Wall clock time and date at job start Fri Apr 10 2020 18:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47839 * 111.00071 * 2 1 4 4 C 1.54906 * 104.79561 * 146.36426 * 3 2 1 5 5 C 1.55138 * 101.65189 * 322.92967 * 4 3 2 6 6 H 1.08995 * 110.85990 * 277.20217 * 5 4 3 7 7 C 1.50702 * 110.70352 * 154.03374 * 5 4 3 8 8 O 1.21283 * 120.00262 * 4.95180 * 7 5 4 9 9 N 1.34777 * 119.99928 * 184.67085 * 7 5 4 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 5 11 11 C 1.52997 * 109.47555 * 180.02562 * 10 9 7 12 12 H 1.08994 * 110.52949 * 303.65147 * 11 10 9 13 13 C 1.55048 * 110.59430 * 180.67391 * 11 10 9 14 14 C 1.54994 * 102.12325 * 204.86313 * 13 11 10 15 15 C 1.53435 * 103.84652 * 20.87201 * 14 13 11 16 16 C 1.53224 * 115.02022 * 132.26300 * 15 14 13 17 17 N 1.47727 * 85.89946 * 93.03609 * 16 15 14 18 18 C 1.36931 * 134.43132 * 204.09695 * 17 16 15 19 19 H 1.08000 * 119.99896 * 180.02562 * 18 17 16 20 20 C 1.38810 * 120.00317 * 0.02905 * 18 17 16 21 21 N 1.31622 * 120.00053 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00164 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46940 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46694 * 120.00208 * 22 20 18 25 25 H 1.48493 * 109.47050 * 240.00147 * 22 20 18 26 26 C 1.47725 * 91.13056 * 24.11805 * 17 16 15 27 27 O 1.42963 * 108.17417 * 1.66711 * 15 14 13 28 28 C 1.47436 * 110.99782 * 120.84706 * 2 1 3 29 29 H 1.09000 * 109.47138 * 299.15679 * 1 2 3 30 30 H 1.09003 * 109.47093 * 59.15724 * 1 2 3 31 31 H 1.09005 * 109.47316 * 179.15321 * 1 2 3 32 32 H 1.08996 * 110.37875 * 265.19720 * 3 2 1 33 33 H 1.09006 * 110.37656 * 27.53552 * 3 2 1 34 34 H 1.09006 * 110.98826 * 204.84266 * 4 3 2 35 35 H 1.08996 * 110.98844 * 81.02139 * 4 3 2 36 36 H 0.97000 * 120.00317 * 0.28382 * 9 7 5 37 37 H 1.08998 * 109.47134 * 300.00670 * 10 9 7 38 38 H 1.09002 * 109.46857 * 59.99862 * 10 9 7 39 39 H 1.09005 * 110.87263 * 323.02587 * 13 11 10 40 40 H 1.08999 * 110.87080 * 86.70528 * 13 11 10 41 41 H 1.08997 * 110.55459 * 262.27640 * 14 13 11 42 42 H 1.09005 * 110.67146 * 139.51665 * 14 13 11 43 43 H 1.08992 * 113.80612 * 207.28384 * 16 15 14 44 44 H 1.09005 * 113.79925 * 338.79415 * 16 15 14 45 45 H 0.96998 * 120.00183 * 179.97438 * 21 20 18 46 46 H 1.09002 * 113.79992 * 221.63382 * 26 17 16 47 47 H 1.08998 * 113.90964 * 90.14112 * 26 17 16 48 48 H 1.09003 * 109.88792 * 117.33831 * 28 2 1 49 49 H 1.09003 * 109.89405 * 356.14545 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3047 1.3026 0.8296 5 6 2.9158 0.2821 1.9314 6 1 2.3752 0.7722 2.7411 7 6 4.1383 -0.4232 2.4598 8 8 5.2414 -0.0919 2.0797 9 7 4.0062 -1.4184 3.3591 10 6 5.1949 -2.1000 3.8773 11 6 4.7697 -3.1801 4.8740 12 1 4.1691 -2.7471 5.6738 13 6 6.0108 -3.9077 5.4522 14 6 5.4207 -5.2804 5.8643 15 6 4.1390 -5.3949 5.0287 16 6 3.9552 -6.7324 4.3039 17 7 3.1857 -7.1503 5.4937 18 6 2.8807 -8.3581 6.0624 19 1 2.2821 -8.3962 6.9605 20 6 3.3409 -9.5333 5.4846 21 7 4.0710 -9.4869 4.3904 22 14 2.9254 -11.1809 6.2609 23 1 2.0989 -10.9616 7.4750 24 1 2.1667 -12.0085 5.2890 25 1 4.1796 -11.8820 6.6353 26 6 2.8766 -5.7441 5.8240 27 8 4.0397 -4.2322 4.2028 28 6 1.9973 -0.7058 1.1817 29 1 -0.3633 0.5007 0.8974 30 1 -0.3633 0.5269 -0.8824 31 1 -0.3634 -1.0276 -0.0152 32 1 2.2147 1.7039 -1.0182 33 1 1.2890 2.0592 0.4724 34 1 3.5495 2.2719 1.2640 35 1 4.1301 0.9281 0.2242 36 1 3.1240 -1.6834 3.6631 37 1 5.7381 -2.5609 3.0523 38 1 5.8392 -1.3769 4.3775 39 1 6.7802 -4.0288 4.6896 40 1 6.4027 -3.3771 6.3199 41 1 5.1860 -5.2920 6.9286 42 1 6.1119 -6.0862 5.6171 43 1 3.3571 -6.6620 3.3955 44 1 4.8828 -7.2872 4.1627 45 1 4.3929 -10.3081 3.9869 46 1 2.9494 -5.5158 6.8874 47 1 1.9558 -5.3761 5.3715 48 1 2.5697 -1.5785 0.8673 49 1 1.1755 -1.0121 1.8290 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053698060.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:30 Heat of formation + Delta-G solvation = -18.336198 kcal Electronic energy + Delta-G solvation = -27886.844708 eV Core-core repulsion = 24043.655092 eV Total energy + Delta-G solvation = -3843.189616 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.45426 -39.80866 -38.34041 -36.54940 -34.56267 -32.54642 -32.07522 -31.82336 -29.96862 -28.76739 -26.96245 -26.08478 -24.99616 -23.99184 -22.37458 -21.68231 -21.34237 -21.23219 -19.97972 -18.79674 -17.56531 -16.81075 -16.57895 -16.54070 -15.92677 -15.40208 -15.00322 -14.93513 -14.55987 -14.32968 -14.09034 -13.82624 -13.73643 -13.68267 -13.33266 -13.08575 -12.65659 -12.36797 -12.18344 -12.03073 -11.93769 -11.78061 -11.63639 -11.49389 -11.41020 -11.19305 -11.12447 -10.98418 -10.87891 -10.63360 -10.54467 -10.23159 -10.01844 -9.88451 -9.61664 -9.15755 -8.91562 -8.80039 -8.67256 -6.93228 -5.80729 -3.13475 2.50345 3.02343 3.36666 3.41665 3.44679 3.66243 3.99446 4.13028 4.33533 4.45011 4.60375 4.74257 4.87188 4.94296 4.96014 4.98683 5.05593 5.06546 5.13684 5.14467 5.23437 5.28263 5.40120 5.46476 5.52798 5.54999 5.56964 5.63266 5.65176 5.71437 5.74492 5.93794 5.94927 6.03922 6.27832 6.33145 6.36614 6.47898 6.57008 6.57617 6.68824 6.69445 6.99290 7.21295 7.38961 7.49306 7.60565 7.93034 8.10193 9.00459 9.66380 10.54425 11.36702 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.017532 B = 0.002555 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.705077 B =10957.251460 C =12078.307001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.533 5.533 3 C 0.039 3.961 4 C -0.108 4.108 5 C -0.133 4.133 6 H 0.101 0.899 7 C 0.525 3.475 8 O -0.541 6.541 9 N -0.721 5.721 10 C 0.128 3.872 11 C 0.062 3.938 12 H 0.071 0.929 13 C -0.146 4.146 14 C -0.112 4.112 15 C 0.052 3.948 16 C 0.177 3.823 17 N -0.604 5.604 18 C -0.221 4.221 19 H 0.081 0.919 20 C -0.007 4.007 21 N -0.919 5.919 22 Si 0.913 3.087 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.108 3.892 27 O -0.359 6.359 28 C 0.051 3.949 29 H 0.027 0.973 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.048 0.952 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.405 0.595 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.034 0.966 44 H 0.078 0.922 45 H 0.254 0.746 46 H 0.043 0.957 47 H 0.039 0.961 48 H 0.086 0.914 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.351 22.307 -2.965 22.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.257 5.257 3 C -0.088 4.088 4 C -0.146 4.146 5 C -0.156 4.156 6 H 0.119 0.881 7 C 0.310 3.690 8 O -0.418 6.418 9 N -0.372 5.372 10 C 0.004 3.996 11 C 0.004 3.996 12 H 0.089 0.911 13 C -0.184 4.184 14 C -0.150 4.150 15 C 0.012 3.988 16 C 0.051 3.949 17 N -0.332 5.332 18 C -0.349 4.349 19 H 0.099 0.901 20 C -0.204 4.204 21 N -0.566 5.566 22 Si 0.743 3.257 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.216 1.216 26 C -0.019 4.019 27 O -0.278 6.278 28 C -0.077 4.077 29 H 0.046 0.954 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.239 0.761 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.051 0.949 44 H 0.096 0.904 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.056 0.944 48 H 0.105 0.895 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.507 21.940 -3.863 22.328 hybrid contribution -1.083 -0.776 1.473 1.986 sum -2.589 21.164 -2.390 21.455 Atomic orbital electron populations 1.22580 0.87328 1.02487 1.00624 1.63567 1.08174 1.14436 1.39502 1.23125 0.95443 0.89322 1.00920 1.22596 0.98057 0.98370 0.95571 1.22596 0.95507 0.97897 0.99560 0.88079 1.20268 0.90494 0.79722 0.78508 1.90698 1.27362 1.65172 1.58575 1.45949 1.10665 1.36144 1.44457 1.21460 0.87632 0.93105 0.97383 1.23307 0.93123 0.89386 0.93810 0.91077 1.23139 0.97572 0.96528 1.01196 1.22423 0.96130 0.96459 1.00008 1.24286 0.95044 0.86572 0.92898 1.22313 0.96801 0.85817 0.89922 1.45674 1.60374 0.99652 1.27545 1.19007 1.28025 0.81429 1.06427 0.90088 1.24804 1.00405 0.97655 0.97546 1.69825 1.39367 1.26541 1.20873 0.86033 0.77580 0.83816 0.78242 1.20461 1.21686 1.21648 1.22990 0.95142 0.86706 0.97047 1.88820 1.73566 1.19945 1.45431 1.22844 0.97469 0.96966 0.90392 0.95396 0.91259 0.91004 0.89765 0.93405 0.90326 0.89118 0.76068 0.90474 0.90399 0.90313 0.90485 0.90792 0.89831 0.94863 0.90355 0.93568 0.93863 0.94369 0.89522 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.12 60.07 0.55 0.68 16 2 N -0.53 -4.99 5.44 -239.52 -1.30 -6.29 16 3 C 0.04 0.31 6.73 -2.30 -0.02 0.30 16 4 C -0.11 -0.96 6.13 -24.59 -0.15 -1.11 16 5 C -0.13 -1.20 3.34 -89.95 -0.30 -1.50 16 6 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 7 C 0.52 6.23 7.02 -10.98 -0.08 6.15 16 8 O -0.54 -8.36 15.76 5.55 0.09 -8.27 16 9 N -0.72 -7.90 5.49 -60.29 -0.33 -8.23 16 10 C 0.13 1.50 5.41 -4.04 -0.02 1.48 16 11 C 0.06 0.78 3.39 -25.65 -0.09 0.70 16 12 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 13 C -0.15 -1.82 6.60 -24.60 -0.16 -1.98 16 14 C -0.11 -1.83 6.46 -25.45 -0.16 -1.99 16 15 C 0.05 0.99 1.56 -90.28 -0.14 0.85 16 16 C 0.18 4.24 7.00 -3.26 -0.02 4.21 16 17 N -0.60 -15.41 3.68 -181.52 -0.67 -16.08 16 18 C -0.22 -6.15 10.70 -15.06 -0.16 -6.31 16 19 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 20 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 21 N -0.92 -27.07 11.39 55.49 0.63 -26.44 16 22 Si 0.91 21.94 29.55 -169.99 -5.02 16.91 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 C 0.11 2.21 8.43 -3.26 -0.03 2.18 16 27 O -0.36 -6.02 10.98 -35.23 -0.39 -6.41 16 28 C 0.05 0.48 6.44 -2.84 -0.02 0.46 16 29 H 0.03 0.19 8.10 -51.93 -0.42 -0.24 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.32 7.78 -51.93 -0.40 -0.08 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 1.00 7.49 -51.93 -0.39 0.61 16 36 H 0.40 3.85 8.47 -40.82 -0.35 3.50 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.08 0.96 8.05 -51.93 -0.42 0.54 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 1.17 7.74 -51.93 -0.40 0.77 16 42 H 0.08 1.48 7.75 -51.93 -0.40 1.08 16 43 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.08 2.04 6.89 -51.93 -0.36 1.68 16 45 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 46 H 0.04 0.82 7.85 -51.93 -0.41 0.42 16 47 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.09 0.97 7.81 -51.93 -0.41 0.57 16 49 H 0.06 0.53 7.58 -51.93 -0.39 0.13 16 LS Contribution 388.66 15.07 5.86 5.86 Total: -1.00 -32.80 388.66 -10.58 -43.37 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -8.54 Total: 1.76 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -0.90 Total: 3.81 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -1.67 Total: -57.04 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -0.30 Total: -14.68 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.80 -10.58 -43.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053698060.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.038 kcal (2) G-P(sol) polarization free energy of solvation -32.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds