Wall clock time and date at job start Fri Apr 10 2020 18:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47849 * 110.99754 * 2 1 4 4 C 1.54907 * 104.79513 * 146.36230 * 3 2 1 5 5 C 1.55133 * 101.65464 * 322.93091 * 4 3 2 6 6 C 1.47443 * 111.00116 * 120.84170 * 2 1 3 7 7 H 1.08999 * 109.88966 * 117.33548 * 6 2 1 8 8 C 1.50704 * 109.88715 * 356.31452 * 6 2 1 9 9 O 1.21284 * 119.99711 * 307.59776 * 8 6 2 10 10 N 1.34775 * 120.00184 * 127.59775 * 8 6 2 11 11 C 1.46496 * 119.99951 * 180.02562 * 10 8 6 12 12 C 1.52997 * 109.47039 * 179.97438 * 11 10 8 13 13 H 1.08999 * 110.29657 * 305.70184 * 12 11 10 14 14 C 1.54550 * 110.33039 * 183.55797 * 12 11 10 15 15 C 1.54745 * 104.07250 * 217.47342 * 14 12 11 16 16 C 1.53469 * 103.72371 * 0.76862 * 15 14 12 17 17 C 1.52889 * 115.57572 * 252.69683 * 16 15 14 18 18 N 1.47781 * 85.77873 * 219.72958 * 17 16 15 19 19 C 1.36940 * 134.40358 * 203.85068 * 18 17 16 20 20 H 1.08004 * 120.00211 * 184.56420 * 19 18 17 21 21 C 1.38812 * 119.99691 * 4.56494 * 19 18 17 22 22 N 1.31621 * 120.00224 * 354.35582 * 21 19 18 23 23 Si 1.86803 * 119.99972 * 174.35668 * 21 19 18 24 24 H 1.48505 * 109.46862 * 94.99300 * 23 21 19 25 25 H 1.48503 * 109.47268 * 214.99259 * 23 21 19 26 26 H 1.48500 * 109.47120 * 334.99417 * 23 21 19 27 27 C 1.47781 * 91.20085 * 23.87433 * 18 17 16 28 28 O 1.43344 * 106.32620 * 22.63630 * 16 15 14 29 29 H 1.08994 * 109.47287 * 308.71077 * 1 2 3 30 30 H 1.09009 * 109.46954 * 68.71228 * 1 2 3 31 31 H 1.09001 * 109.47023 * 188.70614 * 1 2 3 32 32 H 1.09001 * 110.37413 * 265.19223 * 3 2 1 33 33 H 1.09001 * 110.37421 * 27.42431 * 3 2 1 34 34 H 1.08999 * 110.99135 * 81.02010 * 4 3 2 35 35 H 1.09001 * 110.99095 * 204.79896 * 4 3 2 36 36 H 1.09001 * 110.70718 * 277.27380 * 5 4 3 37 37 H 1.09003 * 110.71159 * 154.03752 * 5 4 3 38 38 H 0.96997 * 119.99295 * 359.97438 * 10 8 6 39 39 H 1.09004 * 109.46794 * 299.99426 * 11 10 8 40 40 H 1.09000 * 109.47313 * 59.99406 * 11 10 8 41 41 H 1.09004 * 110.50899 * 336.11847 * 14 12 11 42 42 H 1.08998 * 110.50953 * 98.82611 * 14 12 11 43 43 H 1.08998 * 110.57405 * 119.32671 * 15 14 12 44 44 H 1.08996 * 110.57385 * 242.20966 * 15 14 12 45 45 H 1.08999 * 113.82290 * 333.94493 * 17 16 15 46 46 H 1.09001 * 113.82197 * 105.51510 * 17 16 15 47 47 H 0.96996 * 119.99845 * 179.97438 * 22 21 19 48 48 H 1.09001 * 113.82914 * 221.91603 * 27 18 17 49 49 H 1.08999 * 113.82739 * 90.33474 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3047 1.3028 0.8296 5 6 2.9158 0.2823 1.9315 6 6 1.9974 -0.7057 1.1818 7 1 2.5697 -1.5784 0.8675 8 6 0.8608 -1.1327 2.0746 9 8 0.0344 -0.3211 2.4342 10 7 0.7628 -2.4163 2.4734 11 6 -0.3424 -2.8315 3.3408 12 6 -0.2204 -4.3265 3.6420 13 1 -0.1564 -4.8951 2.7143 14 6 -1.4256 -4.8049 4.4829 15 6 -0.8151 -5.8344 5.4637 16 6 0.6779 -5.8349 5.1083 17 6 1.1800 -7.0755 4.3693 18 7 2.3846 -6.9591 5.2174 19 6 3.6838 -7.3755 5.0988 20 1 4.3762 -7.2233 5.9136 21 6 4.1109 -7.9930 3.9312 22 7 3.2441 -8.2788 2.9829 23 14 5.9158 -8.4185 3.7061 24 1 6.1471 -9.8270 4.1160 25 1 6.2897 -8.2506 2.2787 26 1 6.7454 -7.5163 4.5445 27 6 1.6273 -6.2145 6.2449 28 8 0.9399 -4.5798 4.4675 29 1 -0.3633 0.6426 0.8018 30 1 -0.3633 0.3731 -0.9576 31 1 -0.3633 -1.0158 0.1556 32 1 2.2147 1.7039 -1.0182 33 1 1.2880 2.0596 0.4706 34 1 4.1301 0.9283 0.2244 35 1 3.5498 2.2723 1.2635 36 1 2.3743 0.7747 2.7391 37 1 3.8000 -0.2278 2.3138 38 1 1.4236 -3.0654 2.1854 39 1 -0.3036 -2.2683 4.2733 40 1 -1.2905 -2.6384 2.8389 41 1 -1.8650 -3.9706 5.0297 42 1 -2.1713 -5.2802 3.8457 43 1 -0.9631 -5.5152 6.4953 44 1 -1.2478 -6.8215 5.3013 45 1 0.5905 -7.9718 4.5624 46 1 1.3703 -6.9094 3.3089 47 1 3.5426 -8.7099 2.1669 48 1 2.1706 -5.3685 6.6657 49 1 1.1726 -6.8508 7.0042 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053582300.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:19 Heat of formation + Delta-G solvation = -30.767375 kcal Electronic energy + Delta-G solvation = -28526.808546 eV Core-core repulsion = 24683.079874 eV Total energy + Delta-G solvation = -3843.728673 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.81365 -41.27388 -38.85237 -37.86101 -35.70054 -34.10012 -33.13399 -33.05011 -31.39658 -30.08472 -28.51716 -26.80298 -26.63435 -25.50176 -23.64400 -22.77127 -22.24162 -22.21303 -20.83780 -20.59266 -18.72906 -18.42929 -17.76837 -17.19159 -17.05383 -16.76363 -16.39127 -16.14056 -16.05054 -15.61313 -15.41486 -15.11983 -14.79749 -14.59247 -14.35101 -14.22094 -14.05336 -13.74515 -13.25097 -13.17900 -12.96991 -12.93648 -12.82233 -12.62878 -12.57406 -12.50650 -12.31497 -12.27460 -12.20057 -12.08016 -11.77491 -11.66782 -11.33318 -11.26518 -11.07195 -10.85616 -10.44363 -10.19811 -9.34888 -8.91684 -7.90167 -5.22121 1.41177 1.44832 1.46434 1.55794 2.08456 2.46935 2.75442 2.97199 3.30105 3.39076 3.44766 3.60733 3.65778 3.71772 3.76328 3.87066 4.02654 4.11911 4.15805 4.27032 4.36420 4.40837 4.50648 4.51660 4.56204 4.57754 4.72576 4.76264 4.78677 4.83964 4.89437 4.94825 4.97061 4.98333 5.03662 5.04017 5.08825 5.15891 5.21575 5.22604 5.37231 5.41274 5.51689 5.75218 5.87796 5.93325 6.16529 6.39188 6.92427 7.07101 7.60827 8.55830 9.26683 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.011473 B = 0.003488 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.955364 B = 8025.483564 C = 9762.534921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.517 5.517 3 C 0.035 3.965 4 C -0.119 4.119 5 C -0.129 4.129 6 C 0.048 3.952 7 H 0.108 0.892 8 C 0.505 3.495 9 O -0.572 6.572 10 N -0.717 5.717 11 C 0.136 3.864 12 C 0.058 3.942 13 H 0.067 0.933 14 C -0.134 4.134 15 C -0.132 4.132 16 C 0.076 3.924 17 C 0.149 3.851 18 N -0.638 5.638 19 C -0.236 4.236 20 H 0.079 0.921 21 C -0.062 4.062 22 N -0.950 5.950 23 Si 0.975 3.025 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.270 1.270 27 C 0.126 3.874 28 O -0.360 6.360 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.099 0.901 33 H 0.046 0.954 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.062 0.938 37 H 0.091 0.909 38 H 0.409 0.591 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.030 0.970 46 H 0.042 0.958 47 H 0.248 0.752 48 H 0.049 0.951 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.429 16.308 -2.938 18.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.241 5.241 3 C -0.092 4.092 4 C -0.156 4.156 5 C -0.168 4.168 6 C -0.063 4.063 7 H 0.126 0.874 8 C 0.292 3.708 9 O -0.452 6.452 10 N -0.368 5.368 11 C 0.012 3.988 12 C 0.001 3.999 13 H 0.085 0.915 14 C -0.172 4.172 15 C -0.171 4.171 16 C 0.035 3.965 17 C 0.023 3.977 18 N -0.365 5.365 19 C -0.365 4.365 20 H 0.097 0.903 21 C -0.255 4.255 22 N -0.599 5.599 23 Si 0.804 3.196 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.195 1.195 27 C 0.001 3.999 28 O -0.279 6.279 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.117 0.883 33 H 0.064 0.936 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.080 0.920 37 H 0.110 0.890 38 H 0.245 0.755 39 H 0.085 0.915 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.117 0.883 43 H 0.112 0.888 44 H 0.106 0.894 45 H 0.047 0.953 46 H 0.060 0.940 47 H 0.057 0.943 48 H 0.068 0.932 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.415 16.619 -3.242 18.908 hybrid contribution 0.868 -0.927 0.356 1.319 sum -7.547 15.692 -2.886 17.650 Atomic orbital electron populations 1.22818 0.87362 1.01338 1.01969 1.64117 1.08802 1.15948 1.35272 1.23258 0.96002 0.88149 1.01779 1.22711 0.97438 0.99610 0.95875 1.22751 0.99023 0.96601 0.98399 1.22730 0.93833 1.00079 0.89665 0.87401 1.21293 0.86978 0.81867 0.80694 1.90632 1.44095 1.52374 1.58105 1.46179 1.29805 1.10429 1.50412 1.21433 0.90349 0.92544 0.94455 1.23371 0.86642 0.94890 0.95031 0.91529 1.22899 0.96771 0.99657 0.97850 1.22707 0.92276 1.00880 1.01196 1.23340 0.94308 0.84891 0.93964 1.22575 0.85550 0.93326 0.96217 1.46300 1.04826 1.65096 1.20282 1.19384 0.85425 1.31925 0.99727 0.90320 1.25557 1.01849 1.01696 0.96404 1.70000 1.33936 1.47803 1.08199 0.85115 0.79872 0.77812 0.76850 1.21379 1.21801 1.19476 1.22732 0.90944 0.93971 0.92246 1.88993 1.40833 1.36591 1.61490 0.93431 0.90352 0.93146 0.88268 0.93571 0.89274 0.88774 0.91953 0.88997 0.75529 0.91520 0.88880 0.88660 0.88260 0.88772 0.89418 0.95254 0.94000 0.94298 0.93222 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.31 8.18 127.69 1.04 1.36 16 2 N -0.52 -11.65 5.44 -890.89 -4.85 -16.51 16 3 C 0.04 0.64 6.73 86.77 0.58 1.22 16 4 C -0.12 -1.86 7.08 31.98 0.23 -1.63 16 5 C -0.13 -2.63 6.45 31.77 0.21 -2.43 16 6 C 0.05 1.13 3.83 44.51 0.17 1.30 16 7 H 0.11 2.42 7.95 -2.39 -0.02 2.40 16 8 C 0.50 13.83 4.94 87.66 0.43 14.27 16 9 O -0.57 -18.28 13.78 -3.04 -0.04 -18.32 16 10 N -0.72 -19.22 5.55 -463.06 -2.57 -21.79 16 11 C 0.14 3.43 5.27 86.38 0.46 3.89 16 12 C 0.06 1.61 3.33 31.12 0.10 1.71 16 13 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 14 C -0.13 -2.84 6.65 31.72 0.21 -2.63 16 15 C -0.13 -3.37 6.49 31.35 0.20 -3.16 16 16 C 0.08 2.79 1.28 -10.66 -0.01 2.77 16 17 C 0.15 7.02 7.05 86.10 0.61 7.63 16 18 N -0.64 -33.45 3.70 -741.16 -2.75 -36.20 16 19 C -0.24 -13.60 10.69 84.03 0.90 -12.70 16 20 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 21 C -0.06 -3.57 5.50 84.86 0.47 -3.11 16 22 N -0.95 -57.45 11.38 21.65 0.25 -57.20 16 23 Si 0.98 46.17 29.56 68.60 2.03 48.20 16 24 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 25 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 26 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 27 C 0.13 5.13 8.47 86.09 0.73 5.86 16 28 O -0.36 -13.33 11.13 -148.98 -1.66 -14.98 16 29 H 0.05 1.28 5.81 -2.39 -0.01 1.26 16 30 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.05 1.27 6.95 -2.39 -0.02 1.25 16 32 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.05 0.88 7.63 -2.39 -0.02 0.86 16 34 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.06 1.45 7.71 -2.39 -0.02 1.44 16 37 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.41 11.11 8.33 -92.71 -0.77 10.34 16 39 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.09 1.67 7.87 -2.38 -0.02 1.65 16 42 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.09 2.05 8.12 -2.39 -0.02 2.03 16 44 H 0.09 2.11 7.83 -2.39 -0.02 2.09 16 45 H 0.03 1.39 7.96 -2.39 -0.02 1.37 16 46 H 0.04 2.25 7.13 -2.39 -0.02 2.23 16 47 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 48 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 49 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -72.43 382.82 -3.11 -75.53 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: 0.16 Total: 26.93 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: 6.32 Total: 14.34 kcal Atomic # 7 Polarization: -121.77 SS G_CDS: -9.92 Total: -131.69 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -1.70 Total: -33.31 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -72.43 -3.11 -75.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053582300.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.766 kcal (2) G-P(sol) polarization free energy of solvation -72.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds