Wall clock time and date at job start Fri Apr 10 2020 18:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47839 * 111.00071 * 2 1 4 4 C 1.54906 * 104.79561 * 146.36426 * 3 2 1 5 5 C 1.55138 * 101.65189 * 322.92967 * 4 3 2 6 6 H 1.08995 * 110.85990 * 277.20217 * 5 4 3 7 7 C 1.50702 * 110.70352 * 154.03374 * 5 4 3 8 8 O 1.21283 * 120.00262 * 4.95180 * 7 5 4 9 9 N 1.34777 * 119.99928 * 184.67085 * 7 5 4 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 5 11 11 C 1.52997 * 109.47555 * 180.02562 * 10 9 7 12 12 H 1.08994 * 110.52949 * 303.65147 * 11 10 9 13 13 C 1.55048 * 110.59430 * 180.67391 * 11 10 9 14 14 C 1.54994 * 102.12325 * 204.86313 * 13 11 10 15 15 C 1.53435 * 103.84652 * 20.87201 * 14 13 11 16 16 C 1.53224 * 115.02022 * 132.26300 * 15 14 13 17 17 N 1.47727 * 85.89946 * 93.03609 * 16 15 14 18 18 C 1.36931 * 134.43132 * 204.09695 * 17 16 15 19 19 H 1.08000 * 119.99896 * 180.02562 * 18 17 16 20 20 C 1.38810 * 120.00317 * 0.02905 * 18 17 16 21 21 N 1.31622 * 120.00053 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00164 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46940 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46694 * 120.00208 * 22 20 18 25 25 H 1.48493 * 109.47050 * 240.00147 * 22 20 18 26 26 C 1.47725 * 91.13056 * 24.11805 * 17 16 15 27 27 O 1.42963 * 108.17417 * 1.66711 * 15 14 13 28 28 C 1.47436 * 110.99782 * 120.84706 * 2 1 3 29 29 H 1.09000 * 109.47138 * 299.15679 * 1 2 3 30 30 H 1.09003 * 109.47093 * 59.15724 * 1 2 3 31 31 H 1.09005 * 109.47316 * 179.15321 * 1 2 3 32 32 H 1.08996 * 110.37875 * 265.19720 * 3 2 1 33 33 H 1.09006 * 110.37656 * 27.53552 * 3 2 1 34 34 H 1.09006 * 110.98826 * 204.84266 * 4 3 2 35 35 H 1.08996 * 110.98844 * 81.02139 * 4 3 2 36 36 H 0.97000 * 120.00317 * 0.28382 * 9 7 5 37 37 H 1.08998 * 109.47134 * 300.00670 * 10 9 7 38 38 H 1.09002 * 109.46857 * 59.99862 * 10 9 7 39 39 H 1.09005 * 110.87263 * 323.02587 * 13 11 10 40 40 H 1.08999 * 110.87080 * 86.70528 * 13 11 10 41 41 H 1.08997 * 110.55459 * 262.27640 * 14 13 11 42 42 H 1.09005 * 110.67146 * 139.51665 * 14 13 11 43 43 H 1.08992 * 113.80612 * 207.28384 * 16 15 14 44 44 H 1.09005 * 113.79925 * 338.79415 * 16 15 14 45 45 H 0.96998 * 120.00183 * 179.97438 * 21 20 18 46 46 H 1.09002 * 113.79992 * 221.63382 * 26 17 16 47 47 H 1.08998 * 113.90964 * 90.14112 * 26 17 16 48 48 H 1.09003 * 109.88792 * 117.33831 * 28 2 1 49 49 H 1.09003 * 109.89405 * 356.14545 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3047 1.3026 0.8296 5 6 2.9158 0.2821 1.9314 6 1 2.3752 0.7722 2.7411 7 6 4.1383 -0.4232 2.4598 8 8 5.2414 -0.0919 2.0797 9 7 4.0062 -1.4184 3.3591 10 6 5.1949 -2.1000 3.8773 11 6 4.7697 -3.1801 4.8740 12 1 4.1691 -2.7471 5.6738 13 6 6.0108 -3.9077 5.4522 14 6 5.4207 -5.2804 5.8643 15 6 4.1390 -5.3949 5.0287 16 6 3.9552 -6.7324 4.3039 17 7 3.1857 -7.1503 5.4937 18 6 2.8807 -8.3581 6.0624 19 1 2.2821 -8.3962 6.9605 20 6 3.3409 -9.5333 5.4846 21 7 4.0710 -9.4869 4.3904 22 14 2.9254 -11.1809 6.2609 23 1 2.0989 -10.9616 7.4750 24 1 2.1667 -12.0085 5.2890 25 1 4.1796 -11.8820 6.6353 26 6 2.8766 -5.7441 5.8240 27 8 4.0397 -4.2322 4.2028 28 6 1.9973 -0.7058 1.1817 29 1 -0.3633 0.5007 0.8974 30 1 -0.3633 0.5269 -0.8824 31 1 -0.3634 -1.0276 -0.0152 32 1 2.2147 1.7039 -1.0182 33 1 1.2890 2.0592 0.4724 34 1 3.5495 2.2719 1.2640 35 1 4.1301 0.9281 0.2242 36 1 3.1240 -1.6834 3.6631 37 1 5.7381 -2.5609 3.0523 38 1 5.8392 -1.3769 4.3775 39 1 6.7802 -4.0288 4.6896 40 1 6.4027 -3.3771 6.3199 41 1 5.1860 -5.2920 6.9286 42 1 6.1119 -6.0862 5.6171 43 1 3.3571 -6.6620 3.3955 44 1 4.8828 -7.2872 4.1627 45 1 4.3929 -10.3081 3.9869 46 1 2.9494 -5.5158 6.8874 47 1 1.9558 -5.3761 5.3715 48 1 2.5697 -1.5785 0.8673 49 1 1.1755 -1.0121 1.8290 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053698060.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:29 Heat of formation + Delta-G solvation = -42.898402 kcal Electronic energy + Delta-G solvation = -27887.909805 eV Core-core repulsion = 24043.655092 eV Total energy + Delta-G solvation = -3844.254713 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.49413 -41.06423 -39.17232 -38.05963 -35.68760 -34.10396 -33.29731 -32.97648 -30.98543 -29.91960 -28.57091 -26.82142 -26.75579 -25.28992 -23.69729 -22.92765 -22.34318 -21.96018 -20.87301 -20.38322 -18.77644 -18.42150 -17.74527 -17.30755 -17.01016 -16.86506 -16.28176 -16.13516 -15.83711 -15.55870 -15.35314 -14.95935 -14.78714 -14.65943 -14.42045 -14.13409 -13.99681 -13.66579 -13.32438 -13.27236 -12.97177 -12.88506 -12.84960 -12.61728 -12.58981 -12.40084 -12.32743 -12.17981 -12.16333 -12.01996 -11.83901 -11.81058 -11.62245 -11.46419 -10.89416 -10.86139 -10.37324 -10.11820 -9.31652 -8.97875 -7.93174 -5.27800 1.45327 1.46685 1.56995 1.58019 2.14223 2.42610 2.79060 3.02128 3.25928 3.41037 3.43815 3.57313 3.61177 3.71276 3.78278 3.90347 4.02115 4.13839 4.22572 4.30838 4.34136 4.46325 4.46917 4.53073 4.54653 4.59563 4.67599 4.74202 4.82418 4.86000 4.92422 4.93155 4.97831 5.00778 5.03674 5.08099 5.11225 5.15057 5.20383 5.22108 5.38422 5.41635 5.48417 5.86761 5.93082 6.08852 6.15409 6.51159 6.87657 7.20116 7.57025 8.51422 9.24392 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.017532 B = 0.002555 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.705077 B =10957.251460 C =12078.307001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.556 5.556 3 C 0.044 3.956 4 C -0.108 4.108 5 C -0.125 4.125 6 H 0.131 0.869 7 C 0.522 3.478 8 O -0.581 6.581 9 N -0.715 5.715 10 C 0.132 3.868 11 C 0.064 3.936 12 H 0.098 0.902 13 C -0.135 4.135 14 C -0.112 4.112 15 C 0.079 3.921 16 C 0.169 3.831 17 N -0.630 5.630 18 C -0.231 4.231 19 H 0.089 0.911 20 C -0.068 4.068 21 N -0.954 5.954 22 Si 0.982 3.018 23 H -0.262 1.262 24 H -0.295 1.295 25 H -0.290 1.290 26 C 0.110 3.890 27 O -0.373 6.373 28 C 0.055 3.945 29 H 0.041 0.959 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.062 0.938 36 H 0.414 0.586 37 H 0.055 0.945 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.113 0.887 41 H 0.085 0.915 42 H 0.060 0.940 43 H 0.007 0.993 44 H 0.047 0.953 45 H 0.249 0.751 46 H 0.067 0.933 47 H 0.044 0.956 48 H 0.058 0.942 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.426 24.483 -0.962 24.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.280 5.280 3 C -0.083 4.083 4 C -0.146 4.146 5 C -0.147 4.147 6 H 0.149 0.851 7 C 0.309 3.691 8 O -0.461 6.461 9 N -0.366 5.366 10 C 0.008 3.992 11 C 0.007 3.993 12 H 0.116 0.884 13 C -0.173 4.173 14 C -0.150 4.150 15 C 0.038 3.962 16 C 0.043 3.957 17 N -0.359 5.359 18 C -0.359 4.359 19 H 0.107 0.893 20 C -0.261 4.261 21 N -0.603 5.603 22 Si 0.810 3.190 23 H -0.186 1.186 24 H -0.222 1.222 25 H -0.217 1.217 26 C -0.015 4.015 27 O -0.292 6.292 28 C -0.074 4.074 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.111 0.889 35 H 0.081 0.919 36 H 0.250 0.750 37 H 0.073 0.927 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.132 0.868 41 H 0.103 0.897 42 H 0.079 0.921 43 H 0.025 0.975 44 H 0.065 0.935 45 H 0.058 0.942 46 H 0.085 0.915 47 H 0.061 0.939 48 H 0.077 0.923 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.618 24.147 -1.833 24.358 hybrid contribution -0.766 -1.392 0.788 1.774 sum -3.384 22.755 -1.045 23.029 Atomic orbital electron populations 1.22603 0.86153 1.02547 1.01650 1.63512 1.09440 1.15386 1.39678 1.23124 0.95119 0.88974 1.01073 1.22570 0.97729 0.98861 0.95463 1.22608 0.94236 0.97574 1.00236 0.85127 1.20766 0.90821 0.79527 0.77950 1.90682 1.29103 1.66453 1.59895 1.45926 1.10930 1.35641 1.44103 1.21387 0.87996 0.93183 0.96615 1.23544 0.93151 0.88283 0.94314 0.88391 1.23133 0.97282 0.94257 1.02608 1.22390 0.94459 0.98113 1.00051 1.23722 0.95752 0.85165 0.91560 1.22175 0.94914 0.89233 0.89399 1.45997 1.60919 1.01030 1.27923 1.19433 1.27258 0.82684 1.06575 0.89329 1.25689 1.00843 1.01280 0.98313 1.70032 1.40872 1.26897 1.22504 0.84965 0.77213 0.79150 0.77716 1.18616 1.22178 1.21733 1.23127 0.95939 0.83826 0.98598 1.88797 1.74322 1.20215 1.45861 1.22744 0.97673 0.96215 0.90740 0.94088 0.90462 0.91479 0.89647 0.91407 0.88930 0.91930 0.75017 0.92701 0.88571 0.90354 0.86837 0.89681 0.92123 0.97521 0.93474 0.94229 0.91502 0.93864 0.92319 0.90117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.12 127.69 1.16 1.41 16 2 N -0.56 -9.71 5.44 -911.70 -4.96 -14.67 16 3 C 0.04 0.62 6.73 86.77 0.58 1.20 16 4 C -0.11 -1.80 6.13 31.98 0.20 -1.60 16 5 C -0.12 -2.02 3.34 -10.36 -0.03 -2.06 16 6 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 7 C 0.52 11.87 7.02 87.66 0.61 12.49 16 8 O -0.58 -17.88 15.76 -3.04 -0.05 -17.93 16 9 N -0.71 -14.44 5.49 -463.06 -2.54 -16.98 16 10 C 0.13 2.86 5.41 86.38 0.47 3.33 16 11 C 0.06 1.45 3.39 31.29 0.11 1.55 16 12 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 13 C -0.13 -2.98 6.60 31.98 0.21 -2.77 16 14 C -0.11 -3.51 6.46 31.42 0.20 -3.30 16 15 C 0.08 2.94 1.56 -10.45 -0.02 2.92 16 16 C 0.17 8.42 7.00 86.22 0.60 9.03 16 17 N -0.63 -32.55 3.68 -733.61 -2.70 -35.25 16 18 C -0.23 -12.94 10.70 84.03 0.90 -12.04 16 19 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 20 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 21 N -0.95 -58.31 11.39 21.65 0.25 -58.06 16 22 Si 0.98 45.63 29.55 68.60 2.03 47.66 16 23 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 24 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 25 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 26 C 0.11 4.38 8.43 86.22 0.73 5.11 16 27 O -0.37 -12.11 10.98 -148.98 -1.64 -13.75 16 28 C 0.05 0.96 6.44 86.65 0.56 1.52 16 29 H 0.04 0.43 8.10 -2.39 -0.02 0.41 16 30 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.07 0.70 7.78 -2.38 -0.02 0.68 16 34 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.06 1.41 7.49 -2.39 -0.02 1.39 16 36 H 0.41 6.90 8.47 -92.71 -0.78 6.12 16 37 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.08 1.77 8.05 -2.38 -0.02 1.75 16 40 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.08 2.47 7.74 -2.39 -0.02 2.46 16 42 H 0.06 2.18 7.75 -2.38 -0.02 2.16 16 43 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 44 H 0.05 2.61 6.89 -2.38 -0.02 2.60 16 45 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 46 H 0.07 2.36 7.85 -2.39 -0.02 2.34 16 47 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.06 1.34 7.81 -2.39 -0.02 1.33 16 49 H 0.08 1.14 7.58 -2.39 -0.02 1.12 16 Total: -1.00 -74.06 388.66 -2.72 -76.78 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.14 Total: 18.86 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: 6.75 Total: 13.34 kcal Atomic # 7 Polarization: -115.01 SS G_CDS: -9.96 Total: -124.96 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -1.68 Total: -31.67 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -74.06 -2.72 -76.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053698060.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.884 kcal (2) G-P(sol) polarization free energy of solvation -74.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds