Wall clock time and date at job start Fri Apr 10 2020 18:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21279 * 119.99970 * 2 1 4 4 N 1.34776 * 119.99818 * 179.97438 * 2 1 3 5 5 C 1.46502 * 119.99856 * 184.58953 * 4 2 1 6 6 H 1.09000 * 109.47109 * 179.82079 * 5 4 2 7 7 C 1.50701 * 109.47305 * 59.81928 * 5 4 2 8 8 O 1.21275 * 120.00002 * 325.49550 * 7 5 4 9 9 N 1.34775 * 119.99818 * 145.49327 * 7 5 4 10 10 C 1.47018 * 125.64898 * 354.37251 * 9 7 5 11 11 C 1.54329 * 107.27315 * 181.09628 * 10 9 7 12 12 C 1.55157 * 102.93816 * 22.19177 * 11 10 9 13 13 H 1.09005 * 111.03819 * 82.59351 * 12 11 10 14 14 N 1.46502 * 111.00680 * 206.42438 * 12 11 10 15 15 C 1.36940 * 120.00114 * 266.92705 * 14 12 11 16 16 H 1.08005 * 119.99844 * 359.97438 * 15 14 12 17 17 C 1.38806 * 120.00257 * 179.97438 * 15 14 12 18 18 N 1.31622 * 119.99911 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00382 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47280 * 59.99762 * 19 17 15 21 21 H 1.48501 * 109.47276 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46788 * 299.99852 * 19 17 15 23 23 C 1.47421 * 125.64706 * 174.41622 * 9 7 5 24 24 C 1.52999 * 109.46985 * 299.81855 * 5 4 2 25 25 C 1.54264 * 110.03422 * 210.05169 * 24 5 4 26 26 C 1.54897 * 104.19684 * 217.10744 * 25 24 5 27 27 C 1.54885 * 102.74538 * 37.94166 * 26 25 24 28 28 C 1.53878 * 110.02883 * 92.88705 * 24 5 4 29 29 H 1.09006 * 109.47244 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47491 * 299.99893 * 1 2 3 31 31 H 1.09000 * 109.47201 * 59.99556 * 1 2 3 32 32 H 0.97001 * 120.00273 * 4.58547 * 4 2 1 33 33 H 1.09000 * 109.88367 * 300.51007 * 10 9 7 34 34 H 1.08999 * 109.88382 * 61.68304 * 10 9 7 35 35 H 1.08996 * 110.71906 * 263.83572 * 11 10 9 36 36 H 1.09000 * 110.72306 * 140.55342 * 11 10 9 37 37 H 0.96998 * 119.99857 * 87.19331 * 14 12 11 38 38 H 0.97005 * 120.00374 * 179.97438 * 18 17 15 39 39 H 1.09000 * 110.36843 * 36.99612 * 23 9 7 40 40 H 1.09002 * 110.45911 * 274.72122 * 23 9 7 41 41 H 1.09003 * 110.01754 * 331.49827 * 24 5 4 42 42 H 1.09002 * 110.48375 * 335.78557 * 25 24 5 43 43 H 1.08993 * 110.48776 * 98.42847 * 25 24 5 44 44 H 1.08993 * 110.75298 * 279.62609 * 26 25 24 45 45 H 1.08993 * 110.75248 * 156.25647 * 26 25 24 46 46 H 1.09002 * 110.48426 * 203.37641 * 27 26 25 47 47 H 1.09004 * 110.49065 * 80.74173 * 27 26 25 48 48 H 1.09009 * 110.03196 * 238.56881 * 28 24 5 49 49 H 1.08992 * 110.03733 * 359.97438 * 28 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6423 -1.1692 0.1020 6 1 4.0060 -2.1967 0.0898 7 6 4.0574 -0.5048 1.3894 8 8 3.4129 0.4245 1.8274 9 7 5.1448 -0.9433 2.0539 10 6 5.9449 -2.1256 1.7024 11 6 7.0657 -2.2503 2.7559 12 6 6.4964 -1.4604 3.9640 13 1 5.8191 -2.0797 4.5523 14 7 7.5759 -0.9283 4.7993 15 6 8.0280 -1.6469 5.8737 16 1 7.5884 -2.6059 6.1055 17 6 9.0511 -1.1430 6.6649 18 7 9.5871 0.0254 6.3821 19 14 9.6674 -2.1230 8.1310 20 1 10.1857 -3.4349 7.6669 21 1 10.7553 -1.3713 8.8068 22 1 8.5505 -2.3414 9.0850 23 6 5.7285 -0.3174 3.2543 24 6 4.2368 -0.4037 -1.0818 25 6 5.6231 -0.9779 -1.4400 26 6 6.4571 0.2646 -1.8400 27 6 5.9696 1.3404 -0.8381 28 6 4.4571 1.0704 -0.6990 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6982 -2.0060 -0.0663 33 1 5.3175 -3.0168 1.7214 34 1 6.3803 -1.9973 0.7114 35 1 7.9866 -1.7922 2.3952 36 1 7.2312 -3.2944 3.0213 37 1 7.9677 -0.0651 4.5936 38 1 10.3019 0.3778 6.9352 39 1 4.9413 0.0696 3.9013 40 1 6.4138 0.4819 2.9722 41 1 3.5705 -0.4705 -1.9418 42 1 6.0660 -1.4725 -0.5755 43 1 5.5442 -1.6703 -2.2780 44 1 6.2376 0.5634 -2.8649 45 1 7.5223 0.0722 -1.7123 46 1 6.1436 2.3398 -1.2369 47 1 6.4686 1.2203 0.1235 48 1 3.8984 1.7189 -1.3740 49 1 4.1402 1.2405 0.3298 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184092690.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:23 Heat of formation + Delta-G solvation = -65.799751 kcal Electronic energy + Delta-G solvation = -29466.989399 eV Core-core repulsion = 25621.741608 eV Total energy + Delta-G solvation = -3845.247790 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.15692 -40.10484 -38.76516 -38.21857 -35.92805 -35.50797 -33.34487 -31.97776 -30.98397 -29.96307 -29.35468 -29.24935 -26.59022 -25.31556 -23.99350 -21.88990 -21.77208 -21.58920 -21.46844 -19.44018 -19.31315 -18.16608 -17.99574 -17.66656 -16.97493 -16.80478 -16.43047 -16.16132 -15.72911 -15.37735 -15.21700 -15.07047 -14.81612 -14.46816 -14.37778 -14.04966 -13.78361 -13.57626 -13.19786 -13.17522 -13.14640 -13.01474 -12.92231 -12.64021 -12.38500 -12.21955 -12.16616 -12.07507 -11.95782 -11.89218 -11.80469 -11.68084 -11.41761 -11.23152 -10.92773 -10.91301 -10.36014 -9.87043 -9.54786 -9.04776 -7.95003 -5.25539 1.48760 1.52013 1.53241 1.57934 1.74743 2.06179 2.46837 2.57938 3.33409 3.43550 3.61991 3.69658 3.72841 3.82466 3.94631 4.05975 4.09884 4.14678 4.21649 4.28986 4.32842 4.51260 4.52272 4.54712 4.63951 4.69857 4.71477 4.75906 4.80848 4.82313 4.90884 4.99265 5.06027 5.10242 5.16068 5.22343 5.25322 5.28576 5.42382 5.42927 5.50395 5.54095 5.55180 5.70543 6.25170 6.58013 6.71550 7.19293 7.31720 7.55020 8.03529 8.27511 9.28195 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.018454 B = 0.003216 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.940707 B = 8704.873374 C = 9331.843995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.493 3.507 3 O -0.550 6.550 4 N -0.715 5.715 5 C 0.144 3.856 6 H 0.143 0.857 7 C 0.517 3.483 8 O -0.559 6.559 9 N -0.610 5.610 10 C 0.094 3.906 11 C -0.143 4.143 12 C 0.167 3.833 13 H 0.064 0.936 14 N -0.729 5.729 15 C -0.242 4.242 16 H 0.082 0.918 17 C -0.074 4.074 18 N -0.971 5.971 19 Si 0.975 3.025 20 H -0.273 1.273 21 H -0.299 1.299 22 H -0.279 1.279 23 C 0.109 3.891 24 C -0.077 4.077 25 C -0.127 4.127 26 C -0.117 4.117 27 C -0.134 4.134 28 C -0.132 4.132 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.423 0.577 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.062 0.938 36 H 0.089 0.911 37 H 0.373 0.627 38 H 0.251 0.749 39 H 0.050 0.950 40 H 0.048 0.952 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.053 0.947 47 H 0.038 0.962 48 H 0.039 0.961 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.336 -9.831 -21.232 27.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.281 3.719 3 O -0.426 6.426 4 N -0.371 5.371 5 C 0.034 3.966 6 H 0.160 0.840 7 C 0.306 3.694 8 O -0.437 6.437 9 N -0.344 5.344 10 C -0.027 4.027 11 C -0.183 4.183 12 C 0.057 3.943 13 H 0.082 0.918 14 N -0.368 5.368 15 C -0.374 4.374 16 H 0.100 0.900 17 C -0.267 4.267 18 N -0.621 5.621 19 Si 0.804 3.196 20 H -0.198 1.198 21 H -0.226 1.226 22 H -0.206 1.206 23 C -0.016 4.016 24 C -0.097 4.097 25 C -0.164 4.164 26 C -0.154 4.154 27 C -0.172 4.172 28 C -0.169 4.169 29 H 0.125 0.875 30 H 0.102 0.898 31 H 0.119 0.881 32 H 0.261 0.739 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.204 0.796 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.107 0.893 42 H 0.099 0.901 43 H 0.118 0.882 44 H 0.093 0.907 45 H 0.090 0.910 46 H 0.072 0.928 47 H 0.057 0.943 48 H 0.058 0.942 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.339 -8.697 -20.890 27.337 hybrid contribution 0.592 0.473 1.274 1.482 sum -14.747 -8.225 -19.617 25.883 Atomic orbital electron populations 1.21823 0.89135 1.06038 1.05028 1.21515 0.91890 0.83727 0.74800 1.90806 1.70731 1.33037 1.48017 1.45851 1.05269 1.09821 1.76161 1.21174 0.82758 1.02049 0.90569 0.83964 1.21189 0.78901 0.83486 0.85869 1.90729 1.54048 1.30244 1.68715 1.48523 1.28293 1.29399 1.28207 1.22569 0.92924 0.87650 0.99582 1.23193 0.97564 1.02114 0.95443 1.21441 0.89167 0.92749 0.90936 0.91797 1.42424 1.40425 1.22349 1.31606 1.19605 1.13266 1.01051 1.03441 0.89975 1.25595 1.00151 0.98260 1.02666 1.69827 1.29585 1.20411 1.42266 0.85194 0.77346 0.77839 0.79257 1.19831 1.22583 1.20551 1.22178 0.96204 0.96394 0.86783 1.21928 0.97941 0.94284 0.95557 1.22814 0.92891 0.97846 1.02815 1.22449 0.99765 0.94598 0.98614 1.22454 0.96532 0.99390 0.98835 1.22674 0.94245 0.96095 1.03929 0.87504 0.89836 0.88147 0.73871 0.88194 0.88581 0.91962 0.89262 0.79553 0.94034 0.93167 0.93417 0.89250 0.90144 0.88194 0.90677 0.90991 0.92826 0.94298 0.94163 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 10.39 71.24 0.74 -1.42 16 2 C 0.49 11.28 6.81 87.66 0.60 11.88 16 3 O -0.55 -18.66 10.95 19.79 0.22 -18.44 16 4 N -0.71 -11.84 5.19 -446.10 -2.31 -14.15 16 5 C 0.14 2.81 2.75 44.24 0.12 2.93 16 6 H 0.14 1.62 6.62 -2.39 -0.02 1.61 16 7 C 0.52 15.57 5.50 87.66 0.48 16.05 16 8 O -0.56 -22.58 12.33 19.80 0.24 -22.34 16 9 N -0.61 -17.76 3.33 -811.81 -2.70 -20.47 16 10 C 0.09 2.00 5.83 86.73 0.51 2.51 16 11 C -0.14 -4.15 6.65 31.78 0.21 -3.94 16 12 C 0.17 6.36 3.71 46.38 0.17 6.53 16 13 H 0.06 2.45 8.09 -2.38 -0.02 2.43 16 14 N -0.73 -36.08 5.24 -316.36 -1.66 -37.74 16 15 C -0.24 -13.04 9.96 84.03 0.84 -12.20 16 16 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 17 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 18 N -0.97 -59.29 13.06 21.65 0.28 -59.00 16 19 Si 0.97 45.29 29.55 68.60 2.03 47.31 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 23 C 0.11 4.07 6.58 86.86 0.57 4.64 16 24 C -0.08 -1.57 2.53 -10.07 -0.03 -1.60 16 25 C -0.13 -1.96 6.21 31.67 0.20 -1.76 16 26 C -0.12 -2.24 6.91 31.89 0.22 -2.02 16 27 C -0.13 -3.65 6.83 31.67 0.22 -3.44 16 28 C -0.13 -3.93 4.01 31.32 0.13 -3.80 16 29 H 0.11 0.62 7.92 -2.38 -0.02 0.60 16 30 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.42 3.15 8.67 -92.71 -0.80 2.35 16 33 H 0.10 1.46 7.93 -2.39 -0.02 1.45 16 34 H 0.10 1.63 4.64 -2.39 -0.01 1.62 16 35 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.37 20.25 7.76 -92.71 -0.72 19.53 16 38 H 0.25 14.95 8.31 -92.70 -0.77 14.18 16 39 H 0.05 2.08 7.98 -2.39 -0.02 2.06 16 40 H 0.05 1.94 8.00 -2.39 -0.02 1.92 16 41 H 0.09 1.67 8.04 -2.39 -0.02 1.65 16 42 H 0.08 1.22 4.02 -2.39 -0.01 1.21 16 43 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 48 H 0.04 1.29 7.74 -2.38 -0.02 1.28 16 49 H 0.08 3.02 3.34 -2.39 -0.01 3.01 16 Total: -1.00 -79.92 371.33 0.99 -78.93 By element: Atomic # 1 Polarization: 35.83 SS G_CDS: -0.55 Total: 35.28 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: 5.44 Total: 10.62 kcal Atomic # 7 Polarization: -124.97 SS G_CDS: -6.39 Total: -131.36 kcal Atomic # 8 Polarization: -41.24 SS G_CDS: 0.46 Total: -40.78 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -79.92 0.99 -78.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184092690.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.129 kcal (2) G-P(sol) polarization free energy of solvation -79.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds