Wall clock time and date at job start Fri Apr 10 2020 18:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21278 * 119.99816 * 2 1 4 4 N 1.34778 * 119.99793 * 180.02562 * 2 1 3 5 5 C 1.46505 * 119.99470 * 175.11410 * 4 2 1 6 6 C 1.50706 * 109.47098 * 303.03562 * 5 4 2 7 7 O 1.21275 * 119.99722 * 135.42744 * 6 5 4 8 8 N 1.34771 * 119.99801 * 315.70408 * 6 5 4 9 9 C 1.47426 * 125.65094 * 4.07012 * 8 6 5 10 10 C 1.55127 * 104.72200 * 155.82093 * 9 8 6 11 11 C 1.55154 * 101.48659 * 37.29692 * 10 9 8 12 12 H 1.09008 * 110.71655 * 82.69565 * 11 10 9 13 13 N 1.46495 * 110.87499 * 205.89516 * 11 10 9 14 14 C 1.36943 * 120.00335 * 268.61298 * 13 11 10 15 15 H 1.07994 * 119.99984 * 0.02562 * 14 13 11 16 16 C 1.38816 * 120.00000 * 179.97438 * 14 13 11 17 17 N 1.31617 * 119.99919 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 120.00066 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47431 * 89.99435 * 18 16 14 20 20 H 1.48497 * 109.46831 * 209.99673 * 18 16 14 21 21 H 1.48503 * 109.46666 * 329.99449 * 18 16 14 22 22 C 1.47020 * 125.64919 * 184.38650 * 8 6 5 23 23 C 1.53001 * 109.47248 * 63.03471 * 5 4 2 24 24 C 1.53004 * 109.46926 * 59.99795 * 23 5 4 25 25 C 1.53006 * 109.46869 * 60.00307 * 24 23 5 26 26 C 1.53004 * 109.46580 * 299.99637 * 25 24 23 27 27 C 1.52990 * 109.47393 * 60.00536 * 26 25 24 28 28 H 1.08997 * 109.47070 * 269.99968 * 1 2 3 29 29 H 1.09002 * 109.47187 * 30.00026 * 1 2 3 30 30 H 1.09003 * 109.46500 * 150.00007 * 1 2 3 31 31 H 0.96992 * 120.00131 * 355.11367 * 4 2 1 32 32 H 1.08997 * 110.36959 * 274.74982 * 9 8 6 33 33 H 1.09000 * 110.36365 * 37.07811 * 9 8 6 34 34 H 1.09003 * 111.19395 * 279.19246 * 10 9 8 35 35 H 1.09001 * 110.94013 * 155.29077 * 10 9 8 36 36 H 0.97002 * 119.99874 * 88.60640 * 13 11 10 37 37 H 0.96997 * 119.99942 * 180.02562 * 17 16 14 38 38 H 1.09004 * 109.88176 * 300.43907 * 22 8 6 39 39 H 1.09003 * 109.88563 * 61.60202 * 22 8 6 40 40 H 1.08994 * 109.47081 * 179.97438 * 23 5 4 41 41 H 1.08996 * 109.47214 * 299.99855 * 23 5 4 42 42 H 1.08994 * 109.47323 * 299.99953 * 24 23 5 43 43 H 1.09002 * 109.46981 * 179.97438 * 24 23 5 44 44 H 1.08994 * 109.46944 * 180.02562 * 25 24 23 45 45 H 1.08994 * 109.47437 * 59.99716 * 25 24 23 46 46 H 1.09002 * 109.47512 * 299.99916 * 26 25 24 47 47 H 1.09005 * 109.46733 * 180.02562 * 26 25 24 48 48 H 1.09002 * 109.47150 * 179.97438 * 27 26 25 49 49 H 1.09002 * 109.47298 * 59.99249 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6420 -1.1694 -0.1086 6 6 4.0538 -0.4464 -1.3651 7 8 4.9673 0.3507 -1.3343 8 7 3.4034 -0.6816 -2.5218 9 6 2.2239 -1.5514 -2.6829 10 6 1.5125 -1.0193 -3.9546 11 6 2.7219 -0.6436 -4.8509 12 1 3.1041 -1.5221 -5.3709 13 7 2.3573 0.4046 -5.8072 14 6 1.8896 0.0660 -7.0490 15 1 1.7892 -0.9737 -7.3232 16 6 1.5436 1.0593 -7.9549 17 7 1.0937 0.7340 -9.1482 18 14 1.7167 2.8578 -7.4803 19 1 3.0721 3.3390 -7.8494 20 1 0.6939 3.6598 -8.1986 21 1 1.5213 3.0041 -6.0154 22 6 3.7564 -0.1185 -3.8332 23 6 4.2444 -0.4625 1.1072 24 6 3.8262 -1.1965 2.3829 25 6 4.3316 -2.6397 2.3299 26 6 3.7291 -3.3465 1.1140 27 6 4.1472 -2.6126 -0.1616 28 1 -0.3633 0.0000 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3632 -0.8900 -0.5139 31 1 1.6986 -2.0057 0.0707 32 1 2.5327 -2.5872 -2.8234 33 1 1.5674 -1.4644 -1.8171 34 1 0.9060 -0.1422 -3.7290 35 1 0.9096 -1.7997 -4.4190 36 1 2.4470 1.3384 -5.5607 37 1 0.8523 1.4280 -9.7813 38 1 3.7164 0.9700 -3.7922 39 1 4.7564 -0.4443 -4.1196 40 1 5.3314 -0.4645 1.0270 41 1 3.8844 0.5656 1.1450 42 1 2.7392 -1.1948 2.4634 43 1 4.2557 -0.6931 3.2491 44 1 4.0333 -3.1627 3.2384 45 1 5.4185 -2.6413 2.2495 46 1 2.6420 -3.3449 1.1944 47 1 4.0887 -4.3748 1.0764 48 1 3.7183 -3.1165 -1.0279 49 1 5.2342 -2.6142 -0.2420 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183712958.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:20 Heat of formation + Delta-G solvation = -78.569565 kcal Electronic energy + Delta-G solvation = -29813.361135 eV Core-core repulsion = 25967.559604 eV Total energy + Delta-G solvation = -3845.801531 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.43777 -40.19802 -39.18781 -38.33473 -36.14501 -34.98689 -33.52271 -32.11441 -31.82476 -31.10219 -29.68674 -29.42001 -25.92329 -24.61758 -23.71203 -23.43194 -22.12528 -21.77636 -20.81013 -20.15471 -19.76788 -18.22354 -18.14449 -17.57772 -16.96091 -16.72393 -16.42503 -16.04345 -15.82226 -15.38259 -15.16224 -14.91252 -14.85561 -14.65317 -14.46801 -14.24642 -13.73816 -13.64452 -13.50861 -13.41679 -13.29359 -13.23144 -13.18137 -13.02409 -12.92321 -12.80441 -12.31278 -12.22176 -12.11186 -11.86265 -11.77859 -11.73649 -11.48673 -11.24371 -11.08616 -10.99944 -10.72441 -10.01718 -9.69204 -9.36706 -8.06469 -5.40116 1.34033 1.36290 1.37570 1.41560 1.59697 1.88007 2.22297 2.43149 3.22529 3.31991 3.48966 3.58324 3.65347 3.76219 3.88908 3.90193 4.12988 4.18128 4.20811 4.22224 4.30932 4.40235 4.44511 4.47579 4.51020 4.59152 4.66175 4.67088 4.76036 4.78446 4.91205 4.99867 5.07068 5.09503 5.15784 5.16597 5.20857 5.22286 5.28380 5.36138 5.38098 5.40477 5.52593 5.73294 6.17673 6.43904 6.54460 7.00429 7.05633 7.23481 7.76207 7.93832 9.14317 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.021061 B = 0.003495 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.137893 B = 8010.266750 C = 8211.536848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.501 3.499 3 O -0.584 6.584 4 N -0.702 5.702 5 C 0.182 3.818 6 C 0.521 3.479 7 O -0.588 6.588 8 N -0.606 5.606 9 C 0.091 3.909 10 C -0.145 4.145 11 C 0.171 3.829 12 H 0.079 0.921 13 N -0.747 5.747 14 C -0.226 4.226 15 H 0.073 0.927 16 C -0.053 4.053 17 N -0.977 5.977 18 Si 0.941 3.059 19 H -0.283 1.283 20 H -0.292 1.292 21 H -0.265 1.265 22 C 0.103 3.897 23 C -0.114 4.114 24 C -0.107 4.107 25 C -0.120 4.120 26 C -0.109 4.109 27 C -0.118 4.118 28 H 0.119 0.881 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.426 0.574 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.056 0.944 35 H 0.095 0.905 36 H 0.360 0.640 37 H 0.258 0.742 38 H 0.035 0.965 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.047 0.953 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.084 0.916 45 H 0.057 0.943 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.094 0.906 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.753 -14.480 28.026 31.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.290 3.710 3 O -0.463 6.463 4 N -0.361 5.361 5 C 0.092 3.908 6 C 0.310 3.690 7 O -0.467 6.467 8 N -0.339 5.339 9 C -0.031 4.031 10 C -0.185 4.185 11 C 0.062 3.938 12 H 0.097 0.903 13 N -0.389 5.389 14 C -0.356 4.356 15 H 0.090 0.910 16 C -0.245 4.245 17 N -0.627 5.627 18 Si 0.770 3.230 19 H -0.210 1.210 20 H -0.218 1.218 21 H -0.190 1.190 22 C -0.022 4.022 23 C -0.153 4.153 24 C -0.144 4.144 25 C -0.157 4.157 26 C -0.146 4.146 27 C -0.156 4.156 28 H 0.137 0.863 29 H 0.098 0.902 30 H 0.135 0.865 31 H 0.267 0.733 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.075 0.925 35 H 0.113 0.887 36 H 0.193 0.807 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.102 0.898 45 H 0.076 0.924 46 H 0.104 0.896 47 H 0.110 0.890 48 H 0.112 0.888 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.118 -13.443 27.901 30.971 hybrid contribution 0.240 1.790 -0.692 1.934 sum 0.358 -11.653 27.209 29.602 Atomic orbital electron populations 1.21974 0.87821 1.06256 1.06651 1.21716 0.92377 0.82982 0.73897 1.90784 1.71766 1.33554 1.50199 1.46210 1.05304 1.09888 1.74675 1.20331 0.82152 0.97939 0.90400 1.21258 0.81445 0.81642 0.84670 1.90652 1.33374 1.36829 1.85893 1.48456 1.31335 1.47613 1.06526 1.23059 0.86082 0.94531 0.99399 1.23391 0.98258 1.01549 0.95340 1.21351 0.92764 0.91435 0.88276 0.90311 1.42774 1.78948 1.03937 1.13263 1.19036 1.33640 0.93816 0.89140 0.90953 1.25302 1.01923 1.01297 0.95992 1.69829 1.52167 1.33303 1.07383 0.85624 0.77360 0.82021 0.77997 1.20997 1.21802 1.19006 1.22071 0.99146 0.97416 0.83543 1.21679 1.00091 0.99423 0.94075 1.21462 1.01517 0.96344 0.95085 1.21592 1.00551 0.94312 0.99287 1.21544 1.02100 0.99424 0.91532 1.21875 1.02207 0.89791 1.01708 0.86275 0.90244 0.86535 0.73298 0.88172 0.87502 0.92545 0.88662 0.80669 0.93246 0.94639 0.91654 0.92279 0.93411 0.91105 0.91907 0.89755 0.92384 0.89569 0.89000 0.88776 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 10.26 71.24 0.73 -1.23 16 2 C 0.50 10.49 6.20 87.66 0.54 11.03 16 3 O -0.58 -20.03 14.34 -3.02 -0.04 -20.08 16 4 N -0.70 -10.18 1.82 -426.30 -0.78 -10.95 16 5 C 0.18 3.76 0.28 2.86 0.00 3.76 16 6 C 0.52 16.77 5.29 87.66 0.46 17.23 16 7 O -0.59 -25.13 16.33 -3.01 -0.05 -25.18 16 8 N -0.61 -18.11 3.32 -811.37 -2.70 -20.80 16 9 C 0.09 1.89 5.82 86.93 0.51 2.39 16 10 C -0.14 -4.12 6.79 32.06 0.22 -3.90 16 11 C 0.17 6.22 3.60 46.18 0.17 6.39 16 12 H 0.08 2.82 8.09 -2.38 -0.02 2.80 16 13 N -0.75 -34.86 5.03 -317.34 -1.60 -36.46 16 14 C -0.23 -12.46 10.44 84.03 0.88 -11.58 16 15 H 0.07 4.24 8.06 -2.91 -0.02 4.21 16 16 C -0.05 -3.09 5.50 84.86 0.47 -2.63 16 17 N -0.98 -61.60 13.97 21.65 0.30 -61.30 16 18 Si 0.94 46.84 27.74 68.60 1.90 48.75 16 19 H -0.28 -14.04 7.11 99.48 0.71 -13.33 16 20 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 21 H -0.26 -12.48 6.52 99.48 0.65 -11.83 16 22 C 0.10 3.70 6.62 86.73 0.57 4.28 16 23 C -0.11 -2.71 3.98 30.60 0.12 -2.58 16 24 C -0.11 -1.55 5.77 30.60 0.18 -1.37 16 25 C -0.12 -1.10 5.92 30.60 0.18 -0.92 16 26 C -0.11 -0.68 5.75 30.59 0.18 -0.50 16 27 C -0.12 -1.50 4.73 30.59 0.14 -1.36 16 28 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.43 2.21 6.87 -92.71 -0.64 1.58 16 32 H 0.10 1.47 7.61 -2.39 -0.02 1.45 16 33 H 0.11 1.63 4.20 -2.39 -0.01 1.62 16 34 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.36 17.21 5.43 -92.71 -0.50 16.71 16 37 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 38 H 0.04 1.49 7.72 -2.38 -0.02 1.47 16 39 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.06 1.58 7.94 -2.39 -0.02 1.56 16 41 H 0.05 1.54 6.23 -2.39 -0.01 1.52 16 42 H 0.07 0.90 7.60 -2.39 -0.02 0.88 16 43 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.09 0.20 6.80 -2.39 -0.02 0.18 16 47 H 0.09 0.32 8.14 -2.38 -0.02 0.30 16 48 H 0.09 0.92 7.00 -2.39 -0.02 0.90 16 49 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -85.84 371.65 2.15 -83.68 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: -0.24 Total: 23.34 kcal Atomic # 6 Polarization: 13.65 SS G_CDS: 5.35 Total: 19.00 kcal Atomic # 7 Polarization: -124.75 SS G_CDS: -4.77 Total: -129.52 kcal Atomic # 8 Polarization: -45.16 SS G_CDS: -0.09 Total: -45.25 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 1.90 Total: 48.75 kcal Total: -85.84 2.15 -83.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183712958.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.113 kcal (2) G-P(sol) polarization free energy of solvation -85.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds