Wall clock time and date at job start Fri Apr 10 2020 18:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 119.99749 * 2 1 4 4 C 1.50697 * 120.00106 * 179.97438 * 2 1 3 5 5 C 1.53000 * 109.46829 * 95.00348 * 4 2 1 6 6 H 1.09006 * 109.47299 * 54.99910 * 5 4 2 7 7 C 1.52997 * 109.47247 * 294.99786 * 5 4 2 8 8 C 1.50700 * 109.47003 * 174.99775 * 5 4 2 9 9 O 1.21284 * 119.99802 * 359.97438 * 8 5 4 10 10 N 1.34776 * 120.00311 * 179.97438 * 8 5 4 11 11 C 1.47422 * 125.64498 * 359.97438 * 10 8 5 12 12 C 1.54912 * 104.83500 * 155.91583 * 11 10 8 13 13 C 1.55162 * 101.57717 * 37.00946 * 12 11 10 14 14 H 1.09002 * 110.72059 * 82.86237 * 13 12 11 15 15 N 1.46904 * 110.71777 * 205.95855 * 13 12 11 16 16 C 1.46900 * 110.99872 * 271.15451 * 15 13 12 17 17 C 1.50700 * 109.47094 * 179.97438 * 16 15 13 18 18 O 1.21301 * 119.99887 * 0.02562 * 17 16 15 19 19 N 1.34775 * 120.00226 * 179.97438 * 17 16 15 20 20 C 1.37095 * 120.00195 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99958 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00102 * 180.02562 * 20 19 17 23 23 N 1.31416 * 119.99936 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00182 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46895 * 90.00422 * 24 22 20 26 26 H 1.48493 * 109.47345 * 210.00098 * 24 22 20 27 27 H 1.48505 * 109.46971 * 330.00730 * 24 22 20 28 28 C 1.47018 * 125.65427 * 180.02562 * 10 8 5 29 29 H 1.07996 * 120.00350 * 0.02562 * 1 2 3 30 30 H 1.08002 * 119.99504 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47347 * 240.00303 * 3 2 1 32 32 H 1.09006 * 109.47144 * 359.97438 * 3 2 1 33 33 H 1.08994 * 109.47230 * 119.99515 * 3 2 1 34 34 H 1.08994 * 109.47353 * 335.00331 * 4 2 1 35 35 H 1.09000 * 109.47089 * 214.99798 * 4 2 1 36 36 H 1.09002 * 109.47442 * 60.00058 * 7 5 4 37 37 H 1.08999 * 109.47571 * 180.02562 * 7 5 4 38 38 H 1.09006 * 109.47072 * 300.00263 * 7 5 4 39 39 H 1.09003 * 110.37241 * 37.07952 * 11 10 8 40 40 H 1.08998 * 110.46196 * 274.80100 * 11 10 8 41 41 H 1.08999 * 111.00244 * 278.93675 * 12 11 10 42 42 H 1.08996 * 111.00556 * 155.07846 * 12 11 10 43 43 H 1.00897 * 110.99650 * 147.20225 * 15 13 12 44 44 H 1.08993 * 109.47330 * 300.00361 * 16 15 13 45 45 H 1.09000 * 109.46965 * 60.00477 * 16 15 13 46 46 H 0.96998 * 119.99895 * 0.02562 * 19 17 16 47 47 H 0.96997 * 119.99658 * 180.02562 * 23 22 20 48 48 H 1.09001 * 109.88087 * 61.59317 * 28 10 8 49 49 H 1.09003 * 109.87911 * 300.43469 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0636 -1.3051 0.0006 5 6 2.4275 -1.6844 -1.4363 6 1 2.9771 -0.8653 -1.9002 7 6 1.1489 -1.9556 -2.2316 8 6 3.2855 -2.9233 -1.4268 9 8 3.5775 -3.4506 -0.3743 10 7 3.7283 -3.4453 -2.5877 11 6 3.4498 -2.9091 -3.9324 12 6 4.6141 -3.4253 -4.8143 13 6 4.8433 -4.8437 -4.2284 14 1 4.1396 -5.5567 -4.6580 15 7 6.2272 -5.2818 -4.4540 16 6 6.3577 -5.9696 -5.7454 17 6 7.7877 -6.4028 -5.9416 18 8 8.6166 -6.1625 -5.0892 19 7 8.1455 -7.0580 -7.0637 20 6 9.4465 -7.4516 -7.2424 21 1 10.1847 -7.2369 -6.4838 22 6 9.8155 -8.1266 -8.3995 23 7 8.9174 -8.3873 -9.3228 24 14 11.5881 -8.6635 -8.6427 25 1 11.7730 -10.0275 -8.0853 26 1 11.9077 -8.6739 -10.0928 27 1 12.4927 -7.7161 -7.9431 28 6 4.5681 -4.6444 -2.7230 29 1 -0.5400 0.9352 -0.0004 30 1 -0.5399 -0.9354 -0.0004 31 1 2.6901 1.3630 -0.8900 32 1 1.3551 2.1337 -0.0005 33 1 2.6901 1.3630 0.8900 34 1 1.4387 -2.0852 0.4352 35 1 2.9743 -1.1985 0.5900 36 1 0.5283 -1.0596 -2.2385 37 1 1.4081 -2.2263 -3.2551 38 1 0.5993 -2.7747 -1.7676 39 1 3.4434 -1.8193 -3.9125 40 1 2.4969 -3.2865 -4.3033 41 1 5.5015 -2.8042 -4.6925 42 1 4.3170 -3.4786 -5.8616 43 1 6.5487 -5.8677 -3.6981 44 1 5.7076 -6.8444 -5.7585 45 1 6.0704 -5.2914 -6.5489 46 1 7.4826 -7.2504 -7.7452 47 1 9.1749 -8.8588 -10.1304 48 1 4.0425 -5.5120 -2.3242 49 1 5.5081 -4.5006 -2.1902 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185050143.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:30 Heat of formation + Delta-G solvation = -82.692420 kcal Electronic energy + Delta-G solvation = -26884.149667 eV Core-core repulsion = 23038.169356 eV Total energy + Delta-G solvation = -3845.980311 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.43256 -40.18779 -39.02502 -37.62298 -36.23070 -35.60362 -33.79856 -33.25718 -31.54082 -30.08275 -28.14725 -28.04751 -27.64333 -25.87249 -24.94089 -23.15175 -21.57213 -21.10965 -20.20628 -19.90116 -19.34423 -18.08723 -17.66414 -17.45889 -16.87389 -16.78052 -16.36760 -16.11704 -15.80805 -15.44240 -15.21066 -15.18104 -14.81014 -14.46721 -14.38580 -14.24687 -13.89939 -13.78831 -13.50572 -13.47791 -13.31161 -13.18952 -12.92796 -12.83255 -12.58738 -12.47839 -12.41609 -12.16292 -12.12352 -12.03755 -11.96281 -11.84147 -11.75000 -11.50931 -10.82775 -10.35218 -10.01395 -9.88161 -9.73982 -9.39489 -8.46855 -5.95339 1.31985 1.37919 1.42142 1.54516 1.55757 1.90255 2.05608 2.29579 2.91281 3.20608 3.28105 3.50551 3.63570 3.69020 3.86744 3.92740 4.11935 4.15328 4.23677 4.26623 4.31769 4.34228 4.42111 4.51270 4.59080 4.64669 4.66786 4.73680 4.79387 4.83969 4.86432 4.90336 4.95782 5.00773 5.08821 5.15065 5.19347 5.25041 5.30061 5.30240 5.41273 5.77789 5.88439 6.01838 6.09523 6.28287 6.46768 6.60389 7.07520 7.12961 7.56522 8.12286 8.70342 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.039139 B = 0.001794 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.221759 B =15602.779690 C =15770.476800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.130 4.130 3 C -0.121 4.121 4 C -0.065 4.065 5 C -0.090 4.090 6 H 0.114 0.886 7 C -0.147 4.147 8 C 0.524 3.476 9 O -0.591 6.591 10 N -0.613 5.613 11 C 0.099 3.901 12 C -0.122 4.122 13 C 0.079 3.921 14 H 0.081 0.919 15 N -0.673 5.673 16 C 0.068 3.932 17 C 0.436 3.564 18 O -0.626 6.626 19 N -0.572 5.572 20 C -0.335 4.335 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.918 5.918 24 Si 0.991 3.009 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.275 1.275 28 C 0.107 3.893 29 H 0.111 0.889 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.050 0.950 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.070 0.930 42 H 0.105 0.895 43 H 0.344 0.656 44 H 0.071 0.929 45 H 0.111 0.889 46 H 0.398 0.602 47 H 0.278 0.722 48 H 0.065 0.935 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.024 16.534 9.033 28.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.130 4.130 3 C -0.178 4.178 4 C -0.103 4.103 5 C -0.111 4.111 6 H 0.132 0.868 7 C -0.204 4.204 8 C 0.314 3.686 9 O -0.471 6.471 10 N -0.346 5.346 11 C -0.023 4.023 12 C -0.160 4.160 13 C -0.032 4.032 14 H 0.099 0.901 15 N -0.306 5.306 16 C -0.064 4.064 17 C 0.223 3.777 18 O -0.513 6.513 19 N -0.209 5.209 20 C -0.465 4.465 21 H 0.095 0.905 22 C -0.211 4.211 23 N -0.559 5.559 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.194 1.194 27 H -0.200 1.200 28 C -0.016 4.016 29 H 0.129 0.871 30 H 0.116 0.884 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.089 0.911 42 H 0.124 0.876 43 H 0.163 0.837 44 H 0.089 0.911 45 H 0.129 0.871 46 H 0.232 0.768 47 H 0.087 0.913 48 H 0.084 0.916 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.132 16.952 9.771 28.799 hybrid contribution 0.594 -1.673 -0.059 1.777 sum -20.538 15.279 9.712 27.378 Atomic orbital electron populations 1.23885 0.94888 1.02530 1.01220 1.21683 0.95654 0.95062 1.00638 1.20915 1.00510 0.93982 1.02386 1.20396 1.00027 0.95090 0.94775 1.21186 0.97244 0.94104 0.98595 0.86782 1.21980 0.94943 1.03219 1.00302 1.21084 0.79763 0.86136 0.81575 1.90687 1.60338 1.63986 1.32136 1.48495 1.50701 1.28175 1.07277 1.22749 0.99044 1.00736 0.79722 1.22917 0.98227 0.94489 1.00413 1.22616 0.88823 0.98366 0.93345 0.90101 1.60174 1.20542 1.46298 1.03603 1.21574 0.91970 0.98765 0.94070 1.20931 0.91716 0.82167 0.82838 1.90508 1.54580 1.60950 1.45251 1.41909 1.10143 1.50558 1.18285 1.19651 0.86996 1.35327 1.04510 0.90504 1.26002 1.03762 0.96677 0.94664 1.69662 1.35624 1.41332 1.09274 0.84950 0.77222 0.78533 0.77763 1.19711 1.19427 1.19966 1.21915 0.94802 0.88282 0.96634 0.87113 0.88441 0.91064 0.90833 0.91963 0.92023 0.92344 0.89577 0.90023 0.93083 0.88079 0.88310 0.91122 0.87620 0.83698 0.91147 0.87079 0.76835 0.91275 0.91633 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.99 12.51 67.78 0.85 -1.15 16 2 C -0.13 -1.64 4.79 -16.49 -0.08 -1.72 16 3 C -0.12 -1.24 10.12 71.24 0.72 -0.51 16 4 C -0.06 -1.11 4.22 29.85 0.13 -0.98 16 5 C -0.09 -1.37 2.06 -11.54 -0.02 -1.39 16 6 H 0.11 1.36 7.85 -2.38 -0.02 1.34 16 7 C -0.15 -1.52 8.63 71.98 0.62 -0.90 16 8 C 0.52 12.28 7.21 87.66 0.63 12.91 16 9 O -0.59 -19.46 16.25 -3.04 -0.05 -19.51 16 10 N -0.61 -12.51 3.32 -811.81 -2.70 -15.20 16 11 C 0.10 1.24 5.13 86.86 0.45 1.68 16 12 C -0.12 -2.02 6.75 31.99 0.22 -1.80 16 13 C 0.08 1.66 3.25 46.10 0.15 1.81 16 14 H 0.08 1.43 7.86 -2.39 -0.02 1.42 16 15 N -0.67 -20.19 5.95 -489.45 -2.91 -23.11 16 16 C 0.07 2.18 6.04 85.56 0.52 2.69 16 17 C 0.44 20.32 7.82 87.66 0.69 21.00 16 18 O -0.63 -34.73 15.78 -3.09 -0.05 -34.78 16 19 N -0.57 -28.81 5.29 -306.98 -1.62 -30.43 16 20 C -0.34 -18.95 9.68 84.04 0.81 -18.14 16 21 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 22 C -0.01 -0.59 5.50 84.92 0.47 -0.12 16 23 N -0.92 -48.79 13.05 21.66 0.28 -48.51 16 24 Si 0.99 42.75 29.55 68.60 2.03 44.77 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 26 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 27 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 28 C 0.11 2.55 6.39 86.73 0.55 3.10 16 29 H 0.11 0.87 7.83 -2.91 -0.02 0.85 16 30 H 0.10 1.02 7.99 -2.91 -0.02 1.00 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.63 16 32 H 0.07 0.57 7.78 -2.38 -0.02 0.55 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 34 H 0.06 1.19 7.99 -2.39 -0.02 1.17 16 35 H 0.06 1.21 7.95 -2.39 -0.02 1.19 16 36 H 0.09 0.69 6.52 -2.39 -0.02 0.67 16 37 H 0.08 0.61 4.99 -2.39 -0.01 0.59 16 38 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 39 H 0.10 0.87 7.36 -2.39 -0.02 0.85 16 40 H 0.10 0.79 7.07 -2.39 -0.02 0.78 16 41 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.34 11.35 8.10 -89.70 -0.73 10.62 16 44 H 0.07 1.92 8.08 -2.39 -0.02 1.90 16 45 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 46 H 0.40 18.79 7.90 -92.71 -0.73 18.06 16 47 H 0.28 13.82 8.31 -92.71 -0.77 13.04 16 48 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.05 1.56 7.95 -2.39 -0.02 1.54 16 Total: -1.00 -74.19 396.30 1.17 -73.02 By element: Atomic # 1 Polarization: 37.76 SS G_CDS: -0.51 Total: 37.26 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: 6.69 Total: 16.49 kcal Atomic # 7 Polarization: -110.30 SS G_CDS: -6.95 Total: -117.25 kcal Atomic # 8 Polarization: -54.20 SS G_CDS: -0.10 Total: -54.29 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -74.19 1.17 -73.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185050143.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.672 kcal (2) G-P(sol) polarization free energy of solvation -74.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds