Wall clock time and date at job start Fri Apr 10 2020 18:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47837 * 111.00203 * 2 1 4 4 C 1.54905 * 104.79678 * 146.36399 * 3 2 1 5 5 C 1.55131 * 101.65554 * 322.92790 * 4 3 2 6 6 H 1.09004 * 110.85673 * 277.20035 * 5 4 3 7 7 C 1.50695 * 110.71071 * 154.03498 * 5 4 3 8 8 O 1.21284 * 119.99831 * 4.94910 * 7 5 4 9 9 N 1.34783 * 120.00463 * 184.94654 * 7 5 4 10 10 C 1.46500 * 120.00167 * 180.02562 * 9 7 5 11 11 C 1.52999 * 109.47009 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.29144 * 57.86083 * 11 10 9 13 13 C 1.54541 * 110.32805 * 179.97438 * 11 10 9 14 14 C 1.54737 * 104.07255 * 142.62760 * 13 11 10 15 15 C 1.53465 * 103.72177 * 359.23702 * 14 13 11 16 16 C 1.52883 * 115.59464 * 207.24214 * 15 14 13 17 17 N 1.47786 * 85.78423 * 219.75324 * 16 15 14 18 18 C 1.36935 * 134.39720 * 203.83767 * 17 16 15 19 19 H 1.08001 * 120.00070 * 180.02562 * 18 17 16 20 20 C 1.38816 * 120.00404 * 0.04798 * 18 17 16 21 21 N 1.31617 * 119.99953 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00079 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46906 * 89.99889 * 22 20 18 24 24 H 1.48498 * 109.47138 * 209.99822 * 22 20 18 25 25 H 1.48500 * 109.47283 * 330.00045 * 22 20 18 26 26 C 1.47782 * 91.19794 * 23.87373 * 17 16 15 27 27 O 1.43247 * 106.26232 * 337.28972 * 15 14 13 28 28 C 1.47447 * 110.99515 * 120.84223 * 2 1 3 29 29 H 1.09008 * 109.46764 * 299.16323 * 1 2 3 30 30 H 1.08992 * 109.46918 * 59.15813 * 1 2 3 31 31 H 1.08996 * 109.47437 * 179.16312 * 1 2 3 32 32 H 1.09010 * 110.37185 * 265.19148 * 3 2 1 33 33 H 1.08997 * 110.37622 * 27.41634 * 3 2 1 34 34 H 1.08996 * 110.99323 * 204.83273 * 4 3 2 35 35 H 1.09004 * 110.98878 * 81.02012 * 4 3 2 36 36 H 0.97006 * 119.99485 * 0.02562 * 9 7 5 37 37 H 1.09002 * 109.46920 * 59.99798 * 10 9 7 38 38 H 1.09001 * 109.46776 * 300.00270 * 10 9 7 39 39 H 1.09004 * 110.50768 * 23.98207 * 13 11 10 40 40 H 1.08998 * 110.51261 * 261.27599 * 13 11 10 41 41 H 1.08997 * 110.57662 * 117.79573 * 14 13 11 42 42 H 1.09002 * 110.57647 * 240.68074 * 14 13 11 43 43 H 1.09006 * 113.81992 * 333.96745 * 16 15 14 44 44 H 1.09002 * 113.82376 * 105.53655 * 16 15 14 45 45 H 0.97000 * 120.00237 * 179.97438 * 21 20 18 46 46 H 1.09006 * 113.81943 * 221.91820 * 26 17 16 47 47 H 1.08994 * 113.93759 * 90.35625 * 26 17 16 48 48 H 1.09003 * 109.88887 * 117.33959 * 28 2 1 49 49 H 1.08988 * 109.89429 * 356.14358 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3802 0.0000 4 6 3.3048 1.3026 0.8296 5 6 2.9159 0.2822 1.9315 6 1 2.3754 0.7725 2.7411 7 6 4.1383 -0.4231 2.4600 8 8 5.2414 -0.0919 2.0798 9 7 4.0058 -1.4220 3.3551 10 6 5.1943 -2.1072 3.8693 11 6 4.7687 -3.1902 4.8627 12 1 4.0913 -3.8973 4.3839 13 6 6.0087 -3.9270 5.4176 14 6 5.6559 -4.1928 6.9006 15 6 4.2628 -3.5695 7.0609 16 6 3.9118 -3.0899 8.4694 17 7 2.5639 -3.6330 8.2007 18 6 1.3124 -3.3780 8.6943 19 1 0.4620 -3.9294 8.3211 20 6 1.1364 -2.4106 9.6742 21 7 2.1726 -1.7380 10.1284 22 14 -0.5710 -2.0624 10.3470 23 1 -0.8303 -2.9395 11.5170 24 1 -0.6575 -0.6403 10.7657 25 1 -1.5825 -2.3307 9.2934 26 6 3.1064 -4.5617 7.1871 27 8 4.1376 -2.5939 6.0194 28 6 1.9973 -0.7057 1.1819 29 1 -0.3633 0.5008 0.8975 30 1 -0.3633 0.5268 -0.8823 31 1 -0.3634 -1.0275 -0.0150 32 1 2.2149 1.7037 -1.0183 33 1 1.2882 2.0595 0.4705 34 1 3.5496 2.2718 1.2639 35 1 4.1302 0.9280 0.2242 36 1 3.1236 -1.6871 3.6589 37 1 5.8399 -1.3871 4.3719 38 1 5.7360 -2.5653 3.0418 39 1 6.8936 -3.2949 5.3429 40 1 6.1636 -4.8667 4.8875 41 1 5.6217 -5.2638 7.1002 42 1 6.3730 -3.7023 7.5588 43 1 4.4485 -3.6149 9.2597 44 1 3.9350 -2.0061 8.5840 45 1 2.0496 -1.0617 10.8129 46 1 2.4935 -4.6400 6.2891 47 1 3.4003 -5.5315 7.5883 48 1 2.5697 -1.5785 0.8675 49 1 1.1756 -1.0119 1.8291 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053698059.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:26 Heat of formation + Delta-G solvation = -41.135378 kcal Electronic energy + Delta-G solvation = -28141.200104 eV Core-core repulsion = 24297.021841 eV Total energy + Delta-G solvation = -3844.178263 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.52621 -41.08459 -39.18477 -37.93475 -35.66961 -34.09060 -33.30737 -32.99356 -31.07083 -29.97041 -28.54219 -26.87288 -26.73128 -25.38200 -23.63195 -22.86389 -22.15887 -21.97975 -20.85468 -20.57987 -18.73360 -18.46642 -17.66453 -17.17450 -16.98995 -16.95879 -16.26041 -16.15510 -15.88827 -15.52391 -15.33629 -14.99379 -14.79100 -14.56058 -14.43675 -14.24490 -14.18526 -13.77155 -13.31187 -13.17404 -12.93611 -12.90475 -12.78303 -12.71049 -12.61220 -12.55515 -12.42153 -12.21570 -12.18707 -12.05016 -11.84532 -11.61533 -11.34385 -11.23948 -10.94356 -10.88340 -10.43649 -10.14378 -9.36830 -8.92339 -7.90195 -5.22927 1.43567 1.45975 1.54316 1.54413 2.12630 2.46554 2.79862 2.99295 3.29462 3.37689 3.40436 3.54735 3.58808 3.77341 3.83702 3.88765 4.07998 4.18037 4.22063 4.27537 4.32127 4.43100 4.46380 4.52483 4.53447 4.60427 4.65346 4.73604 4.81103 4.82525 4.87868 4.95299 4.98336 5.00996 5.05073 5.05443 5.13017 5.16712 5.19240 5.24028 5.38141 5.39446 5.51425 5.87875 5.92001 6.04106 6.21125 6.45683 6.90751 7.14599 7.60791 8.55489 9.26983 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.010378 B = 0.003383 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.327228 B = 8275.475559 C =10164.104629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.547 5.547 3 C 0.044 3.956 4 C -0.106 4.106 5 C -0.132 4.132 6 H 0.111 0.889 7 C 0.524 3.476 8 O -0.579 6.579 9 N -0.717 5.717 10 C 0.132 3.868 11 C 0.057 3.943 12 H 0.086 0.914 13 C -0.134 4.134 14 C -0.134 4.134 15 C 0.078 3.922 16 C 0.168 3.832 17 N -0.638 5.638 18 C -0.233 4.233 19 H 0.084 0.916 20 C -0.068 4.068 21 N -0.955 5.955 22 Si 0.978 3.022 23 H -0.285 1.285 24 H -0.296 1.296 25 H -0.267 1.267 26 C 0.107 3.893 27 O -0.362 6.362 28 C 0.057 3.943 29 H 0.031 0.969 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.411 0.589 37 H 0.057 0.943 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.109 0.891 41 H 0.098 0.902 42 H 0.076 0.924 43 H 0.037 0.963 44 H 0.035 0.965 45 H 0.247 0.753 46 H 0.054 0.946 47 H 0.064 0.936 48 H 0.076 0.924 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.091 -1.135 -19.663 19.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.271 5.271 3 C -0.084 4.084 4 C -0.145 4.145 5 C -0.154 4.154 6 H 0.129 0.871 7 C 0.311 3.689 8 O -0.459 6.459 9 N -0.368 5.368 10 C 0.008 3.992 11 C -0.001 4.001 12 H 0.104 0.896 13 C -0.172 4.172 14 C -0.172 4.172 15 C 0.037 3.963 16 C 0.043 3.957 17 N -0.364 5.364 18 C -0.361 4.361 19 H 0.101 0.899 20 C -0.261 4.261 21 N -0.604 5.604 22 Si 0.806 3.194 23 H -0.212 1.212 24 H -0.223 1.223 25 H -0.192 1.192 26 C -0.018 4.018 27 O -0.282 6.282 28 C -0.071 4.071 29 H 0.050 0.950 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.246 0.754 37 H 0.075 0.925 38 H 0.115 0.885 39 H 0.103 0.897 40 H 0.127 0.873 41 H 0.116 0.884 42 H 0.095 0.905 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.056 0.944 46 H 0.072 0.928 47 H 0.082 0.918 48 H 0.094 0.906 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.671 -0.820 -20.196 20.544 hybrid contribution -1.462 0.576 1.994 2.539 sum 2.209 -0.244 -18.202 18.337 Atomic orbital electron populations 1.22629 0.86273 1.02838 1.01400 1.63603 1.09284 1.15046 1.39165 1.23126 0.94872 0.89175 1.01184 1.22557 0.98105 0.98486 0.95321 1.22618 0.94616 0.98131 1.00066 0.87069 1.20679 0.90747 0.79316 0.78114 1.90663 1.28829 1.66018 1.60410 1.45996 1.11050 1.36049 1.43711 1.21470 0.87728 0.93984 0.95998 1.23462 0.95172 0.94208 0.87214 0.89570 1.22909 0.97267 1.02136 0.94873 1.22710 0.94584 1.02423 0.97508 1.23311 0.94270 0.89424 0.89317 1.22104 0.84111 0.97986 0.91543 1.46270 1.02436 1.42312 1.45406 1.19407 0.84526 1.16081 1.16089 0.89866 1.25616 1.01143 0.99280 1.00048 1.70019 1.30243 1.27507 1.32629 0.85091 0.79405 0.76538 0.78391 1.21204 1.22254 1.19156 1.23144 0.92968 0.93594 0.92070 1.89041 1.79275 1.39164 1.20685 1.22764 0.97468 0.96350 0.90562 0.95003 0.90218 0.90789 0.88957 0.92187 0.89817 0.90954 0.75375 0.92485 0.88519 0.89668 0.87258 0.88363 0.90502 0.94558 0.94645 0.94416 0.92767 0.91811 0.90612 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.12 127.69 1.16 1.40 16 2 N -0.55 -9.78 5.44 -911.70 -4.96 -14.74 16 3 C 0.04 0.70 6.73 86.77 0.58 1.29 16 4 C -0.11 -2.10 6.13 31.98 0.20 -1.90 16 5 C -0.13 -2.75 3.34 -10.36 -0.03 -2.79 16 6 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 7 C 0.52 13.89 7.02 87.65 0.62 14.50 16 8 O -0.58 -19.23 15.76 -3.04 -0.05 -19.28 16 9 N -0.72 -17.70 5.46 -463.05 -2.53 -20.23 16 10 C 0.13 3.17 5.29 86.38 0.46 3.63 16 11 C 0.06 1.39 3.34 31.12 0.10 1.50 16 12 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 13 C -0.13 -2.64 6.65 31.71 0.21 -2.42 16 14 C -0.13 -3.40 6.49 31.34 0.20 -3.20 16 15 C 0.08 2.82 1.28 -10.66 -0.01 2.81 16 16 C 0.17 8.16 7.02 86.09 0.60 8.76 16 17 N -0.64 -33.10 3.71 -740.98 -2.75 -35.85 16 18 C -0.23 -13.26 10.70 84.03 0.90 -12.36 16 19 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 20 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 21 N -0.95 -59.03 11.40 21.65 0.25 -58.79 16 22 Si 0.98 46.26 29.55 68.60 2.03 48.28 16 23 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 24 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 C 0.11 4.14 8.44 86.10 0.73 4.87 16 27 O -0.36 -13.18 11.10 -148.98 -1.65 -14.83 16 28 C 0.06 1.05 6.43 86.65 0.56 1.61 16 29 H 0.03 0.44 8.10 -2.38 -0.02 0.42 16 30 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.06 0.85 7.78 -2.39 -0.02 0.83 16 34 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.07 1.69 7.49 -2.38 -0.02 1.67 16 36 H 0.41 9.56 8.46 -92.70 -0.78 8.77 16 37 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.08 1.55 7.87 -2.38 -0.02 1.54 16 40 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.10 2.09 7.83 -2.39 -0.02 2.08 16 42 H 0.08 1.98 8.12 -2.39 -0.02 1.96 16 43 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 44 H 0.04 2.01 7.19 -2.39 -0.02 1.99 16 45 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 46 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 47 H 0.06 2.21 7.95 -2.39 -0.02 2.19 16 48 H 0.08 1.49 7.81 -2.39 -0.02 1.47 16 49 H 0.07 1.24 7.58 -2.39 -0.02 1.22 16 Total: -1.00 -75.32 389.11 -2.78 -78.10 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 0.14 Total: 23.12 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: 6.74 Total: 14.22 kcal Atomic # 7 Polarization: -119.61 SS G_CDS: -9.99 Total: -129.60 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -1.70 Total: -34.12 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.28 kcal Total: -75.32 -2.78 -78.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053698059.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.963 kcal (2) G-P(sol) polarization free energy of solvation -75.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds