Wall clock time and date at job start Fri Apr 10 2020 18:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46850 * 110.99885 * 2 1 4 4 C 1.53042 * 109.52043 * 174.15739 * 3 2 1 5 5 C 1.53120 * 109.27868 * 59.18160 * 4 3 2 6 6 C 1.53123 * 109.21036 * 302.30821 * 5 4 3 7 7 C 1.46850 * 111.00390 * 235.78823 * 2 1 3 8 8 H 1.08995 * 109.46177 * 65.82581 * 7 2 1 9 9 C 1.50698 * 109.45715 * 305.85442 * 7 2 1 10 10 O 1.21276 * 120.00509 * 340.00350 * 9 7 2 11 11 N 1.34783 * 119.99685 * 159.99790 * 9 7 2 12 12 C 1.47130 * 121.05323 * 359.72461 * 11 9 7 13 13 C 1.52767 * 108.97268 * 232.16687 * 12 11 9 14 14 O 1.43100 * 109.42192 * 306.11791 * 13 12 11 15 15 C 1.42496 * 113.96985 * 59.83272 * 14 13 12 16 16 C 1.53460 * 113.76229 * 73.17057 * 15 14 13 17 17 N 1.47666 * 85.97266 * 91.28480 * 16 15 14 18 18 C 1.36933 * 134.46251 * 204.26944 * 17 16 15 19 19 H 1.07999 * 120.00181 * 173.52849 * 18 17 16 20 20 C 1.38822 * 119.99687 * 353.52394 * 18 17 16 21 21 N 1.31613 * 119.99684 * 5.08181 * 20 18 17 22 22 Si 1.86795 * 119.99743 * 185.07732 * 20 18 17 23 23 H 1.48503 * 109.47248 * 94.99284 * 22 20 18 24 24 H 1.48500 * 109.46988 * 214.98796 * 22 20 18 25 25 H 1.48500 * 109.47495 * 334.98961 * 22 20 18 26 26 C 1.47683 * 91.08439 * 24.29143 * 17 16 15 27 27 C 1.47336 * 121.05536 * 180.02562 * 11 9 7 28 28 H 1.09006 * 109.46713 * 56.04799 * 1 2 3 29 29 H 1.09002 * 109.47195 * 176.04447 * 1 2 3 30 30 H 1.09000 * 109.47202 * 296.05263 * 1 2 3 31 31 H 1.08993 * 109.46583 * 54.14510 * 3 2 1 32 32 H 1.09000 * 109.45379 * 294.16336 * 3 2 1 33 33 H 1.08994 * 109.50368 * 299.23291 * 4 3 2 34 34 H 1.09003 * 109.50185 * 179.11617 * 4 3 2 35 35 H 1.08995 * 109.52727 * 62.24566 * 5 4 3 36 36 H 1.08999 * 109.52229 * 182.37837 * 5 4 3 37 37 H 1.09000 * 109.50260 * 177.63029 * 6 5 4 38 38 H 1.08993 * 109.50009 * 297.74879 * 6 5 4 39 39 H 1.09004 * 109.59341 * 351.99869 * 12 11 9 40 40 H 1.08999 * 109.59532 * 112.45093 * 12 11 9 41 41 H 1.09000 * 109.56269 * 186.06637 * 13 12 11 42 42 H 1.08997 * 109.36044 * 66.05256 * 13 12 11 43 43 H 1.09002 * 113.79427 * 205.54997 * 16 15 14 44 44 H 1.08997 * 113.79411 * 337.02335 * 16 15 14 45 45 H 0.97003 * 119.99587 * 180.02562 * 21 20 18 46 46 H 1.09000 * 113.78565 * 221.43774 * 26 17 16 47 47 H 1.08997 * 113.79186 * 89.97065 * 26 17 16 48 48 H 1.09009 * 109.74648 * 251.24047 * 27 11 9 49 49 H 1.08994 * 109.75165 * 11.91459 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3342 0.1468 5 6 4.1188 0.5370 -1.0143 6 6 3.5195 -0.8721 -1.0213 7 6 1.9953 -0.7708 -1.1337 8 1 1.7326 -0.2709 -2.0659 9 6 1.3983 -2.1544 -1.1204 10 8 0.9164 -2.5972 -0.0994 11 7 1.3997 -2.8997 -2.2434 12 6 1.9724 -2.3833 -3.4964 13 6 0.9424 -2.5374 -4.6140 14 8 0.5048 -3.8985 -4.6734 15 6 -0.1006 -4.3650 -3.4707 16 6 -1.5052 -3.7976 -3.2250 17 7 -1.9987 -4.9866 -3.9483 18 6 -3.1367 -5.2772 -4.6524 19 1 -3.2169 -6.2120 -5.1872 20 6 -4.1872 -4.3701 -4.6785 21 7 -4.0521 -3.1902 -4.1113 22 14 -5.7924 -4.8242 -5.5190 23 1 -6.7447 -5.3578 -4.5121 24 1 -6.3743 -3.6175 -6.1597 25 1 -5.5346 -5.8582 -6.5532 26 6 -0.7733 -5.7372 -3.6076 27 6 0.8218 -4.2550 -2.2569 28 1 -0.3633 0.5740 -0.8525 29 1 -0.3634 -1.0252 -0.0709 30 1 -0.3633 0.4513 0.9232 31 1 1.5634 1.9258 0.8329 32 1 1.7325 1.8606 -0.9377 33 1 3.7813 0.8569 1.0907 34 1 3.9099 2.3512 0.1310 35 1 3.8888 1.0353 -1.9559 36 1 5.1999 0.4723 -0.8909 37 1 3.9123 -1.4304 -1.8711 38 1 3.7828 -1.3840 -0.0958 39 1 2.2245 -1.3296 -3.3761 40 1 2.8690 -2.9493 -3.7491 41 1 1.3928 -2.2583 -5.5665 42 1 0.0896 -1.8896 -4.4112 43 1 -1.7915 -3.7722 -2.1736 44 1 -1.6964 -2.8575 -3.7424 45 1 -4.7863 -2.5565 -4.1292 46 1 -0.3833 -6.3383 -4.4290 47 1 -0.8420 -6.2888 -2.6700 48 1 1.6190 -4.9946 -2.3323 49 1 0.2508 -4.4211 -1.3434 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053310880.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:01 Heat of formation + Delta-G solvation = 2.467674 kcal Electronic energy + Delta-G solvation = -29713.880579 eV Core-core repulsion = 25871.593086 eV Total energy + Delta-G solvation = -3842.287493 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.79386 -39.43292 -37.77040 -36.25609 -34.53722 -33.55581 -32.32854 -31.47805 -29.93299 -27.98400 -26.96769 -26.03150 -25.08934 -23.89426 -23.33051 -22.97194 -21.68244 -20.19698 -19.12413 -18.76546 -17.34338 -16.82462 -16.40119 -15.82284 -15.56655 -15.21377 -15.01343 -14.87649 -14.54318 -14.51180 -14.17158 -13.94346 -13.79001 -13.36417 -13.31465 -13.16787 -12.90989 -12.66047 -12.32605 -12.23611 -11.92660 -11.72657 -11.52195 -11.34862 -11.14442 -11.07647 -10.95694 -10.88577 -10.82192 -10.65953 -10.63029 -10.21173 -9.91552 -9.58706 -9.42061 -9.23950 -8.80606 -8.41024 -8.21602 -6.86542 -5.76469 -3.07544 2.67840 2.89181 3.40543 3.45440 3.47494 3.77944 4.02691 4.33319 4.45597 4.52922 4.66068 4.75957 4.88499 4.90465 4.96185 5.06764 5.11805 5.23776 5.25677 5.30012 5.37433 5.38826 5.41649 5.45834 5.56553 5.60865 5.64860 5.72244 5.73025 5.81168 5.84775 5.86767 5.95480 6.06609 6.09932 6.16665 6.30612 6.46156 6.49990 6.56516 6.85026 6.96334 7.00510 7.16833 7.46708 7.50610 7.80095 7.97732 8.28660 9.04785 9.71469 10.58848 11.41262 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.019228 B = 0.003530 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.854080 B = 7929.385351 C = 8558.397561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.520 5.520 3 C 0.056 3.944 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.107 4.107 7 C 0.070 3.930 8 H 0.062 0.938 9 C 0.521 3.479 10 O -0.519 6.519 11 N -0.609 5.609 12 C 0.072 3.928 13 C 0.046 3.954 14 O -0.341 6.341 15 C 0.048 3.952 16 C 0.155 3.845 17 N -0.603 5.603 18 C -0.219 4.219 19 H 0.082 0.918 20 C -0.007 4.007 21 N -0.921 5.921 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.136 3.864 27 C 0.100 3.900 28 H 0.023 0.977 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.033 0.967 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.101 0.899 42 H 0.059 0.941 43 H 0.035 0.965 44 H 0.070 0.930 45 H 0.253 0.747 46 H 0.056 0.944 47 H 0.051 0.949 48 H 0.069 0.931 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.435 9.103 4.909 21.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.245 5.245 3 C -0.072 4.072 4 C -0.156 4.156 5 C -0.157 4.157 6 C -0.145 4.145 7 C -0.042 4.042 8 H 0.079 0.921 9 C 0.308 3.692 10 O -0.394 6.394 11 N -0.344 5.344 12 C -0.052 4.052 13 C -0.031 4.031 14 O -0.259 6.259 15 C 0.007 3.993 16 C 0.030 3.970 17 N -0.329 5.329 18 C -0.347 4.347 19 H 0.099 0.901 20 C -0.204 4.204 21 N -0.568 5.568 22 Si 0.741 3.259 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.205 1.205 26 C 0.009 3.991 27 C -0.023 4.023 28 H 0.041 0.959 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.119 0.881 42 H 0.077 0.923 43 H 0.053 0.947 44 H 0.088 0.912 45 H 0.063 0.937 46 H 0.074 0.926 47 H 0.068 0.932 48 H 0.087 0.913 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 18.009 8.582 5.595 20.719 hybrid contribution -1.313 0.467 -1.004 1.717 sum 16.697 9.048 4.591 19.538 Atomic orbital electron populations 1.22600 0.86046 1.04195 1.00549 1.61650 1.08636 1.12796 1.41433 1.22142 0.95536 0.88823 1.00719 1.21616 0.94491 1.00097 0.99443 1.21577 1.00113 0.95182 0.98798 1.21585 0.91605 0.97985 1.03371 1.21635 0.96369 0.92354 0.93824 0.92089 1.20332 0.79132 0.86767 0.82942 1.90679 1.45121 1.72301 1.31312 1.48174 1.59772 1.16770 1.09686 1.22416 0.97502 1.00245 0.85010 1.22777 0.96520 0.85777 0.98070 1.87932 1.77797 1.25828 1.34354 1.23716 0.92560 0.99284 0.83770 1.22601 0.85398 0.93691 0.95346 1.45769 1.17638 1.10325 1.59179 1.19010 0.90477 1.02783 1.22411 0.90067 1.24802 0.98115 0.96501 1.00941 1.69835 1.31641 1.06288 1.48999 0.86114 0.83772 0.77284 0.78721 1.21628 1.21765 1.20516 1.22499 0.86512 0.91647 0.98398 1.22235 0.97241 0.82168 1.00620 0.95883 0.89201 0.91159 0.90318 0.94870 0.90868 0.91404 0.92002 0.91277 0.90931 0.90312 0.89315 0.90518 0.88098 0.92307 0.94750 0.91162 0.93727 0.92621 0.93205 0.91302 0.88022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.20 60.06 0.55 0.74 16 2 N -0.52 -6.61 4.51 -236.24 -1.07 -7.68 16 3 C 0.06 0.54 5.46 -3.83 -0.02 0.52 16 4 C -0.12 -0.94 6.09 -26.65 -0.16 -1.10 16 5 C -0.12 -0.89 6.00 -26.61 -0.16 -1.05 16 6 C -0.11 -1.03 5.19 -26.58 -0.14 -1.16 16 7 C 0.07 0.85 1.40 -68.80 -0.10 0.75 16 8 H 0.06 0.69 6.53 -51.93 -0.34 0.36 16 9 C 0.52 8.03 6.05 -10.98 -0.07 7.96 16 10 O -0.52 -9.84 14.10 5.56 0.08 -9.76 16 11 N -0.61 -8.95 3.03 -172.73 -0.52 -9.47 16 12 C 0.07 0.84 5.76 -3.82 -0.02 0.81 16 13 C 0.05 0.67 6.87 37.04 0.25 0.93 16 14 O -0.34 -6.47 10.52 -35.23 -0.37 -6.85 16 15 C 0.05 0.94 1.21 -90.33 -0.11 0.83 16 16 C 0.16 3.77 6.56 -3.17 -0.02 3.75 16 17 N -0.60 -15.90 3.70 -180.32 -0.67 -16.57 16 18 C -0.22 -6.30 10.70 -15.06 -0.16 -6.46 16 19 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 20 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 21 N -0.92 -27.79 11.51 55.49 0.64 -27.15 16 22 Si 0.91 22.51 29.56 -169.99 -5.02 17.48 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 C 0.14 2.85 8.33 -3.18 -0.03 2.82 16 27 C 0.10 1.65 5.78 -3.66 -0.02 1.63 16 28 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 1.52 5.44 -51.93 -0.28 1.24 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 32 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.60 7.21 -51.93 -0.37 0.23 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.09 0.82 5.26 -51.93 -0.27 0.54 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.06 0.97 7.19 -51.93 -0.37 0.60 16 43 H 0.03 0.89 7.94 -51.93 -0.41 0.47 16 44 H 0.07 1.89 6.50 -51.93 -0.34 1.56 16 45 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.05 0.97 8.09 -51.93 -0.42 0.55 16 48 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 49 H 0.10 1.83 6.91 -51.93 -0.36 1.47 16 LS Contribution 371.39 15.07 5.60 5.60 Total: -1.00 -34.29 371.39 -9.84 -44.14 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -8.21 Total: -0.42 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: -0.29 Total: 10.67 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: -1.62 Total: -60.87 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.29 Total: -16.61 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.29 -9.84 -44.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053310880.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.604 kcal (2) G-P(sol) polarization free energy of solvation -34.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds