Wall clock time and date at job start Fri Apr 10 2020 18:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47837 * 111.00203 * 2 1 4 4 C 1.54905 * 104.79678 * 146.36399 * 3 2 1 5 5 C 1.55131 * 101.65554 * 322.92790 * 4 3 2 6 6 H 1.09004 * 110.85673 * 277.20035 * 5 4 3 7 7 C 1.50695 * 110.71071 * 154.03498 * 5 4 3 8 8 O 1.21284 * 119.99831 * 4.94910 * 7 5 4 9 9 N 1.34783 * 120.00463 * 184.94654 * 7 5 4 10 10 C 1.46500 * 120.00167 * 180.02562 * 9 7 5 11 11 C 1.52999 * 109.47009 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.29144 * 57.86083 * 11 10 9 13 13 C 1.54541 * 110.32805 * 179.97438 * 11 10 9 14 14 C 1.54737 * 104.07255 * 142.62760 * 13 11 10 15 15 C 1.53465 * 103.72177 * 359.23702 * 14 13 11 16 16 C 1.52883 * 115.59464 * 207.24214 * 15 14 13 17 17 N 1.47786 * 85.78423 * 219.75324 * 16 15 14 18 18 C 1.36935 * 134.39720 * 203.83767 * 17 16 15 19 19 H 1.08001 * 120.00070 * 180.02562 * 18 17 16 20 20 C 1.38816 * 120.00404 * 0.04798 * 18 17 16 21 21 N 1.31617 * 119.99953 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00079 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46906 * 89.99889 * 22 20 18 24 24 H 1.48498 * 109.47138 * 209.99822 * 22 20 18 25 25 H 1.48500 * 109.47283 * 330.00045 * 22 20 18 26 26 C 1.47782 * 91.19794 * 23.87373 * 17 16 15 27 27 O 1.43247 * 106.26232 * 337.28972 * 15 14 13 28 28 C 1.47447 * 110.99515 * 120.84223 * 2 1 3 29 29 H 1.09008 * 109.46764 * 299.16323 * 1 2 3 30 30 H 1.08992 * 109.46918 * 59.15813 * 1 2 3 31 31 H 1.08996 * 109.47437 * 179.16312 * 1 2 3 32 32 H 1.09010 * 110.37185 * 265.19148 * 3 2 1 33 33 H 1.08997 * 110.37622 * 27.41634 * 3 2 1 34 34 H 1.08996 * 110.99323 * 204.83273 * 4 3 2 35 35 H 1.09004 * 110.98878 * 81.02012 * 4 3 2 36 36 H 0.97006 * 119.99485 * 0.02562 * 9 7 5 37 37 H 1.09002 * 109.46920 * 59.99798 * 10 9 7 38 38 H 1.09001 * 109.46776 * 300.00270 * 10 9 7 39 39 H 1.09004 * 110.50768 * 23.98207 * 13 11 10 40 40 H 1.08998 * 110.51261 * 261.27599 * 13 11 10 41 41 H 1.08997 * 110.57662 * 117.79573 * 14 13 11 42 42 H 1.09002 * 110.57647 * 240.68074 * 14 13 11 43 43 H 1.09006 * 113.81992 * 333.96745 * 16 15 14 44 44 H 1.09002 * 113.82376 * 105.53655 * 16 15 14 45 45 H 0.97000 * 120.00237 * 179.97438 * 21 20 18 46 46 H 1.09006 * 113.81943 * 221.91820 * 26 17 16 47 47 H 1.08994 * 113.93759 * 90.35625 * 26 17 16 48 48 H 1.09003 * 109.88887 * 117.33959 * 28 2 1 49 49 H 1.08988 * 109.89429 * 356.14358 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3802 0.0000 4 6 3.3048 1.3026 0.8296 5 6 2.9159 0.2822 1.9315 6 1 2.3754 0.7725 2.7411 7 6 4.1383 -0.4231 2.4600 8 8 5.2414 -0.0919 2.0798 9 7 4.0058 -1.4220 3.3551 10 6 5.1943 -2.1072 3.8693 11 6 4.7687 -3.1902 4.8627 12 1 4.0913 -3.8973 4.3839 13 6 6.0087 -3.9270 5.4176 14 6 5.6559 -4.1928 6.9006 15 6 4.2628 -3.5695 7.0609 16 6 3.9118 -3.0899 8.4694 17 7 2.5639 -3.6330 8.2007 18 6 1.3124 -3.3780 8.6943 19 1 0.4620 -3.9294 8.3211 20 6 1.1364 -2.4106 9.6742 21 7 2.1726 -1.7380 10.1284 22 14 -0.5710 -2.0624 10.3470 23 1 -0.8303 -2.9395 11.5170 24 1 -0.6575 -0.6403 10.7657 25 1 -1.5825 -2.3307 9.2934 26 6 3.1064 -4.5617 7.1871 27 8 4.1376 -2.5939 6.0194 28 6 1.9973 -0.7057 1.1819 29 1 -0.3633 0.5008 0.8975 30 1 -0.3633 0.5268 -0.8823 31 1 -0.3634 -1.0275 -0.0150 32 1 2.2149 1.7037 -1.0183 33 1 1.2882 2.0595 0.4705 34 1 3.5496 2.2718 1.2639 35 1 4.1302 0.9280 0.2242 36 1 3.1236 -1.6871 3.6589 37 1 5.8399 -1.3871 4.3719 38 1 5.7360 -2.5653 3.0418 39 1 6.8936 -3.2949 5.3429 40 1 6.1636 -4.8667 4.8875 41 1 5.6217 -5.2638 7.1002 42 1 6.3730 -3.7023 7.5588 43 1 4.4485 -3.6149 9.2597 44 1 3.9350 -2.0061 8.5840 45 1 2.0496 -1.0617 10.8129 46 1 2.4935 -4.6400 6.2891 47 1 3.4003 -5.5315 7.5883 48 1 2.5697 -1.5785 0.8675 49 1 1.1756 -1.0119 1.8291 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053698059.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:27 Heat of formation + Delta-G solvation = -15.769933 kcal Electronic energy + Delta-G solvation = -28140.100176 eV Core-core repulsion = 24297.021841 eV Total energy + Delta-G solvation = -3843.078335 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.39926 -39.84555 -38.27551 -36.42427 -34.44815 -32.47808 -32.10564 -31.82170 -29.97492 -28.82751 -26.92900 -26.04553 -25.06622 -24.06605 -22.35241 -21.60048 -21.24611 -21.02729 -19.85070 -19.04274 -17.49694 -16.76386 -16.60723 -16.27435 -15.87290 -15.38620 -14.96801 -14.89349 -14.58225 -14.25359 -14.16495 -13.94100 -13.69512 -13.51576 -13.15963 -13.06216 -12.73509 -12.48633 -12.23510 -12.13135 -11.91750 -11.63006 -11.55045 -11.45815 -11.39339 -11.20969 -11.18017 -11.05058 -10.97937 -10.82323 -10.42815 -10.08198 -9.81549 -9.64577 -9.60328 -9.07116 -9.01148 -8.80906 -8.65719 -6.88951 -5.76211 -3.08118 2.59833 3.11895 3.38409 3.42868 3.45397 3.69850 4.04919 4.20626 4.40892 4.44224 4.67155 4.71314 4.86463 5.01148 5.01624 5.03688 5.06707 5.12726 5.14203 5.20372 5.24532 5.34910 5.38195 5.50669 5.54435 5.57606 5.59583 5.63551 5.69637 5.72102 5.76034 5.91742 6.00238 6.01382 6.14862 6.24264 6.30681 6.41821 6.54128 6.59424 6.63596 6.71790 6.91947 7.19092 7.46839 7.49238 7.67905 7.98067 8.19372 9.04027 9.70843 10.58118 11.41154 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.010378 B = 0.003383 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.327228 B = 8275.475559 C =10164.104629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.533 5.533 3 C 0.039 3.961 4 C -0.107 4.107 5 C -0.135 4.135 6 H 0.105 0.895 7 C 0.527 3.473 8 O -0.544 6.544 9 N -0.720 5.720 10 C 0.129 3.871 11 C 0.057 3.943 12 H 0.071 0.929 13 C -0.144 4.144 14 C -0.140 4.140 15 C 0.058 3.942 16 C 0.176 3.824 17 N -0.605 5.605 18 C -0.222 4.222 19 H 0.079 0.921 20 C -0.007 4.007 21 N -0.920 5.920 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.104 3.896 27 O -0.328 6.328 28 C 0.052 3.948 29 H 0.030 0.970 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.049 0.951 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.407 0.593 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.041 0.959 44 H 0.080 0.920 45 H 0.254 0.746 46 H 0.045 0.955 47 H 0.041 0.959 48 H 0.082 0.918 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.550 0.264 -18.009 18.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.257 5.257 3 C -0.088 4.088 4 C -0.145 4.145 5 C -0.157 4.157 6 H 0.123 0.877 7 C 0.312 3.688 8 O -0.421 6.421 9 N -0.371 5.371 10 C 0.006 3.994 11 C -0.001 4.001 12 H 0.089 0.911 13 C -0.182 4.182 14 C -0.178 4.178 15 C 0.017 3.983 16 C 0.051 3.949 17 N -0.331 5.331 18 C -0.349 4.349 19 H 0.097 0.903 20 C -0.203 4.203 21 N -0.567 5.567 22 Si 0.741 3.259 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.207 1.207 26 C -0.022 4.022 27 O -0.247 6.247 28 C -0.077 4.077 29 H 0.049 0.951 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.242 0.758 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.058 0.942 44 H 0.099 0.901 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.059 0.941 48 H 0.101 0.899 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.137 0.624 -18.512 18.979 hybrid contribution -1.629 0.158 1.527 2.238 sum 2.508 0.781 -16.985 17.187 Atomic orbital electron populations 1.22581 0.87353 1.02356 1.00818 1.63588 1.08185 1.14610 1.39355 1.23125 0.95583 0.89281 1.00858 1.22585 0.97857 0.98589 0.95507 1.22606 0.95538 0.97871 0.99694 0.87703 1.20243 0.90455 0.79540 0.78551 1.90683 1.27352 1.64957 1.59149 1.45950 1.10783 1.36244 1.44143 1.21461 0.87879 0.94415 0.95677 1.23236 0.94209 0.93920 0.88760 0.91142 1.22893 0.98029 1.00572 0.96717 1.22740 0.97942 1.01563 0.95599 1.23746 0.91940 0.90448 0.92160 1.22190 0.84096 1.00752 0.87876 1.45869 1.02562 1.40386 1.44279 1.18978 0.82912 1.16528 1.16512 0.90330 1.24760 0.97435 0.98960 0.99166 1.69805 1.28203 1.26764 1.31971 0.86138 0.83480 0.77336 0.78897 1.21634 1.21623 1.20672 1.22944 0.92769 0.93233 0.93272 1.89074 1.78302 1.38169 1.19138 1.22820 0.97548 0.96862 0.90425 0.95148 0.91274 0.91150 0.89811 0.93253 0.90222 0.89233 0.75791 0.90668 0.90408 0.90644 0.90655 0.90585 0.90503 0.94169 0.90131 0.93637 0.93678 0.94126 0.89940 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.12 60.07 0.55 0.69 16 2 N -0.53 -5.18 5.44 -239.52 -1.30 -6.48 16 3 C 0.04 0.34 6.73 -2.30 -0.02 0.33 16 4 C -0.11 -1.08 6.13 -24.60 -0.15 -1.23 16 5 C -0.13 -1.45 3.34 -89.95 -0.30 -1.75 16 6 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 7 C 0.53 7.05 7.02 -10.99 -0.08 6.97 16 8 O -0.54 -8.99 15.76 5.55 0.09 -8.91 16 9 N -0.72 -9.15 5.46 -60.29 -0.33 -9.48 16 10 C 0.13 1.65 5.29 -4.04 -0.02 1.63 16 11 C 0.06 0.77 3.34 -25.92 -0.09 0.68 16 12 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 13 C -0.14 -1.68 6.65 -25.01 -0.17 -1.84 16 14 C -0.14 -1.97 6.49 -25.58 -0.17 -2.13 16 15 C 0.06 1.08 1.28 -90.66 -0.12 0.97 16 16 C 0.18 4.16 7.02 -3.40 -0.02 4.14 16 17 N -0.60 -15.57 3.71 -183.58 -0.68 -16.25 16 18 C -0.22 -6.26 10.70 -15.06 -0.16 -6.42 16 19 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 20 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 21 N -0.92 -27.45 11.40 55.49 0.63 -26.82 16 22 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.10 2.10 8.44 -3.40 -0.03 2.07 16 27 O -0.33 -6.08 11.10 -35.23 -0.39 -6.47 16 28 C 0.05 0.51 6.43 -2.83 -0.02 0.49 16 29 H 0.03 0.24 8.10 -51.92 -0.42 -0.18 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 33 H 0.05 0.40 7.78 -51.93 -0.40 -0.01 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 1.04 7.49 -51.93 -0.39 0.65 16 36 H 0.41 4.91 8.46 -40.82 -0.35 4.56 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.81 7.87 -51.93 -0.41 0.41 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.96 7.83 -51.93 -0.41 0.56 16 42 H 0.08 1.06 8.12 -51.93 -0.42 0.64 16 43 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.08 2.17 7.19 -51.93 -0.37 1.79 16 45 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 47 H 0.04 0.77 7.95 -51.93 -0.41 0.35 16 48 H 0.08 0.85 7.81 -51.93 -0.41 0.45 16 49 H 0.07 0.59 7.58 -51.94 -0.39 0.20 16 LS Contribution 389.11 15.07 5.86 5.86 Total: -1.00 -33.67 389.11 -10.60 -44.27 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -8.58 Total: 2.83 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -0.88 Total: 4.29 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: -1.68 Total: -59.04 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.30 Total: -15.38 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.67 -10.60 -44.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053698059.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.501 kcal (2) G-P(sol) polarization free energy of solvation -33.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds