Wall clock time and date at job start Fri Apr 10 2020 18:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 119.99749 * 2 1 4 4 C 1.50697 * 120.00106 * 179.97438 * 2 1 3 5 5 C 1.53000 * 109.46829 * 95.00348 * 4 2 1 6 6 H 1.09006 * 109.47299 * 54.99910 * 5 4 2 7 7 C 1.52997 * 109.47247 * 294.99786 * 5 4 2 8 8 C 1.50700 * 109.47003 * 174.99775 * 5 4 2 9 9 O 1.21284 * 119.99802 * 359.97438 * 8 5 4 10 10 N 1.34776 * 120.00311 * 179.97438 * 8 5 4 11 11 C 1.47422 * 125.64498 * 359.97438 * 10 8 5 12 12 C 1.54912 * 104.83500 * 155.91583 * 11 10 8 13 13 C 1.55162 * 101.57717 * 37.00946 * 12 11 10 14 14 H 1.09002 * 110.72059 * 82.86237 * 13 12 11 15 15 N 1.46904 * 110.71777 * 205.95855 * 13 12 11 16 16 C 1.46900 * 110.99872 * 271.15451 * 15 13 12 17 17 C 1.50700 * 109.47094 * 179.97438 * 16 15 13 18 18 O 1.21301 * 119.99887 * 0.02562 * 17 16 15 19 19 N 1.34775 * 120.00226 * 179.97438 * 17 16 15 20 20 C 1.37095 * 120.00195 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99958 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00102 * 180.02562 * 20 19 17 23 23 N 1.31416 * 119.99936 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00182 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46895 * 90.00422 * 24 22 20 26 26 H 1.48493 * 109.47345 * 210.00098 * 24 22 20 27 27 H 1.48505 * 109.46971 * 330.00730 * 24 22 20 28 28 C 1.47018 * 125.65427 * 180.02562 * 10 8 5 29 29 H 1.07996 * 120.00350 * 0.02562 * 1 2 3 30 30 H 1.08002 * 119.99504 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47347 * 240.00303 * 3 2 1 32 32 H 1.09006 * 109.47144 * 359.97438 * 3 2 1 33 33 H 1.08994 * 109.47230 * 119.99515 * 3 2 1 34 34 H 1.08994 * 109.47353 * 335.00331 * 4 2 1 35 35 H 1.09000 * 109.47089 * 214.99798 * 4 2 1 36 36 H 1.09002 * 109.47442 * 60.00058 * 7 5 4 37 37 H 1.08999 * 109.47571 * 180.02562 * 7 5 4 38 38 H 1.09006 * 109.47072 * 300.00263 * 7 5 4 39 39 H 1.09003 * 110.37241 * 37.07952 * 11 10 8 40 40 H 1.08998 * 110.46196 * 274.80100 * 11 10 8 41 41 H 1.08999 * 111.00244 * 278.93675 * 12 11 10 42 42 H 1.08996 * 111.00556 * 155.07846 * 12 11 10 43 43 H 1.00897 * 110.99650 * 147.20225 * 15 13 12 44 44 H 1.08993 * 109.47330 * 300.00361 * 16 15 13 45 45 H 1.09000 * 109.46965 * 60.00477 * 16 15 13 46 46 H 0.96998 * 119.99895 * 0.02562 * 19 17 16 47 47 H 0.96997 * 119.99658 * 180.02562 * 23 22 20 48 48 H 1.09001 * 109.88087 * 61.59317 * 28 10 8 49 49 H 1.09003 * 109.87911 * 300.43469 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0636 -1.3051 0.0006 5 6 2.4275 -1.6844 -1.4363 6 1 2.9771 -0.8653 -1.9002 7 6 1.1489 -1.9556 -2.2316 8 6 3.2855 -2.9233 -1.4268 9 8 3.5775 -3.4506 -0.3743 10 7 3.7283 -3.4453 -2.5877 11 6 3.4498 -2.9091 -3.9324 12 6 4.6141 -3.4253 -4.8143 13 6 4.8433 -4.8437 -4.2284 14 1 4.1396 -5.5567 -4.6580 15 7 6.2272 -5.2818 -4.4540 16 6 6.3577 -5.9696 -5.7454 17 6 7.7877 -6.4028 -5.9416 18 8 8.6166 -6.1625 -5.0892 19 7 8.1455 -7.0580 -7.0637 20 6 9.4465 -7.4516 -7.2424 21 1 10.1847 -7.2369 -6.4838 22 6 9.8155 -8.1266 -8.3995 23 7 8.9174 -8.3873 -9.3228 24 14 11.5881 -8.6635 -8.6427 25 1 11.7730 -10.0275 -8.0853 26 1 11.9077 -8.6739 -10.0928 27 1 12.4927 -7.7161 -7.9431 28 6 4.5681 -4.6444 -2.7230 29 1 -0.5400 0.9352 -0.0004 30 1 -0.5399 -0.9354 -0.0004 31 1 2.6901 1.3630 -0.8900 32 1 1.3551 2.1337 -0.0005 33 1 2.6901 1.3630 0.8900 34 1 1.4387 -2.0852 0.4352 35 1 2.9743 -1.1985 0.5900 36 1 0.5283 -1.0596 -2.2385 37 1 1.4081 -2.2263 -3.2551 38 1 0.5993 -2.7747 -1.7676 39 1 3.4434 -1.8193 -3.9125 40 1 2.4969 -3.2865 -4.3033 41 1 5.5015 -2.8042 -4.6925 42 1 4.3170 -3.4786 -5.8616 43 1 6.5487 -5.8677 -3.6981 44 1 5.7076 -6.8444 -5.7585 45 1 6.0704 -5.2914 -6.5489 46 1 7.4826 -7.2504 -7.7452 47 1 9.1749 -8.8588 -10.1304 48 1 4.0425 -5.5120 -2.3242 49 1 5.5081 -4.5006 -2.1902 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185050143.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:31 Heat of formation + Delta-G solvation = -59.490255 kcal Electronic energy + Delta-G solvation = -26883.143546 eV Core-core repulsion = 23038.169356 eV Total energy + Delta-G solvation = -3844.974190 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.55760 -38.61201 -37.87479 -36.90033 -34.84409 -33.84971 -33.10359 -31.26331 -30.60428 -29.09785 -27.64754 -27.37057 -26.20434 -24.55546 -23.73304 -22.43056 -20.64331 -19.47680 -19.22452 -18.77190 -17.92064 -17.19282 -16.57403 -16.10333 -15.95185 -15.38973 -15.26559 -14.80908 -14.64685 -14.39760 -14.11640 -13.92032 -13.69903 -13.67422 -13.57166 -13.22453 -13.06969 -12.68550 -12.56513 -12.34217 -12.26526 -12.02048 -11.85341 -11.70735 -11.53481 -11.39917 -11.34309 -11.24015 -11.18643 -11.08083 -10.91363 -10.40578 -10.23632 -9.91190 -9.53013 -9.37124 -8.85007 -8.50771 -8.17033 -7.98529 -6.43803 -3.84642 1.83973 2.45334 2.74045 3.16748 3.25678 3.31738 3.87853 4.03560 4.06396 4.26723 4.40979 4.45564 4.48213 4.54396 4.70956 4.78396 4.92187 4.99263 5.04912 5.09153 5.14978 5.19701 5.26581 5.28897 5.34046 5.38614 5.43977 5.47622 5.59033 5.60105 5.61446 5.66690 5.75060 5.77122 5.82317 5.84217 5.91850 6.02827 6.11830 6.24923 6.28191 6.52638 7.13117 7.29679 7.53505 7.54557 7.97230 8.04040 8.58766 9.15856 9.51699 10.03013 10.73848 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.039139 B = 0.001794 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.221759 B =15602.779690 C =15770.476800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.121 4.121 3 C -0.121 4.121 4 C -0.068 4.068 5 C -0.099 4.099 6 H 0.097 0.903 7 C -0.153 4.153 8 C 0.532 3.468 9 O -0.540 6.540 10 N -0.613 5.613 11 C 0.098 3.902 12 C -0.125 4.125 13 C 0.074 3.926 14 H 0.060 0.940 15 N -0.657 5.657 16 C 0.052 3.948 17 C 0.440 3.560 18 O -0.583 6.583 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 C 0.107 3.893 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.353 0.647 44 H 0.045 0.955 45 H 0.087 0.913 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.068 0.932 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.012 15.389 10.685 27.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.122 4.122 3 C -0.178 4.178 4 C -0.105 4.105 5 C -0.120 4.120 6 H 0.115 0.885 7 C -0.211 4.211 8 C 0.320 3.680 9 O -0.417 6.417 10 N -0.348 5.348 11 C -0.025 4.025 12 C -0.164 4.164 13 C -0.037 4.037 14 H 0.078 0.922 15 N -0.290 5.290 16 C -0.081 4.081 17 C 0.225 3.775 18 O -0.467 6.467 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.016 4.016 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.174 0.826 44 H 0.063 0.937 45 H 0.105 0.895 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.086 0.914 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -19.076 15.790 11.471 27.291 hybrid contribution -0.007 -1.322 -0.631 1.465 sum -19.084 14.468 10.840 26.287 Atomic orbital electron populations 1.23747 0.95156 1.01809 1.02575 1.21736 0.95422 0.95575 0.99420 1.20897 1.00296 0.94248 1.02353 1.20476 1.00969 0.94358 0.94738 1.21166 0.96820 0.95659 0.98340 0.88472 1.21995 0.96094 1.02852 1.00129 1.20351 0.79966 0.85518 0.82125 1.90715 1.58376 1.62361 1.30276 1.48377 1.51526 1.28718 1.06164 1.22507 0.98716 0.99306 0.81972 1.22911 0.98230 0.96352 0.98877 1.22551 0.90669 0.96821 0.93643 0.92192 1.60157 1.17731 1.46640 1.04507 1.21718 0.96564 0.97183 0.92638 1.19779 0.89319 0.84032 0.84357 1.90537 1.52359 1.59741 1.44031 1.41854 1.10817 1.49884 1.17398 1.19710 0.85909 1.33206 1.04112 0.87897 1.25263 0.99942 0.97307 0.95404 1.69612 1.34180 1.41446 1.09057 0.85851 0.81998 0.79065 0.77343 1.20416 1.20914 1.19394 1.22040 0.95688 0.87567 0.96350 0.88535 0.88471 0.91535 0.92025 0.91471 0.90613 0.90306 0.90953 0.91463 0.92223 0.90330 0.91007 0.89148 0.89843 0.82639 0.93668 0.89492 0.77462 0.91867 0.91409 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.23 12.51 29.01 0.36 -0.87 16 2 C -0.12 -0.84 4.79 -101.07 -0.48 -1.33 16 3 C -0.12 -0.71 10.12 36.01 0.36 -0.35 16 4 C -0.07 -0.58 4.22 -27.88 -0.12 -0.70 16 5 C -0.10 -0.81 2.06 -91.77 -0.19 -1.00 16 6 H 0.10 0.69 7.85 -51.93 -0.41 0.29 16 7 C -0.15 -1.00 8.63 37.16 0.32 -0.68 16 8 C 0.53 6.28 7.21 -10.99 -0.08 6.20 16 9 O -0.54 -8.50 16.25 5.55 0.09 -8.41 16 10 N -0.61 -6.60 3.32 -170.52 -0.57 -7.17 16 11 C 0.10 0.77 5.13 -2.53 -0.01 0.76 16 12 C -0.13 -1.21 6.75 -24.58 -0.17 -1.37 16 13 C 0.07 0.85 3.25 -65.88 -0.21 0.64 16 14 H 0.06 0.63 7.86 -51.93 -0.41 0.23 16 15 N -0.66 -10.06 5.95 -106.05 -0.63 -10.69 16 16 C 0.05 0.86 6.04 -4.98 -0.03 0.83 16 17 C 0.44 10.17 7.82 -10.99 -0.09 10.09 16 18 O -0.58 -15.69 15.78 5.54 0.09 -15.60 16 19 N -0.56 -14.05 5.29 -10.96 -0.06 -14.10 16 20 C -0.30 -8.31 9.68 -14.94 -0.14 -8.45 16 21 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.26 13.05 55.50 0.72 -23.54 16 24 Si 0.93 20.94 29.55 -169.99 -5.02 15.91 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 C 0.11 1.27 6.39 -3.07 -0.02 1.25 16 29 H 0.10 0.51 7.83 -52.49 -0.41 0.10 16 30 H 0.10 0.59 7.99 -52.49 -0.42 0.17 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.31 7.78 -51.93 -0.40 -0.10 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.71 7.99 -51.93 -0.41 0.29 16 35 H 0.08 0.77 7.95 -51.93 -0.41 0.36 16 36 H 0.07 0.41 6.52 -51.93 -0.34 0.07 16 37 H 0.07 0.38 4.99 -51.93 -0.26 0.12 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.50 7.36 -51.93 -0.38 0.11 16 40 H 0.07 0.46 7.07 -51.93 -0.37 0.09 16 41 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.35 5.71 8.10 -39.29 -0.32 5.39 16 44 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 45 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 46 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 47 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 48 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.08 1.10 7.95 -51.93 -0.41 0.69 16 LS Contribution 396.30 15.07 5.97 5.97 Total: -1.00 -32.92 396.30 -8.16 -41.09 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -8.17 Total: 11.02 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -0.59 Total: 5.52 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -0.53 Total: -55.50 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: 0.18 Total: -24.00 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.92 -8.16 -41.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185050143.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.405 kcal (2) G-P(sol) polarization free energy of solvation -32.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds