.5240 -1.9432 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159465321.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:49 Heat of formation + Delta-G solvation = -56.057074 kcal Electronic energy + Delta-G solvation = -26135.462658 eV Core-core repulsion = 22290.637342 eV Total energy + Delta-G solvation = -3844.825316 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.53815 -39.54173 -37.95416 -35.69511 -34.96368 -34.60577 -33.65839 -31.50881 -30.09737 -29.65218 -28.65164 -27.04052 -25.16579 -23.12281 -22.57316 -22.20430 -21.11427 -20.78258 -20.62149 -18.15196 -17.62997 -16.89278 -16.57706 -16.43357 -15.97612 -15.88080 -15.41820 -15.10911 -14.77635 -14.41055 -14.15081 -13.99745 -13.71949 -13.60034 -13.43461 -13.32707 -13.03519 -12.65448 -12.36840 -12.23641 -12.19376 -12.05203 -11.62105 -11.60789 -11.45246 -11.16469 -11.05838 -10.93317 -10.75586 -10.41390 -10.29718 -10.29363 -10.15785 -9.82503 -9.58705 -9.56755 -9.30596 -8.67238 -7.95423 -6.74237 -5.79805 -3.18405 2.20396 2.29201 2.43469 2.87323 3.17342 3.36812 3.44448 3.46586 4.24767 4.37635 4.48474 4.48900 4.56742 4.88552 4.90089 5.03412 5.04790 5.07388 5.09750 5.19291 5.22545 5.32203 5.38650 5.51985 5.59613 5.62487 5.72609 5.73708 5.85001 5.92863 5.95028 5.98259 6.10109 6.16911 6.21394 6.37364 6.53549 6.77034 6.88697 7.08187 7.13451 7.21138 7.30999 7.38562 7.74293 7.80395 7.83712 7.86213 8.37916 9.19461 9.82340 10.41153 11.30634 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.046982 B = 0.001573 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.826535 B =17798.418143 C =17853.177320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.140 4.140 4 C 0.514 3.486 5 O -0.543 6.543 6 N -0.721 5.721 7 C 0.099 3.901 8 C 0.506 3.494 9 O -0.538 6.538 10 N -0.723 5.723 11 C 0.124 3.876 12 C -0.092 4.092 13 C -0.144 4.144 14 C -0.145 4.145 15 C 0.195 3.805 16 N -0.595 5.595 17 C -0.245 4.245 18 H 0.069 0.931 19 C -0.002 4.002 20 N -0.909 5.909 21 Si 0.904 3.096 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.142 3.858 26 C -0.091 4.091 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.413 0.587 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.403 0.597 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.091 0.909 43 H 0.038 0.962 44 H 0.091 0.909 45 H 0.253 0.747 46 H 0.056 0.944 47 H 0.023 0.977 48 H 0.062 0.938 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.964 -20.611 -3.637 27.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.180 4.180 4 C 0.301 3.699 5 O -0.420 6.420 6 N -0.376 5.376 7 C -0.029 4.029 8 C 0.291 3.709 9 O -0.415 6.415 10 N -0.374 5.374 11 C 0.001 3.999 12 C -0.130 4.130 13 C -0.145 4.145 14 C -0.164 4.164 15 C 0.070 3.930 16 N -0.319 5.319 17 C -0.374 4.374 18 H 0.087 0.913 19 C -0.200 4.200 20 N -0.555 5.555 21 Si 0.734 3.266 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.216 1.216 25 C 0.016 3.984 26 C -0.130 4.130 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.251 0.749 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.237 0.763 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.109 0.891 43 H 0.056 0.944 44 H 0.109 0.891 45 H 0.063 0.937 46 H 0.075 0.925 47 H 0.041 0.959 48 H 0.081 0.919 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.003 -20.567 -3.502 27.557 hybrid contribution 1.111 0.425 0.110 1.194 sum -16.891 -20.143 -3.392 26.506 Atomic orbital electron populations 1.21798 0.95362 1.02046 1.01900 1.21288 0.95373 0.94485 1.03595 1.21720 0.91052 1.00428 1.04798 1.20827 0.90592 0.83044 0.75405 1.90713 1.70561 1.31300 1.49467 1.45790 1.05932 1.10051 1.75862 1.21062 0.82518 0.94405 1.04890 1.20490 0.82993 0.90956 0.76462 1.90723 1.55148 1.45942 1.49667 1.46017 1.06552 1.10102 1.74767 1.21506 0.94347 0.81061 1.02989 1.20910 0.93003 0.96773 1.02282 1.20215 1.04226 0.94065 0.95955 1.23129 0.97550 0.99724 0.96029 1.19735 0.99416 0.85734 0.88066 1.44175 1.22724 1.60326 1.04628 1.19233 0.99919 1.22737 0.95518 0.91313 1.24988 0.99094 0.98484 0.97410 1.70026 1.35396 1.45099 1.04967 0.86187 0.84741 0.78162 0.77497 1.20315 1.21749 1.21625 1.20960 0.93198 0.91801 0.92484 1.20758 1.00031 0.98388 0.93827 0.92347 0.92604 0.92607 0.91210 0.91203 0.88625 0.88626 0.74905 0.88324 0.88327 0.76293 0.91052 0.91032 0.91360 0.91437 0.89068 0.94393 0.89085 0.93684 0.92536 0.95883 0.91923 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.91 37.16 0.37 -0.34 16 2 C -0.11 -0.68 5.22 -26.73 -0.14 -0.82 16 3 C -0.14 -0.80 5.70 -27.88 -0.16 -0.96 16 4 C 0.51 4.56 7.83 -10.98 -0.09 4.48 16 5 O -0.54 -6.67 15.98 5.55 0.09 -6.58 16 6 N -0.72 -5.95 5.53 -61.47 -0.34 -6.29 16 7 C 0.10 0.78 6.15 -5.19 -0.03 0.75 16 8 C 0.51 5.11 7.90 -10.98 -0.09 5.02 16 9 O -0.54 -7.38 15.67 5.55 0.09 -7.29 16 10 N -0.72 -6.51 5.56 -60.29 -0.33 -6.84 16 11 C 0.12 1.45 5.66 -4.05 -0.02 1.42 16 12 C -0.09 -1.10 5.32 -27.89 -0.15 -1.25 16 13 C -0.14 -2.39 5.11 -100.99 -0.52 -2.90 16 14 C -0.14 -2.73 9.47 -35.78 -0.34 -3.07 16 15 C 0.20 4.65 5.25 -5.03 -0.03 4.63 16 16 N -0.60 -14.94 3.01 -173.56 -0.52 -15.46 16 17 C -0.24 -6.71 9.71 -15.06 -0.15 -6.85 16 18 H 0.07 1.85 7.88 -52.49 -0.41 1.43 16 19 C 0.00 -0.06 5.01 -17.43 -0.09 -0.14 16 20 N -0.91 -26.25 11.07 55.49 0.61 -25.63 16 21 Si 0.90 21.64 29.58 -169.99 -5.03 16.61 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 C 0.14 2.96 6.57 -3.53 -0.02 2.94 16 26 C -0.09 -1.56 5.95 -28.18 -0.17 -1.73 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 31 H 0.07 0.50 8.10 -51.92 -0.42 0.08 16 32 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.41 3.23 7.44 -40.82 -0.30 2.93 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.40 2.45 8.47 -40.82 -0.35 2.10 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 40 H 0.07 0.74 8.11 -51.93 -0.42 0.32 16 41 H 0.07 0.75 7.78 -51.93 -0.40 0.35 16 42 H 0.09 1.52 7.73 -52.49 -0.41 1.11 16 43 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.09 2.41 6.39 -51.93 -0.33 2.08 16 45 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.06 1.14 7.96 -51.92 -0.41 0.73 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 49 H 0.05 0.78 8.08 -51.93 -0.42 0.36 16 LS Contribution 400.49 15.07 6.04 6.04 Total: -1.00 -33.45 400.49 -9.52 -42.97 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -8.51 Total: 1.31 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -1.61 Total: 1.17 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: -0.58 Total: -54.22 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.18 Total: -13.88 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.45 -9.52 -42.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159465321.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.086 kcal (2) G-P(sol) polarization free energy of solvation -33.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds