Wall clock time and date at job start Fri Apr 10 2020 18:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21279 * 120.00515 * 2 1 4 4 N 1.34779 * 119.99605 * 179.97438 * 2 1 3 5 5 C 1.46498 * 119.99614 * 184.86799 * 4 2 1 6 6 H 1.09000 * 109.47339 * 16.98979 * 5 4 2 7 7 C 1.50701 * 109.47027 * 136.99363 * 5 4 2 8 8 O 1.21284 * 120.00170 * 26.23075 * 7 5 4 9 9 N 1.34774 * 119.99882 * 206.23295 * 7 5 4 10 10 C 1.47021 * 125.65305 * 355.17694 * 9 7 5 11 11 C 1.54320 * 107.27692 * 181.02729 * 10 9 7 12 12 C 1.55158 * 102.94266 * 22.18743 * 11 10 9 13 13 H 1.09000 * 111.03404 * 82.58674 * 12 11 10 14 14 N 1.46491 * 111.00771 * 206.42749 * 12 11 10 15 15 C 1.36939 * 119.99841 * 267.47278 * 14 12 11 16 16 H 1.08000 * 120.00566 * 359.72673 * 15 14 12 17 17 C 1.38816 * 119.99915 * 179.72409 * 15 14 12 18 18 N 1.31621 * 120.00085 * 180.02562 * 17 15 14 19 19 Si 1.86806 * 120.00027 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46903 * 90.00286 * 19 17 15 21 21 H 1.48502 * 109.46925 * 210.00192 * 19 17 15 22 22 H 1.48505 * 109.46959 * 330.00139 * 19 17 15 23 23 C 1.47431 * 125.64886 * 175.13866 * 9 7 5 24 24 C 1.53002 * 109.47102 * 256.98997 * 5 4 2 25 25 C 1.54263 * 110.03242 * 63.25538 * 24 5 4 26 26 C 1.54892 * 104.19801 * 217.10436 * 25 24 5 27 27 C 1.54888 * 102.74580 * 37.94335 * 26 25 24 28 28 C 1.53876 * 110.03453 * 306.08804 * 24 5 4 29 29 H 1.08995 * 109.47289 * 270.00231 * 1 2 3 30 30 H 1.08996 * 109.46768 * 30.00099 * 1 2 3 31 31 H 1.08997 * 109.46862 * 149.99796 * 1 2 3 32 32 H 0.97001 * 120.00455 * 4.87190 * 4 2 1 33 33 H 1.09001 * 109.87738 * 300.44087 * 10 9 7 34 34 H 1.09001 * 109.88143 * 61.60202 * 10 9 7 35 35 H 1.09004 * 110.71513 * 263.83030 * 11 10 9 36 36 H 1.08993 * 110.72633 * 140.55479 * 11 10 9 37 37 H 0.97005 * 120.00070 * 87.19805 * 14 12 11 38 38 H 0.96999 * 120.00181 * 179.97438 * 18 17 15 39 39 H 1.08997 * 110.36783 * 37.05903 * 23 9 7 40 40 H 1.09001 * 110.45667 * 274.79333 * 23 9 7 41 41 H 1.09006 * 110.01911 * 184.70354 * 24 5 4 42 42 H 1.08994 * 110.48549 * 335.78654 * 25 24 5 43 43 H 1.09004 * 110.48211 * 98.42958 * 25 24 5 44 44 H 1.09000 * 110.75182 * 279.63161 * 26 25 24 45 45 H 1.09000 * 110.91428 * 156.33240 * 26 25 24 46 46 H 1.09005 * 110.48554 * 203.37969 * 27 26 25 47 47 H 1.08997 * 110.48774 * 80.73512 * 27 26 25 48 48 H 1.09000 * 110.03675 * 238.56982 * 28 24 5 49 49 H 1.09002 * 110.02927 * 359.95511 * 28 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1136 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6419 -1.1695 0.1082 6 1 3.9807 -0.2007 0.4754 7 6 4.0732 -2.2491 1.0671 8 8 3.3710 -3.2227 1.2400 9 7 5.2394 -2.1326 1.7327 10 6 6.2295 -1.0619 1.5459 11 6 7.4073 -1.3555 2.4988 12 6 7.2719 -2.8790 2.7596 13 1 7.7268 -3.4557 1.9543 14 7 7.8510 -3.2435 4.0548 15 6 9.1576 -3.6462 4.1317 16 1 9.7599 -3.6992 3.2368 17 6 9.7080 -3.9862 5.3599 18 7 10.9640 -4.3727 5.4338 19 14 8.6665 -3.8937 6.9079 20 1 7.9917 -5.1979 7.1291 21 1 9.5355 -3.5824 8.0712 22 1 7.6446 -2.8273 6.7540 23 6 5.7331 -3.0573 2.7694 24 6 4.2543 -1.4357 -1.2684 25 6 3.8877 -0.2946 -2.2395 26 6 3.6640 -1.0075 -3.5963 27 6 2.9647 -2.3250 -3.1789 28 6 3.6675 -2.7268 -1.8657 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 1.6985 -2.0058 -0.0704 33 1 6.5800 -1.0572 0.5138 34 1 5.7842 -0.0981 1.7927 35 1 7.3011 -0.7944 3.4273 36 1 8.3586 -1.1297 2.0171 37 1 7.3101 -3.1959 4.8587 38 1 11.3487 -4.6099 6.2921 39 1 5.4686 -4.0845 2.5186 40 1 5.3263 -2.7889 3.7443 41 1 5.3377 -1.5221 -1.1845 42 1 2.9741 0.2036 -1.9152 43 1 4.7071 0.4203 -2.3148 44 1 4.6159 -1.2137 -4.0858 45 1 3.0179 -0.4159 -4.2449 46 1 3.1106 -3.0919 -3.9397 47 1 1.9021 -2.1548 -3.0062 48 1 4.4661 -3.4392 -2.0724 49 1 2.9470 -3.1641 -1.1744 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184092697.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:25 Heat of formation + Delta-G solvation = -87.265856 kcal Electronic energy + Delta-G solvation = -28702.506375 eV Core-core repulsion = 24856.327745 eV Total energy + Delta-G solvation = -3846.178631 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.98090 -40.46893 -39.08306 -38.45515 -36.09024 -35.33796 -33.63940 -32.23006 -31.26660 -29.95981 -29.62114 -29.42744 -26.77950 -25.06919 -24.02205 -22.04400 -21.82363 -21.51932 -20.86535 -20.16231 -19.77492 -18.56754 -17.81417 -17.55834 -17.38467 -16.98043 -16.37137 -16.15417 -15.83888 -15.66581 -15.40612 -15.13819 -14.76143 -14.48593 -14.37407 -14.18374 -14.08583 -13.77361 -13.52919 -13.46165 -13.28103 -13.21669 -12.99486 -12.73061 -12.47635 -12.31924 -12.17332 -12.06195 -11.95813 -11.87761 -11.83786 -11.67968 -11.54155 -11.42210 -11.05791 -11.00758 -11.00068 -10.15581 -9.76220 -9.37057 -8.03922 -5.39203 1.32503 1.38400 1.41035 1.47570 1.54295 1.73865 2.34327 2.47122 3.19089 3.29666 3.46431 3.59377 3.63968 3.73307 3.83367 3.88491 3.95422 4.16726 4.19031 4.25955 4.30123 4.39382 4.51007 4.52332 4.57174 4.64133 4.65199 4.66032 4.77586 4.79226 4.83010 4.90982 4.96681 5.05278 5.08191 5.11160 5.20079 5.23718 5.30120 5.33077 5.34267 5.40197 5.49042 5.74868 6.19204 6.37928 6.48085 6.91605 7.03945 7.17763 7.77769 7.96342 9.16971 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.019913 B = 0.002925 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.764452 B = 9569.073014 C =10124.276693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.511 3.489 3 O -0.584 6.584 4 N -0.703 5.703 5 C 0.142 3.858 6 H 0.111 0.889 7 C 0.524 3.476 8 O -0.567 6.567 9 N -0.609 5.609 10 C 0.103 3.897 11 C -0.146 4.146 12 C 0.169 3.831 13 H 0.066 0.934 14 N -0.742 5.742 15 C -0.231 4.231 16 H 0.063 0.937 17 C -0.059 4.059 18 N -0.981 5.981 19 Si 0.950 3.050 20 H -0.281 1.281 21 H -0.297 1.297 22 H -0.251 1.251 23 C 0.104 3.896 24 C -0.094 4.094 25 C -0.114 4.114 26 C -0.121 4.121 27 C -0.116 4.116 28 C -0.123 4.123 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.415 0.585 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.367 0.633 38 H 0.258 0.742 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.069 0.931 48 H 0.058 0.942 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.674 9.550 -17.672 30.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.300 3.700 3 O -0.464 6.464 4 N -0.357 5.357 5 C 0.033 3.967 6 H 0.129 0.871 7 C 0.312 3.688 8 O -0.446 6.446 9 N -0.342 5.342 10 C -0.020 4.020 11 C -0.186 4.186 12 C 0.060 3.940 13 H 0.084 0.916 14 N -0.384 5.384 15 C -0.361 4.361 16 H 0.081 0.919 17 C -0.251 4.251 18 N -0.631 5.631 19 Si 0.778 3.222 20 H -0.207 1.207 21 H -0.223 1.223 22 H -0.175 1.175 23 C -0.020 4.020 24 C -0.114 4.114 25 C -0.152 4.152 26 C -0.158 4.158 27 C -0.153 4.153 28 C -0.160 4.160 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.123 0.877 32 H 0.253 0.747 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.200 0.800 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.077 0.923 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -22.488 9.706 -17.664 30.198 hybrid contribution 0.084 -0.695 1.484 1.641 sum -22.403 9.011 -16.180 29.067 Atomic orbital electron populations 1.21916 0.88113 1.06428 1.06080 1.21544 0.92200 0.82462 0.73747 1.90710 1.71690 1.32522 1.51480 1.45843 1.05561 1.10097 1.74199 1.20718 0.83131 0.97949 0.94928 0.87120 1.20789 0.79680 0.87711 0.80581 1.90664 1.54053 1.33225 1.66640 1.48423 1.19335 1.27821 1.38661 1.22268 0.88367 0.90251 1.01080 1.23218 0.97871 0.98013 0.99521 1.21404 0.90308 0.94367 0.87963 0.91551 1.42551 1.10104 1.81064 1.04701 1.18991 0.87275 1.35546 0.94321 0.91902 1.25451 0.97125 1.01715 1.00800 1.69866 1.14486 1.53354 1.25397 0.85484 0.78504 0.78627 0.79595 1.20685 1.22336 1.17544 1.22338 0.94444 0.94059 0.91115 1.22114 1.00355 0.96921 0.91963 1.22396 1.01959 0.96321 0.94505 1.22480 1.00885 0.96129 0.96311 1.22308 0.99594 0.97371 0.96064 1.22196 1.00085 0.96099 0.97663 0.87657 0.88185 0.87677 0.74728 0.89087 0.89734 0.91053 0.89819 0.79955 0.93277 0.91181 0.91504 0.89516 0.91551 0.91389 0.91154 0.90877 0.91059 0.91191 0.92270 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 10.31 71.24 0.73 -0.81 16 2 C 0.51 9.23 6.82 87.66 0.60 9.83 16 3 O -0.58 -15.06 15.35 -3.03 -0.05 -15.11 16 4 N -0.70 -12.45 4.08 -446.09 -1.82 -14.27 16 5 C 0.14 2.92 1.77 44.25 0.08 3.00 16 6 H 0.11 2.46 6.28 -2.39 -0.01 2.45 16 7 C 0.52 13.69 6.56 87.66 0.58 14.27 16 8 O -0.57 -17.71 15.59 -3.04 -0.05 -17.76 16 9 N -0.61 -16.15 3.33 -811.79 -2.70 -18.85 16 10 C 0.10 2.29 6.26 86.73 0.54 2.83 16 11 C -0.15 -4.16 6.65 31.78 0.21 -3.95 16 12 C 0.17 5.94 3.71 46.38 0.17 6.11 16 13 H 0.07 2.46 8.09 -2.39 -0.02 2.44 16 14 N -0.74 -32.74 5.05 -316.39 -1.60 -34.34 16 15 C -0.23 -12.57 10.44 84.03 0.88 -11.69 16 16 H 0.06 3.74 8.06 -2.91 -0.02 3.71 16 17 C -0.06 -3.39 5.50 84.86 0.47 -2.92 16 18 N -0.98 -61.63 13.97 21.65 0.30 -61.33 16 19 Si 0.95 44.45 27.74 68.60 1.90 46.35 16 20 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 21 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 22 H -0.25 -10.52 6.52 99.48 0.65 -9.87 16 23 C 0.10 3.26 6.58 86.85 0.57 3.83 16 24 C -0.09 -1.66 2.77 -10.07 -0.03 -1.69 16 25 C -0.11 -1.87 6.27 31.67 0.20 -1.68 16 26 C -0.12 -1.61 6.91 31.89 0.22 -1.39 16 27 C -0.12 -1.55 6.83 31.67 0.22 -1.33 16 28 C -0.12 -2.12 5.78 31.32 0.18 -1.94 16 29 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.41 6.49 7.17 -92.71 -0.66 5.83 16 33 H 0.09 1.66 7.22 -2.39 -0.02 1.65 16 34 H 0.08 1.64 7.78 -2.39 -0.02 1.62 16 35 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 36 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.37 15.69 5.62 -92.70 -0.52 15.17 16 38 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 39 H 0.07 2.33 7.99 -2.39 -0.02 2.31 16 40 H 0.07 2.09 8.00 -2.39 -0.02 2.07 16 41 H 0.09 1.52 7.22 -2.38 -0.02 1.50 16 42 H 0.07 1.27 5.04 -2.39 -0.01 1.26 16 43 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 47 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.06 1.23 5.52 -2.39 -0.01 1.22 16 Total: -1.00 -71.68 380.84 1.33 -70.35 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: -0.28 Total: 32.50 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 5.62 Total: 12.47 kcal Atomic # 7 Polarization: -122.98 SS G_CDS: -5.82 Total: -128.79 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -0.09 Total: -32.87 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.90 Total: 46.35 kcal Total: -71.68 1.33 -70.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184092697.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.918 kcal (2) G-P(sol) polarization free energy of solvation -71.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds