Wall clock time and date at job start Fri Apr 10 2020 18:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46850 * 110.99885 * 2 1 4 4 C 1.53042 * 109.52043 * 174.15739 * 3 2 1 5 5 C 1.53120 * 109.27868 * 59.18160 * 4 3 2 6 6 C 1.53123 * 109.21036 * 302.30821 * 5 4 3 7 7 C 1.46850 * 111.00390 * 235.78823 * 2 1 3 8 8 H 1.08995 * 109.46177 * 65.82581 * 7 2 1 9 9 C 1.50698 * 109.45715 * 305.85442 * 7 2 1 10 10 O 1.21276 * 120.00509 * 340.00350 * 9 7 2 11 11 N 1.34783 * 119.99685 * 159.99790 * 9 7 2 12 12 C 1.47130 * 121.05323 * 359.72461 * 11 9 7 13 13 C 1.52767 * 108.97268 * 232.16687 * 12 11 9 14 14 O 1.43100 * 109.42192 * 306.11791 * 13 12 11 15 15 C 1.42496 * 113.96985 * 59.83272 * 14 13 12 16 16 C 1.53460 * 113.76229 * 73.17057 * 15 14 13 17 17 N 1.47666 * 85.97266 * 91.28480 * 16 15 14 18 18 C 1.36933 * 134.46251 * 204.26944 * 17 16 15 19 19 H 1.07999 * 120.00181 * 173.52849 * 18 17 16 20 20 C 1.38822 * 119.99687 * 353.52394 * 18 17 16 21 21 N 1.31613 * 119.99684 * 5.08181 * 20 18 17 22 22 Si 1.86795 * 119.99743 * 185.07732 * 20 18 17 23 23 H 1.48503 * 109.47248 * 94.99284 * 22 20 18 24 24 H 1.48500 * 109.46988 * 214.98796 * 22 20 18 25 25 H 1.48500 * 109.47495 * 334.98961 * 22 20 18 26 26 C 1.47683 * 91.08439 * 24.29143 * 17 16 15 27 27 C 1.47336 * 121.05536 * 180.02562 * 11 9 7 28 28 H 1.09006 * 109.46713 * 56.04799 * 1 2 3 29 29 H 1.09002 * 109.47195 * 176.04447 * 1 2 3 30 30 H 1.09000 * 109.47202 * 296.05263 * 1 2 3 31 31 H 1.08993 * 109.46583 * 54.14510 * 3 2 1 32 32 H 1.09000 * 109.45379 * 294.16336 * 3 2 1 33 33 H 1.08994 * 109.50368 * 299.23291 * 4 3 2 34 34 H 1.09003 * 109.50185 * 179.11617 * 4 3 2 35 35 H 1.08995 * 109.52727 * 62.24566 * 5 4 3 36 36 H 1.08999 * 109.52229 * 182.37837 * 5 4 3 37 37 H 1.09000 * 109.50260 * 177.63029 * 6 5 4 38 38 H 1.08993 * 109.50009 * 297.74879 * 6 5 4 39 39 H 1.09004 * 109.59341 * 351.99869 * 12 11 9 40 40 H 1.08999 * 109.59532 * 112.45093 * 12 11 9 41 41 H 1.09000 * 109.56269 * 186.06637 * 13 12 11 42 42 H 1.08997 * 109.36044 * 66.05256 * 13 12 11 43 43 H 1.09002 * 113.79427 * 205.54997 * 16 15 14 44 44 H 1.08997 * 113.79411 * 337.02335 * 16 15 14 45 45 H 0.97003 * 119.99587 * 180.02562 * 21 20 18 46 46 H 1.09000 * 113.78565 * 221.43774 * 26 17 16 47 47 H 1.08997 * 113.79186 * 89.97065 * 26 17 16 48 48 H 1.09009 * 109.74648 * 251.24047 * 27 11 9 49 49 H 1.08994 * 109.75165 * 11.91459 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3342 0.1468 5 6 4.1188 0.5370 -1.0143 6 6 3.5195 -0.8721 -1.0213 7 6 1.9953 -0.7708 -1.1337 8 1 1.7326 -0.2709 -2.0659 9 6 1.3983 -2.1544 -1.1204 10 8 0.9164 -2.5972 -0.0994 11 7 1.3997 -2.8997 -2.2434 12 6 1.9724 -2.3833 -3.4964 13 6 0.9424 -2.5374 -4.6140 14 8 0.5048 -3.8985 -4.6734 15 6 -0.1006 -4.3650 -3.4707 16 6 -1.5052 -3.7976 -3.2250 17 7 -1.9987 -4.9866 -3.9483 18 6 -3.1367 -5.2772 -4.6524 19 1 -3.2169 -6.2120 -5.1872 20 6 -4.1872 -4.3701 -4.6785 21 7 -4.0521 -3.1902 -4.1113 22 14 -5.7924 -4.8242 -5.5190 23 1 -6.7447 -5.3578 -4.5121 24 1 -6.3743 -3.6175 -6.1597 25 1 -5.5346 -5.8582 -6.5532 26 6 -0.7733 -5.7372 -3.6076 27 6 0.8218 -4.2550 -2.2569 28 1 -0.3633 0.5740 -0.8525 29 1 -0.3634 -1.0252 -0.0709 30 1 -0.3633 0.4513 0.9232 31 1 1.5634 1.9258 0.8329 32 1 1.7325 1.8606 -0.9377 33 1 3.7813 0.8569 1.0907 34 1 3.9099 2.3512 0.1310 35 1 3.8888 1.0353 -1.9559 36 1 5.1999 0.4723 -0.8909 37 1 3.9123 -1.4304 -1.8711 38 1 3.7828 -1.3840 -0.0958 39 1 2.2245 -1.3296 -3.3761 40 1 2.8690 -2.9493 -3.7491 41 1 1.3928 -2.2583 -5.5665 42 1 0.0896 -1.8896 -4.4112 43 1 -1.7915 -3.7722 -2.1736 44 1 -1.6964 -2.8575 -3.7424 45 1 -4.7863 -2.5565 -4.1292 46 1 -0.3833 -6.3383 -4.4290 47 1 -0.8420 -6.2888 -2.6700 48 1 1.6190 -4.9946 -2.3323 49 1 0.2508 -4.4211 -1.3434 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053310880.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:00 Heat of formation + Delta-G solvation = -22.825222 kcal Electronic energy + Delta-G solvation = -29714.977361 eV Core-core repulsion = 25871.593086 eV Total energy + Delta-G solvation = -3843.384275 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.01466 -40.77616 -38.87366 -37.79984 -35.85409 -34.39689 -34.33741 -32.48859 -31.32761 -29.45723 -28.23190 -27.43736 -26.89959 -24.94851 -24.68670 -23.85088 -23.26775 -21.08215 -20.49645 -20.01522 -18.84545 -18.45285 -17.68959 -17.19619 -16.94761 -16.62597 -16.21595 -16.08694 -15.79698 -15.67293 -15.38059 -15.18953 -15.07990 -14.91548 -14.47501 -14.29814 -14.06533 -13.98179 -13.66211 -13.39087 -13.22123 -13.01610 -12.90488 -12.81908 -12.71232 -12.53979 -12.32164 -12.12321 -11.97271 -11.84184 -11.74347 -11.60173 -11.40877 -11.28795 -11.00316 -10.82301 -10.57566 -9.56320 -9.32972 -8.97332 -7.95797 -5.29282 1.41583 1.44414 1.50431 1.53373 1.77074 2.43054 2.61307 2.85474 3.21372 3.30001 3.36526 3.59796 3.74440 3.78702 3.87481 3.94315 4.04582 4.11276 4.15408 4.25431 4.31829 4.37987 4.44076 4.48770 4.56457 4.58306 4.62382 4.68226 4.76425 4.78475 4.82658 4.85438 4.91464 4.95754 5.02005 5.06589 5.10784 5.16151 5.20393 5.26653 5.29477 5.42537 5.47738 5.84335 5.87464 6.07068 6.29262 6.35214 6.84810 7.10796 7.54744 8.48649 9.21643 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.019228 B = 0.003530 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.854080 B = 7929.385351 C = 8558.397561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.536 5.536 3 C 0.053 3.947 4 C -0.116 4.116 5 C -0.115 4.115 6 C -0.103 4.103 7 C 0.074 3.926 8 H 0.074 0.926 9 C 0.515 3.485 10 O -0.564 6.564 11 N -0.612 5.612 12 C 0.077 3.923 13 C 0.039 3.961 14 O -0.360 6.360 15 C 0.079 3.921 16 C 0.157 3.843 17 N -0.634 5.634 18 C -0.234 4.234 19 H 0.088 0.912 20 C -0.068 4.068 21 N -0.955 5.955 22 Si 0.981 3.019 23 H -0.288 1.288 24 H -0.294 1.294 25 H -0.264 1.264 26 C 0.134 3.866 27 C 0.109 3.891 28 H 0.024 0.976 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.040 0.960 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.061 0.939 39 H 0.119 0.881 40 H 0.109 0.891 41 H 0.137 0.863 42 H 0.028 0.972 43 H 0.007 0.993 44 H 0.034 0.966 45 H 0.247 0.753 46 H 0.069 0.931 47 H 0.070 0.930 48 H 0.100 0.900 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.309 9.647 3.742 23.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.262 5.262 3 C -0.074 4.074 4 C -0.154 4.154 5 C -0.152 4.152 6 C -0.141 4.141 7 C -0.038 4.038 8 H 0.091 0.909 9 C 0.304 3.696 10 O -0.442 6.442 11 N -0.346 5.346 12 C -0.045 4.045 13 C -0.038 4.038 14 O -0.278 6.278 15 C 0.037 3.963 16 C 0.031 3.969 17 N -0.361 5.361 18 C -0.362 4.362 19 H 0.105 0.895 20 C -0.261 4.261 21 N -0.604 5.604 22 Si 0.809 3.191 23 H -0.215 1.215 24 H -0.220 1.220 25 H -0.188 1.188 26 C 0.009 3.991 27 C -0.015 4.015 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.080 0.920 39 H 0.137 0.863 40 H 0.127 0.873 41 H 0.155 0.845 42 H 0.046 0.954 43 H 0.025 0.975 44 H 0.053 0.947 45 H 0.056 0.944 46 H 0.087 0.913 47 H 0.087 0.913 48 H 0.118 0.882 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 20.937 9.117 4.406 23.258 hybrid contribution -2.199 0.311 -0.643 2.312 sum 18.739 9.429 3.763 21.312 Atomic orbital electron populations 1.22438 0.87528 1.01769 1.01075 1.61666 1.07528 1.14853 1.42127 1.22275 0.96922 0.86972 1.01262 1.21630 0.92917 1.01523 0.99312 1.21594 1.00988 0.93491 0.99131 1.21625 0.89311 0.99750 1.03393 1.21724 0.97977 0.89946 0.94137 0.90899 1.21046 0.78346 0.87870 0.82374 1.90657 1.47023 1.73391 1.33123 1.48298 1.59413 1.16081 1.10808 1.22626 0.97076 1.02624 0.82202 1.23093 0.96439 0.82972 1.01262 1.87889 1.77609 1.28203 1.34131 1.23176 0.90756 0.97014 0.85334 1.22416 0.89410 0.92089 0.93016 1.46166 1.18408 1.12259 1.59239 1.19454 0.91528 1.02796 1.22427 0.89466 1.25701 1.01589 0.96474 1.02333 1.70046 1.32209 1.07311 1.50858 0.85021 0.79189 0.77052 0.77865 1.21496 1.22027 1.18791 1.22722 0.84294 0.92618 0.99473 1.21985 0.97374 0.84343 0.97766 0.95727 0.92969 0.90340 0.89989 0.94146 0.91884 0.89110 0.90620 0.89371 0.88960 0.91995 0.86288 0.87302 0.84528 0.95357 0.97495 0.94734 0.94384 0.91320 0.91296 0.88159 0.90218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.20 127.69 1.18 1.75 16 2 N -0.54 -13.38 4.51 -901.33 -4.06 -17.45 16 3 C 0.05 0.92 5.46 86.33 0.47 1.39 16 4 C -0.12 -1.49 6.09 30.65 0.19 -1.31 16 5 C -0.11 -1.27 6.00 30.68 0.18 -1.08 16 6 C -0.10 -1.66 5.19 30.69 0.16 -1.50 16 7 C 0.07 1.68 1.40 44.24 0.06 1.74 16 8 H 0.07 1.49 6.53 -2.39 -0.02 1.47 16 9 C 0.51 15.84 6.05 87.66 0.53 16.37 16 10 O -0.56 -22.32 14.10 -3.02 -0.04 -22.37 16 11 N -0.61 -17.35 3.03 -818.80 -2.48 -19.83 16 12 C 0.08 1.55 5.76 86.18 0.50 2.05 16 13 C 0.04 1.08 6.87 71.90 0.49 1.57 16 14 O -0.36 -13.30 10.52 -148.98 -1.57 -14.87 16 15 C 0.08 3.09 1.21 -10.51 -0.01 3.08 16 16 C 0.16 8.04 6.56 86.30 0.57 8.61 16 17 N -0.63 -34.42 3.70 -729.28 -2.70 -37.12 16 18 C -0.23 -13.72 10.70 84.04 0.90 -12.82 16 19 H 0.09 4.85 7.83 -2.91 -0.02 4.82 16 20 C -0.07 -4.05 5.50 84.87 0.47 -3.58 16 21 N -0.96 -60.26 11.51 21.65 0.25 -60.01 16 22 Si 0.98 47.25 29.56 68.60 2.03 49.28 16 23 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 24 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 25 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 26 C 0.13 5.60 8.33 86.29 0.72 6.32 16 27 C 0.11 3.53 5.78 86.17 0.50 4.03 16 28 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.05 1.91 5.44 -2.39 -0.01 1.90 16 30 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.08 1.36 8.12 -2.39 -0.02 1.34 16 32 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.09 1.13 7.21 -2.39 -0.02 1.11 16 38 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.12 1.72 5.26 -2.39 -0.01 1.70 16 40 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.14 2.75 8.14 -2.39 -0.02 2.73 16 42 H 0.03 0.95 7.19 -2.39 -0.02 0.93 16 43 H 0.01 0.41 7.94 -2.39 -0.02 0.39 16 44 H 0.03 1.99 6.50 -2.39 -0.02 1.97 16 45 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 46 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 47 H 0.07 2.64 8.09 -2.39 -0.02 2.62 16 48 H 0.10 2.67 8.14 -2.38 -0.02 2.65 16 49 H 0.08 2.97 6.91 -2.39 -0.02 2.95 16 Total: -1.00 -79.77 371.39 -0.76 -80.52 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.93 Total: 15.23 kcal Atomic # 6 Polarization: 19.73 SS G_CDS: 6.89 Total: 26.62 kcal Atomic # 7 Polarization: -125.41 SS G_CDS: -9.00 Total: -134.41 kcal Atomic # 8 Polarization: -35.63 SS G_CDS: -1.61 Total: -37.24 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -79.77 -0.76 -80.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053310880.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.699 kcal (2) G-P(sol) polarization free energy of solvation -79.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds