Wall clock time and date at job start Fri Apr 10 2020 18:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46672 * 2 1 4 4 C 1.53002 * 109.46869 * 240.00394 * 2 1 3 5 5 C 1.50695 * 109.47004 * 64.99975 * 4 2 1 6 6 O 1.21274 * 120.00413 * 0.27039 * 5 4 2 7 7 N 1.34784 * 119.99635 * 179.97438 * 5 4 2 8 8 C 1.47016 * 125.65078 * 0.02562 * 7 5 4 9 9 C 1.54317 * 107.27257 * 181.02490 * 8 7 5 10 10 C 1.55150 * 102.94509 * 22.18903 * 9 8 7 11 11 H 1.09002 * 111.00151 * 82.61334 * 10 9 8 12 12 N 1.46892 * 111.00843 * 206.42389 * 10 9 8 13 13 C 1.46897 * 111.00507 * 273.54886 * 12 10 9 14 14 C 1.50699 * 109.47537 * 179.97438 * 13 12 10 15 15 O 1.21284 * 119.99850 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99998 * 179.97438 * 14 13 12 17 17 C 1.37095 * 119.99809 * 180.02562 * 16 14 13 18 18 H 1.07991 * 120.00496 * 359.97438 * 17 16 14 19 19 C 1.38956 * 119.99551 * 180.02562 * 17 16 14 20 20 N 1.31408 * 120.00574 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99737 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47017 * 59.99637 * 21 19 17 23 23 H 1.48502 * 109.47260 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47082 * 300.00167 * 21 19 17 25 25 C 1.47422 * 125.64576 * 179.71336 * 7 5 4 26 26 C 1.52995 * 109.47085 * 120.00003 * 2 1 3 27 27 C 1.52995 * 117.50302 * 248.74530 * 26 2 1 28 28 C 1.53003 * 117.49864 * 180.08407 * 26 2 1 29 29 H 1.09008 * 109.47105 * 299.99696 * 1 2 3 30 30 H 1.09004 * 109.47431 * 59.99660 * 1 2 3 31 31 H 1.09000 * 109.47371 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47089 * 304.99723 * 4 2 1 33 33 H 1.09002 * 109.46787 * 185.00065 * 4 2 1 34 34 H 1.09000 * 109.88272 * 300.44196 * 8 7 5 35 35 H 1.09009 * 109.88271 * 61.60210 * 8 7 5 36 36 H 1.09003 * 110.72524 * 140.55669 * 9 8 7 37 37 H 1.09001 * 110.71935 * 263.65117 * 9 8 7 38 38 H 1.00900 * 110.99883 * 37.49997 * 12 10 9 39 39 H 1.09003 * 109.47159 * 299.99793 * 13 12 10 40 40 H 1.09001 * 109.47157 * 59.99379 * 13 12 10 41 41 H 0.97000 * 120.00238 * 0.02562 * 16 14 13 42 42 H 0.97000 * 120.00412 * 179.97438 * 20 19 17 43 43 H 1.08996 * 110.37059 * 274.75033 * 25 7 5 44 44 H 1.09001 * 110.36609 * 37.07329 * 25 7 5 45 45 H 1.09005 * 115.55302 * 34.42039 * 26 2 1 46 46 H 1.09004 * 117.49785 * 0.02562 * 27 26 2 47 47 H 1.08999 * 117.50144 * 145.02241 * 27 26 2 48 48 H 1.08995 * 117.50076 * 214.98493 * 28 26 2 49 49 H 1.09009 * 117.49453 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4765 6 8 1.0156 1.0898 -2.3630 7 7 1.9853 -0.3912 -3.7002 8 6 2.7445 -1.6185 -3.9808 9 6 2.9206 -1.7084 -5.5113 10 6 2.7413 -0.2368 -5.9688 11 1 3.6692 0.3237 -5.8546 12 7 2.2571 -0.1713 -7.3541 13 6 3.3756 -0.2153 -8.3054 14 6 2.8411 -0.1468 -9.7128 15 8 1.6460 -0.0685 -9.9045 16 7 3.6911 -0.1715 -10.7584 17 6 3.2049 -0.1086 -12.0387 18 1 2.1408 -0.0397 -12.2095 19 6 4.0813 -0.1346 -13.1167 20 7 5.3761 -0.2189 -12.9091 21 14 3.4187 -0.0497 -14.8612 22 1 2.6638 1.2162 -15.0429 23 1 4.5495 -0.0935 -15.8229 24 1 2.5161 -1.2035 -15.1047 25 6 1.6569 0.2644 -4.9791 26 6 2.0400 -0.7212 1.2492 27 6 2.7393 0.1230 2.3164 28 6 3.5550 -0.8263 1.4352 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6053 -1.7198 -1.2953 33 1 3.1263 -0.7994 -1.2057 34 1 3.7203 -1.5694 -3.4976 35 1 2.1928 -2.4865 -3.6195 36 1 3.9165 -2.0723 -5.7642 37 1 2.1549 -2.3477 -5.9507 38 1 1.5945 -0.9089 -7.5408 39 1 4.0383 0.6314 -8.1265 40 1 3.9294 -1.1446 -8.1723 41 1 4.6469 -0.2337 -10.6051 42 1 5.9879 -0.2375 -13.6616 43 1 0.6647 -0.0360 -5.3157 44 1 1.7110 1.3481 -4.8747 45 1 1.4319 -1.5595 1.5893 46 1 2.8357 1.1924 2.1288 47 1 2.5916 -0.1600 3.3586 48 1 3.9436 -1.7335 1.8980 49 1 4.1884 -0.3820 0.6673 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188172221.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:38 Heat of formation + Delta-G solvation = -75.427476 kcal Electronic energy + Delta-G solvation = -26710.831176 eV Core-core repulsion = 22865.165896 eV Total energy + Delta-G solvation = -3845.665280 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.29583 -40.19897 -39.28773 -38.33889 -36.19642 -35.54928 -34.07442 -33.26639 -31.76235 -30.19004 -28.88608 -27.49916 -25.66828 -24.57320 -23.76771 -23.12047 -21.93126 -21.14492 -20.85682 -19.97025 -19.91542 -18.27365 -17.75809 -17.36518 -16.97689 -16.61077 -16.31250 -16.25972 -15.95575 -15.64852 -15.29394 -15.06160 -14.71433 -14.60549 -14.12811 -14.06391 -13.90774 -13.73392 -13.65719 -13.46455 -13.21226 -12.98573 -12.84077 -12.62651 -12.43306 -12.40784 -12.35842 -12.23748 -12.12308 -12.10971 -11.79445 -11.71292 -11.49792 -11.09395 -10.87108 -10.68798 -10.35589 -10.00994 -9.67287 -9.31006 -8.46112 -5.94720 1.40294 1.42602 1.53097 1.63280 1.90587 2.06203 2.30199 2.90506 2.94703 3.21289 3.37234 3.49872 3.67680 3.78460 3.84418 3.97961 4.03700 4.10397 4.20662 4.25742 4.30778 4.34364 4.38183 4.49593 4.51157 4.59855 4.62428 4.67156 4.73423 4.81766 4.84466 4.85944 4.91208 5.02139 5.05048 5.10180 5.16924 5.19327 5.26994 5.31660 5.40427 5.41547 5.51818 5.88327 6.09055 6.35973 6.53442 6.60926 7.13331 7.16761 7.57099 8.12677 8.70803 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.039811 B = 0.001745 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.158408 B =16038.061318 C =16399.849388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.043 4.043 3 H 0.056 0.944 4 C -0.119 4.119 5 C 0.519 3.481 6 O -0.583 6.583 7 N -0.620 5.620 8 C 0.104 3.896 9 C -0.160 4.160 10 C 0.084 3.916 11 H 0.102 0.898 12 N -0.675 5.675 13 C 0.070 3.930 14 C 0.436 3.564 15 O -0.625 6.625 16 N -0.572 5.572 17 C -0.336 4.336 18 H 0.078 0.922 19 C -0.011 4.011 20 N -0.918 5.918 21 Si 0.992 3.008 22 H -0.274 1.274 23 H -0.270 1.270 24 H -0.271 1.271 25 C 0.116 3.884 26 C -0.149 4.149 27 C -0.187 4.187 28 C -0.174 4.174 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.349 0.651 39 H 0.104 0.896 40 H 0.077 0.923 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.115 0.885 46 H 0.085 0.915 47 H 0.102 0.898 48 H 0.107 0.893 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.361 -7.304 28.561 29.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.062 4.062 3 H 0.074 0.926 4 C -0.159 4.159 5 C 0.310 3.690 6 O -0.464 6.464 7 N -0.355 5.355 8 C -0.018 4.018 9 C -0.200 4.200 10 C -0.027 4.027 11 H 0.120 0.880 12 N -0.307 5.307 13 C -0.063 4.063 14 C 0.223 3.777 15 O -0.512 6.512 16 N -0.209 5.209 17 C -0.466 4.466 18 H 0.096 0.904 19 C -0.211 4.211 20 N -0.559 5.559 21 Si 0.815 3.185 22 H -0.200 1.200 23 H -0.194 1.194 24 H -0.197 1.197 25 C -0.008 4.008 26 C -0.167 4.167 27 C -0.224 4.224 28 C -0.211 4.211 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.122 0.878 37 H 0.097 0.903 38 H 0.169 0.831 39 H 0.122 0.878 40 H 0.095 0.905 41 H 0.231 0.769 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.133 0.867 46 H 0.104 0.896 47 H 0.120 0.880 48 H 0.125 0.875 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.354 -6.009 28.412 29.042 hybrid contribution 0.232 -0.485 -1.106 1.229 sum 0.586 -6.493 27.306 28.074 Atomic orbital electron populations 1.21866 0.95029 1.01878 1.01702 1.20397 0.95931 0.98068 0.91771 0.92597 1.21731 1.04166 1.00246 0.89717 1.21119 0.78305 0.85262 0.84293 1.90674 1.42391 1.26748 1.86556 1.48631 1.55551 1.26151 1.05119 1.22197 0.97222 0.86391 0.95998 1.23413 1.04577 0.96852 0.95123 1.22740 0.97263 0.96266 0.86475 0.87954 1.59843 1.14960 1.54845 1.01042 1.21519 0.93407 1.03274 0.88051 1.20925 0.86681 0.82262 0.87795 1.90500 1.17536 1.56531 1.86643 1.41909 1.09184 1.64745 1.05065 1.19627 0.93969 1.49858 0.83126 0.90414 1.26006 0.95243 0.96252 1.03596 1.69653 1.02227 1.50018 1.34021 0.85011 0.77798 0.78873 0.76782 1.19966 1.19443 1.19650 1.21999 0.98318 0.97550 0.82887 1.22312 0.95458 1.02097 0.96795 1.23081 1.05033 0.97496 0.96822 1.23046 0.93165 1.02007 1.02911 0.92654 0.93519 0.91897 0.86761 0.86828 0.88729 0.89255 0.87840 0.90318 0.83110 0.87836 0.90530 0.76864 0.91281 0.92197 0.92221 0.86743 0.89616 0.87993 0.87480 0.88734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 8.92 71.98 0.64 -1.93 16 2 C -0.04 -0.65 2.19 -10.79 -0.02 -0.68 16 3 H 0.06 1.11 7.71 -2.39 -0.02 1.09 16 4 C -0.12 -1.56 4.28 29.85 0.13 -1.43 16 5 C 0.52 11.35 7.56 87.65 0.66 12.02 16 6 O -0.58 -18.11 14.23 -3.01 -0.04 -18.15 16 7 N -0.62 -12.10 3.32 -811.38 -2.70 -14.80 16 8 C 0.10 1.21 6.48 86.73 0.56 1.77 16 9 C -0.16 -2.28 6.52 31.78 0.21 -2.07 16 10 C 0.08 1.77 3.33 46.38 0.15 1.93 16 11 H 0.10 2.04 7.92 -2.39 -0.02 2.02 16 12 N -0.68 -19.95 6.00 -488.03 -2.93 -22.88 16 13 C 0.07 2.21 6.04 85.56 0.52 2.72 16 14 C 0.44 20.20 7.82 87.66 0.69 20.88 16 15 O -0.63 -34.36 15.78 -3.04 -0.05 -34.41 16 16 N -0.57 -28.73 5.29 -307.00 -1.62 -30.36 16 17 C -0.34 -18.94 9.68 84.04 0.81 -18.13 16 18 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 19 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 20 N -0.92 -48.81 13.05 21.66 0.28 -48.53 16 21 Si 0.99 42.62 29.55 68.60 2.03 44.64 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 24 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 25 C 0.12 2.83 6.61 86.93 0.57 3.40 16 26 C -0.15 -1.61 5.14 -10.80 -0.06 -1.66 16 27 C -0.19 -2.03 10.18 30.62 0.31 -1.72 16 28 C -0.17 -1.56 9.68 30.62 0.30 -1.26 16 29 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.05 1.11 5.96 -2.39 -0.01 1.10 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.11 1.03 7.13 -2.39 -0.02 1.01 16 34 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.08 1.20 7.81 -2.39 -0.02 1.18 16 38 H 0.35 10.77 8.01 -89.69 -0.72 10.05 16 39 H 0.10 2.99 8.09 -2.39 -0.02 2.97 16 40 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.40 18.77 7.90 -92.71 -0.73 18.04 16 42 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 43 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.06 1.71 8.03 -2.39 -0.02 1.69 16 45 H 0.11 1.04 8.11 -2.38 -0.02 1.02 16 46 H 0.09 1.07 8.05 -2.38 -0.02 1.05 16 47 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.09 0.84 7.59 -2.38 -0.02 0.83 16 Total: -1.00 -73.01 397.68 0.42 -72.59 By element: Atomic # 1 Polarization: 38.67 SS G_CDS: -0.50 Total: 38.17 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 5.94 Total: 13.72 kcal Atomic # 7 Polarization: -109.59 SS G_CDS: -6.96 Total: -116.56 kcal Atomic # 8 Polarization: -52.47 SS G_CDS: -0.09 Total: -52.56 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Total: -73.01 0.42 -72.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188172221.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.837 kcal (2) G-P(sol) polarization free energy of solvation -73.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds