Wall clock time and date at job start Fri Apr 10 2020 18:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47849 * 110.99754 * 2 1 4 4 C 1.54907 * 104.79513 * 146.36230 * 3 2 1 5 5 C 1.55133 * 101.65464 * 322.93091 * 4 3 2 6 6 C 1.47443 * 111.00116 * 120.84170 * 2 1 3 7 7 H 1.08999 * 109.88966 * 117.33548 * 6 2 1 8 8 C 1.50704 * 109.88715 * 356.31452 * 6 2 1 9 9 O 1.21284 * 119.99711 * 307.59776 * 8 6 2 10 10 N 1.34775 * 120.00184 * 127.59775 * 8 6 2 11 11 C 1.46496 * 119.99951 * 180.02562 * 10 8 6 12 12 C 1.52997 * 109.47039 * 179.97438 * 11 10 8 13 13 H 1.08999 * 110.29657 * 305.70184 * 12 11 10 14 14 C 1.54550 * 110.33039 * 183.55797 * 12 11 10 15 15 C 1.54745 * 104.07250 * 217.47342 * 14 12 11 16 16 C 1.53469 * 103.72371 * 0.76862 * 15 14 12 17 17 C 1.52889 * 115.57572 * 252.69683 * 16 15 14 18 18 N 1.47781 * 85.77873 * 219.72958 * 17 16 15 19 19 C 1.36940 * 134.40358 * 203.85068 * 18 17 16 20 20 H 1.08004 * 120.00211 * 184.56420 * 19 18 17 21 21 C 1.38812 * 119.99691 * 4.56494 * 19 18 17 22 22 N 1.31621 * 120.00224 * 354.35582 * 21 19 18 23 23 Si 1.86803 * 119.99972 * 174.35668 * 21 19 18 24 24 H 1.48505 * 109.46862 * 94.99300 * 23 21 19 25 25 H 1.48503 * 109.47268 * 214.99259 * 23 21 19 26 26 H 1.48500 * 109.47120 * 334.99417 * 23 21 19 27 27 C 1.47781 * 91.20085 * 23.87433 * 18 17 16 28 28 O 1.43344 * 106.32620 * 22.63630 * 16 15 14 29 29 H 1.08994 * 109.47287 * 308.71077 * 1 2 3 30 30 H 1.09009 * 109.46954 * 68.71228 * 1 2 3 31 31 H 1.09001 * 109.47023 * 188.70614 * 1 2 3 32 32 H 1.09001 * 110.37413 * 265.19223 * 3 2 1 33 33 H 1.09001 * 110.37421 * 27.42431 * 3 2 1 34 34 H 1.08999 * 110.99135 * 81.02010 * 4 3 2 35 35 H 1.09001 * 110.99095 * 204.79896 * 4 3 2 36 36 H 1.09001 * 110.70718 * 277.27380 * 5 4 3 37 37 H 1.09003 * 110.71159 * 154.03752 * 5 4 3 38 38 H 0.96997 * 119.99295 * 359.97438 * 10 8 6 39 39 H 1.09004 * 109.46794 * 299.99426 * 11 10 8 40 40 H 1.09000 * 109.47313 * 59.99406 * 11 10 8 41 41 H 1.09004 * 110.50899 * 336.11847 * 14 12 11 42 42 H 1.08998 * 110.50953 * 98.82611 * 14 12 11 43 43 H 1.08998 * 110.57405 * 119.32671 * 15 14 12 44 44 H 1.08996 * 110.57385 * 242.20966 * 15 14 12 45 45 H 1.08999 * 113.82290 * 333.94493 * 17 16 15 46 46 H 1.09001 * 113.82197 * 105.51510 * 17 16 15 47 47 H 0.96996 * 119.99845 * 179.97438 * 22 21 19 48 48 H 1.09001 * 113.82914 * 221.91603 * 27 18 17 49 49 H 1.08999 * 113.82739 * 90.33474 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3047 1.3028 0.8296 5 6 2.9158 0.2823 1.9315 6 6 1.9974 -0.7057 1.1818 7 1 2.5697 -1.5784 0.8675 8 6 0.8608 -1.1327 2.0746 9 8 0.0344 -0.3211 2.4342 10 7 0.7628 -2.4163 2.4734 11 6 -0.3424 -2.8315 3.3408 12 6 -0.2204 -4.3265 3.6420 13 1 -0.1564 -4.8951 2.7143 14 6 -1.4256 -4.8049 4.4829 15 6 -0.8151 -5.8344 5.4637 16 6 0.6779 -5.8349 5.1083 17 6 1.1800 -7.0755 4.3693 18 7 2.3846 -6.9591 5.2174 19 6 3.6838 -7.3755 5.0988 20 1 4.3762 -7.2233 5.9136 21 6 4.1109 -7.9930 3.9312 22 7 3.2441 -8.2788 2.9829 23 14 5.9158 -8.4185 3.7061 24 1 6.1471 -9.8270 4.1160 25 1 6.2897 -8.2506 2.2787 26 1 6.7454 -7.5163 4.5445 27 6 1.6273 -6.2145 6.2449 28 8 0.9399 -4.5798 4.4675 29 1 -0.3633 0.6426 0.8018 30 1 -0.3633 0.3731 -0.9576 31 1 -0.3633 -1.0158 0.1556 32 1 2.2147 1.7039 -1.0182 33 1 1.2880 2.0596 0.4706 34 1 4.1301 0.9283 0.2244 35 1 3.5498 2.2723 1.2635 36 1 2.3743 0.7747 2.7391 37 1 3.8000 -0.2278 2.3138 38 1 1.4236 -3.0654 2.1854 39 1 -0.3036 -2.2683 4.2733 40 1 -1.2905 -2.6384 2.8389 41 1 -1.8650 -3.9706 5.0297 42 1 -2.1713 -5.2802 3.8457 43 1 -0.9631 -5.5152 6.4953 44 1 -1.2478 -6.8215 5.3013 45 1 0.5905 -7.9718 4.5624 46 1 1.3703 -6.9094 3.3089 47 1 3.5426 -8.7099 2.1669 48 1 2.1706 -5.3685 6.6657 49 1 1.1726 -6.8508 7.0042 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053582300.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:20 Heat of formation + Delta-G solvation = -6.175471 kcal Electronic energy + Delta-G solvation = -28525.742161 eV Core-core repulsion = 24683.079874 eV Total energy + Delta-G solvation = -3842.662288 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.76966 -39.87772 -37.82726 -36.36217 -34.46438 -32.24903 -32.10821 -31.85432 -30.28051 -28.80646 -26.85377 -25.73278 -25.06650 -24.13381 -22.26955 -21.50619 -21.45591 -21.04090 -19.78636 -19.02512 -17.43243 -16.75726 -16.64299 -16.10365 -15.77862 -15.39843 -15.16862 -15.01049 -14.50979 -14.28332 -14.06963 -13.89392 -13.60093 -13.36752 -13.03583 -12.93225 -12.71967 -12.48970 -12.23697 -11.97595 -11.65887 -11.58583 -11.46376 -11.43202 -11.32514 -11.23079 -11.10328 -11.00218 -10.92661 -10.81333 -10.43775 -10.10550 -10.01482 -9.75285 -9.54043 -9.09867 -8.92775 -8.76805 -8.39898 -6.88458 -5.76437 -3.07412 2.47830 3.12586 3.39343 3.44904 3.47001 3.85608 4.04629 4.33374 4.45211 4.46533 4.68018 4.72425 4.86693 4.92732 5.10473 5.15172 5.21554 5.22870 5.26112 5.32053 5.34117 5.47696 5.50566 5.54790 5.57904 5.62356 5.64050 5.70017 5.70732 5.83029 5.91068 5.93729 5.98671 6.05212 6.17303 6.25429 6.36599 6.44415 6.49860 6.61507 6.64568 6.75816 6.95926 7.19409 7.48243 7.48948 7.64266 7.98287 8.15920 9.04717 9.71491 10.58880 11.40984 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.011473 B = 0.003488 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.955364 B = 8025.483564 C = 9762.534921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 N -0.510 5.510 3 C 0.039 3.961 4 C -0.127 4.127 5 C -0.128 4.128 6 C 0.051 3.949 7 H 0.105 0.895 8 C 0.505 3.495 9 O -0.548 6.548 10 N -0.716 5.716 11 C 0.129 3.871 12 C 0.060 3.940 13 H 0.076 0.924 14 C -0.143 4.143 15 C -0.140 4.140 16 C 0.057 3.943 17 C 0.151 3.849 18 N -0.605 5.605 19 C -0.220 4.220 20 H 0.079 0.921 21 C -0.006 4.006 22 N -0.921 5.921 23 Si 0.910 3.090 24 H -0.290 1.290 25 H -0.289 1.289 26 H -0.280 1.280 27 C 0.129 3.871 28 O -0.333 6.333 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.410 0.590 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.033 0.967 46 H 0.077 0.923 47 H 0.253 0.747 48 H 0.051 0.949 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.983 15.281 -3.211 17.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 N -0.235 5.235 3 C -0.089 4.089 4 C -0.165 4.165 5 C -0.167 4.167 6 C -0.060 4.060 7 H 0.123 0.877 8 C 0.290 3.710 9 O -0.426 6.426 10 N -0.367 5.367 11 C 0.006 3.994 12 C 0.002 3.998 13 H 0.093 0.907 14 C -0.181 4.181 15 C -0.179 4.179 16 C 0.017 3.983 17 C 0.026 3.974 18 N -0.331 5.331 19 C -0.347 4.347 20 H 0.097 0.903 21 C -0.202 4.202 22 N -0.569 5.569 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.216 1.216 26 H -0.206 1.206 27 C 0.003 3.997 28 O -0.252 6.252 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.246 0.754 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.051 0.949 46 H 0.096 0.904 47 H 0.063 0.937 48 H 0.070 0.930 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.953 15.578 -3.542 17.845 hybrid contribution 0.744 -0.625 0.426 1.061 sum -7.208 14.953 -3.117 16.889 Atomic orbital electron populations 1.22927 0.87072 1.02422 1.01783 1.64048 1.09057 1.14691 1.35662 1.23148 0.95752 0.89357 1.00636 1.22698 0.97730 0.99331 0.96696 1.22739 0.99290 0.96396 0.98286 1.22635 0.94257 0.99476 0.89622 0.87735 1.20977 0.86893 0.82188 0.80900 1.90644 1.43089 1.51833 1.57063 1.46097 1.29714 1.10392 1.50504 1.21453 0.89771 0.93565 0.94658 1.23217 0.86853 0.94246 0.95504 0.90650 1.22877 0.97579 0.99414 0.98268 1.22733 0.96174 0.99486 0.99464 1.23730 0.91587 0.86635 0.96383 1.22628 0.85795 0.91007 0.98018 1.45895 1.04721 1.64587 1.17922 1.19008 0.83719 1.32424 0.99594 0.90304 1.24748 0.97815 1.01130 0.96534 1.69816 1.32297 1.46817 1.07955 0.86133 0.84593 0.78024 0.77213 1.21748 1.21574 1.20561 1.22509 0.91030 0.94299 0.91870 1.89021 1.38306 1.37079 1.60747 0.91768 0.91926 0.91973 0.89888 0.93083 0.90253 0.90451 0.90495 0.89708 0.75419 0.90792 0.90496 0.90835 0.90512 0.90919 0.90357 0.94915 0.90438 0.93738 0.93035 0.93562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 8.18 60.06 0.49 0.56 16 2 N -0.51 -5.97 5.44 -232.94 -1.27 -7.23 16 3 C 0.04 0.38 6.73 -2.30 -0.02 0.36 16 4 C -0.13 -1.11 7.08 -24.60 -0.17 -1.28 16 5 C -0.13 -1.36 6.45 -24.91 -0.16 -1.52 16 6 C 0.05 0.61 3.83 -67.87 -0.26 0.35 16 7 H 0.10 1.19 7.95 -51.93 -0.41 0.77 16 8 C 0.50 6.91 4.94 -10.98 -0.05 6.86 16 9 O -0.55 -8.75 13.78 5.55 0.08 -8.67 16 10 N -0.72 -9.58 5.55 -60.30 -0.33 -9.91 16 11 C 0.13 1.69 5.27 -4.05 -0.02 1.67 16 12 C 0.06 0.86 3.33 -25.92 -0.09 0.77 16 13 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 14 C -0.14 -1.74 6.65 -25.00 -0.17 -1.90 16 15 C -0.14 -1.98 6.49 -25.57 -0.17 -2.14 16 16 C 0.06 1.08 1.28 -90.66 -0.12 0.96 16 17 C 0.15 3.50 7.05 -3.40 -0.02 3.47 16 18 N -0.61 -15.63 3.70 -183.63 -0.68 -16.31 16 19 C -0.22 -6.22 10.69 -15.06 -0.16 -6.39 16 20 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 21 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 22 N -0.92 -27.10 11.38 55.49 0.63 -26.47 16 23 Si 0.91 22.15 29.56 -169.99 -5.02 17.12 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 C 0.13 2.67 8.47 -3.40 -0.03 2.64 16 28 O -0.33 -6.22 11.13 -35.23 -0.39 -6.61 16 29 H 0.06 0.86 5.81 -51.93 -0.30 0.56 16 30 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 31 H 0.06 0.79 6.95 -51.93 -0.36 0.43 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.51 7.63 -51.93 -0.40 0.12 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.90 7.71 -51.93 -0.40 0.50 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.41 5.45 8.33 -40.82 -0.34 5.11 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.07 0.79 7.87 -51.93 -0.41 0.38 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.07 0.93 8.12 -51.93 -0.42 0.51 16 44 H 0.08 1.05 7.83 -51.93 -0.41 0.65 16 45 H 0.03 0.76 7.96 -51.93 -0.41 0.35 16 46 H 0.08 2.00 7.13 -51.93 -0.37 1.63 16 47 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 48 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 382.82 15.07 5.77 5.77 Total: -1.00 -32.85 382.82 -10.69 -43.54 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -8.43 Total: 4.61 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -1.04 Total: 4.16 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: -1.65 Total: -59.92 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.32 Total: -15.28 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.85 -10.69 -43.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053582300.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.362 kcal (2) G-P(sol) polarization free energy of solvation -32.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds