Wall clock time and date at job start Fri Apr 10 2020 18:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47273 * 2 1 4 4 C 1.53003 * 109.47194 * 120.00566 * 2 1 3 5 5 C 1.50705 * 109.46799 * 294.99353 * 4 2 1 6 6 O 1.21276 * 120.00034 * 0.02562 * 5 4 2 7 7 N 1.34775 * 119.99931 * 179.97438 * 5 4 2 8 8 C 1.47426 * 125.64777 * 359.97438 * 7 5 4 9 9 C 1.54910 * 104.83209 * 155.89013 * 8 7 5 10 10 C 1.55154 * 101.58031 * 37.01037 * 9 8 7 11 11 H 1.08995 * 110.87338 * 82.93395 * 10 9 8 12 12 N 1.46903 * 110.71882 * 206.13764 * 10 9 8 13 13 C 1.46902 * 110.99497 * 268.52269 * 12 10 9 14 14 C 1.50705 * 109.47080 * 180.02562 * 13 12 10 15 15 O 1.21291 * 119.99593 * 359.97438 * 14 13 12 16 16 N 1.34779 * 120.00166 * 179.97438 * 14 13 12 17 17 C 1.37095 * 119.99671 * 179.97438 * 16 14 13 18 18 H 1.08002 * 120.00266 * 359.97438 * 17 16 14 19 19 C 1.38956 * 119.99634 * 180.02562 * 17 16 14 20 20 N 1.31412 * 119.99693 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99846 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47060 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46971 * 119.99918 * 21 19 17 24 24 H 1.48493 * 109.46956 * 239.99637 * 21 19 17 25 25 C 1.47019 * 125.65013 * 179.97438 * 7 5 4 26 26 C 1.53003 * 109.46907 * 239.99929 * 2 1 3 27 27 C 1.52999 * 117.49634 * 128.74777 * 26 2 1 28 28 C 1.53002 * 117.49515 * 60.08974 * 26 2 1 29 29 H 1.09005 * 109.46824 * 300.00065 * 1 2 3 30 30 H 1.08997 * 109.47668 * 59.99397 * 1 2 3 31 31 H 1.09003 * 109.47603 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47099 * 174.99824 * 4 2 1 33 33 H 1.08995 * 109.47059 * 54.99739 * 4 2 1 34 34 H 1.08998 * 110.36718 * 274.72906 * 8 7 5 35 35 H 1.09005 * 110.36600 * 37.05467 * 8 7 5 36 36 H 1.09002 * 111.00097 * 155.08840 * 9 8 7 37 37 H 1.08999 * 111.00452 * 278.93764 * 9 8 7 38 38 H 1.00900 * 111.00375 * 32.47199 * 12 10 9 39 39 H 1.09006 * 109.47123 * 299.99493 * 13 12 10 40 40 H 1.09000 * 109.47403 * 59.99871 * 13 12 10 41 41 H 0.96996 * 119.99806 * 0.02562 * 16 14 13 42 42 H 0.97004 * 119.99134 * 180.02562 * 20 19 17 43 43 H 1.09001 * 109.88389 * 300.46361 * 25 7 5 44 44 H 1.09004 * 109.87600 * 61.47318 * 25 7 5 45 45 H 1.08996 * 115.55223 * 274.42392 * 26 2 1 46 46 H 1.08997 * 117.49938 * 359.97438 * 27 26 2 47 47 H 1.08998 * 117.49812 * 145.02976 * 27 26 2 48 48 H 1.09005 * 117.49972 * 214.97732 * 28 26 2 49 49 H 1.09005 * 117.50330 * 359.97239 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6414 0.0570 2.4766 6 8 1.0111 1.0869 2.3634 7 7 1.9846 -0.3921 3.7001 8 6 2.7448 -1.6235 3.9815 9 6 3.3950 -1.3804 5.3664 10 6 2.2780 -0.5929 6.1009 11 1 1.5348 -1.2719 6.5189 12 7 2.8488 0.2605 7.1516 13 6 2.8919 -0.4466 8.4385 14 6 3.4814 0.4584 9.4895 15 8 3.8315 1.5818 9.1952 16 7 3.6195 0.0196 10.7563 17 6 4.1562 0.8428 11.7122 18 1 4.4688 1.8428 11.4500 19 6 4.2991 0.3901 13.0182 20 7 3.9193 -0.8268 13.3370 21 14 5.0311 1.5116 14.3205 22 1 5.3750 2.8208 13.7099 23 1 4.0419 1.7180 15.4087 24 1 6.2576 0.8875 14.8785 25 6 1.6627 0.2650 4.9754 26 6 2.0399 -0.7213 -1.2493 27 6 3.0762 0.0039 -2.1101 28 6 1.6373 -0.1483 -2.6096 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 3.1263 -0.7996 1.2055 33 1 1.6054 -1.7199 1.2950 34 1 2.0746 -2.4820 4.0225 35 1 3.5130 -1.7766 3.2234 36 1 3.6043 -2.3239 5.8706 37 1 4.2998 -0.7799 5.2732 38 1 3.7653 0.5919 6.8902 39 1 1.8812 -0.7317 8.7305 40 1 3.5079 -1.3407 8.3414 41 1 3.3398 -0.8789 10.9915 42 1 4.0187 -1.1426 14.2488 43 1 2.0925 1.2665 4.9952 44 1 0.5814 0.3232 5.0997 45 1 2.1251 -1.8046 -1.1648 46 1 3.3944 0.9950 -1.7867 47 1 3.8430 -0.6024 -2.5923 48 1 1.4581 -0.8546 -3.4202 49 1 1.0087 0.7423 -2.6146 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188172222.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:41 Heat of formation + Delta-G solvation = -75.267979 kcal Electronic energy + Delta-G solvation = -26654.941449 eV Core-core repulsion = 22809.283085 eV Total energy + Delta-G solvation = -3845.658364 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.27935 -40.19666 -39.28260 -38.36220 -36.19233 -35.54297 -34.09991 -33.26939 -31.72808 -30.16266 -28.82244 -27.52040 -25.73389 -24.70258 -23.73427 -23.09102 -21.88462 -21.11854 -20.73889 -20.09244 -19.92372 -18.21820 -17.66476 -17.60042 -16.81147 -16.54531 -16.36760 -16.30787 -16.01337 -15.70899 -15.23275 -15.08439 -14.64898 -14.56198 -14.14600 -14.12581 -13.93564 -13.72770 -13.52882 -13.47314 -13.11641 -12.96991 -12.92083 -12.68669 -12.44286 -12.41714 -12.36155 -12.25832 -12.11799 -12.02707 -11.75451 -11.71264 -11.51423 -11.17267 -10.79731 -10.71612 -10.35566 -10.01040 -9.66349 -9.30918 -8.46965 -5.95287 1.36575 1.42308 1.56066 1.64650 1.92860 2.05826 2.29817 2.91572 2.94412 3.20629 3.38887 3.48548 3.65677 3.72888 3.84482 4.03191 4.05693 4.10326 4.22746 4.27214 4.33973 4.37464 4.39224 4.49897 4.51610 4.61013 4.61887 4.68587 4.74174 4.81609 4.82920 4.86072 4.91531 5.02157 5.03796 5.08159 5.11419 5.22595 5.30155 5.30437 5.41574 5.45083 5.50820 5.89784 6.10760 6.34441 6.54467 6.60678 7.13271 7.18189 7.56875 8.12716 8.70455 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.040885 B = 0.001709 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.687801 B =16375.852194 C =16453.589975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.044 4.044 3 H 0.052 0.948 4 C -0.118 4.118 5 C 0.517 3.483 6 O -0.585 6.585 7 N -0.621 5.621 8 C 0.103 3.897 9 C -0.160 4.160 10 C 0.084 3.916 11 H 0.111 0.889 12 N -0.679 5.679 13 C 0.070 3.930 14 C 0.435 3.565 15 O -0.627 6.627 16 N -0.572 5.572 17 C -0.335 4.335 18 H 0.077 0.923 19 C -0.011 4.011 20 N -0.918 5.918 21 Si 0.991 3.009 22 H -0.276 1.276 23 H -0.272 1.272 24 H -0.269 1.269 25 C 0.116 3.884 26 C -0.145 4.145 27 C -0.184 4.184 28 C -0.182 4.182 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.113 0.887 33 H 0.120 0.880 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.072 0.928 38 H 0.347 0.653 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.398 0.602 42 H 0.278 0.722 43 H 0.047 0.953 44 H 0.059 0.941 45 H 0.123 0.877 46 H 0.084 0.916 47 H 0.106 0.894 48 H 0.105 0.895 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.954 -11.263 -27.432 29.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.063 4.063 3 H 0.070 0.930 4 C -0.158 4.158 5 C 0.308 3.692 6 O -0.466 6.466 7 N -0.355 5.355 8 C -0.019 4.019 9 C -0.199 4.199 10 C -0.026 4.026 11 H 0.129 0.871 12 N -0.311 5.311 13 C -0.062 4.062 14 C 0.223 3.777 15 O -0.514 6.514 16 N -0.209 5.209 17 C -0.464 4.464 18 H 0.095 0.905 19 C -0.211 4.211 20 N -0.559 5.559 21 Si 0.815 3.185 22 H -0.200 1.200 23 H -0.197 1.197 24 H -0.195 1.195 25 C -0.008 4.008 26 C -0.163 4.163 27 C -0.221 4.221 28 C -0.219 4.219 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.131 0.869 33 H 0.138 0.862 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.127 0.873 37 H 0.090 0.910 38 H 0.167 0.833 39 H 0.124 0.876 40 H 0.095 0.905 41 H 0.232 0.768 42 H 0.087 0.913 43 H 0.065 0.935 44 H 0.078 0.922 45 H 0.141 0.859 46 H 0.103 0.897 47 H 0.124 0.876 48 H 0.124 0.876 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.666 -9.736 -27.421 29.328 hybrid contribution 0.793 0.060 1.020 1.293 sum -2.873 -9.677 -26.401 28.265 Atomic orbital electron populations 1.21859 0.95056 1.01914 1.01537 1.20405 0.95879 0.98072 0.91928 0.92960 1.21719 1.04144 1.00342 0.89571 1.21148 0.78422 0.85224 0.84371 1.90674 1.42317 1.26963 1.86611 1.48665 1.55664 1.26126 1.05012 1.22542 0.95737 0.86365 0.97280 1.23549 0.97881 1.02526 0.95981 1.22610 0.97403 0.92599 0.90033 0.87130 1.59876 1.30916 1.38899 1.01394 1.21548 1.02307 0.94256 0.88131 1.20974 0.83660 0.88930 0.84149 1.90506 1.56145 1.23042 1.81671 1.41914 1.55592 1.15983 1.07427 1.19690 1.39094 0.97992 0.89671 0.90537 1.25997 0.97551 0.97996 0.99536 1.69669 1.47695 1.17285 1.21257 0.84894 0.78168 0.77879 0.77527 1.20036 1.19682 1.19453 1.21733 0.99582 0.96504 0.82942 1.22316 1.03634 0.99753 0.90595 1.23099 0.92829 1.01957 1.04208 1.22996 0.98013 1.03396 0.97452 0.93605 0.92811 0.91810 0.86852 0.86220 0.88602 0.87997 0.87310 0.90975 0.83331 0.87566 0.90461 0.76822 0.91285 0.93464 0.92232 0.85899 0.89748 0.87578 0.87635 0.89638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 8.77 71.98 0.63 -1.94 16 2 C -0.04 -0.68 2.19 -10.79 -0.02 -0.71 16 3 H 0.05 1.08 7.71 -2.39 -0.02 1.07 16 4 C -0.12 -1.54 4.16 29.85 0.12 -1.42 16 5 C 0.52 11.54 7.57 87.66 0.66 12.20 16 6 O -0.59 -18.66 14.29 -3.02 -0.04 -18.70 16 7 N -0.62 -12.24 3.33 -811.79 -2.70 -14.94 16 8 C 0.10 1.13 6.69 86.86 0.58 1.71 16 9 C -0.16 -2.26 6.67 31.99 0.21 -2.05 16 10 C 0.08 1.75 3.28 46.10 0.15 1.90 16 11 H 0.11 1.96 7.82 -2.39 -0.02 1.94 16 12 N -0.68 -20.29 5.93 -489.43 -2.90 -23.19 16 13 C 0.07 2.20 6.03 85.56 0.52 2.71 16 14 C 0.44 20.27 7.82 87.66 0.69 20.95 16 15 O -0.63 -34.83 15.78 -3.06 -0.05 -34.87 16 16 N -0.57 -28.78 5.29 -306.97 -1.62 -30.40 16 17 C -0.33 -18.94 9.68 84.04 0.81 -18.13 16 18 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 19 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 20 N -0.92 -48.77 13.05 21.67 0.28 -48.49 16 21 Si 0.99 42.77 29.55 68.60 2.03 44.80 16 22 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 23 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 24 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 25 C 0.12 2.87 6.62 86.73 0.57 3.44 16 26 C -0.14 -1.58 5.15 -10.79 -0.06 -1.64 16 27 C -0.18 -2.04 10.18 30.62 0.31 -1.73 16 28 C -0.18 -2.02 9.74 30.62 0.30 -1.73 16 29 H 0.04 1.10 5.95 -2.38 -0.01 1.08 16 30 H 0.05 0.90 7.29 -2.39 -0.02 0.88 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.11 1.05 7.85 -2.39 -0.02 1.03 16 33 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.10 0.67 7.48 -2.38 -0.02 0.65 16 36 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.07 1.18 7.77 -2.39 -0.02 1.17 16 38 H 0.35 11.09 7.91 -89.69 -0.71 10.38 16 39 H 0.11 3.00 8.08 -2.38 -0.02 2.98 16 40 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.40 18.75 7.90 -92.71 -0.73 18.02 16 42 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 43 H 0.05 1.45 8.03 -2.39 -0.02 1.44 16 44 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 45 H 0.12 0.91 8.11 -2.39 -0.02 0.89 16 46 H 0.08 1.10 8.05 -2.39 -0.02 1.08 16 47 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 49 H 0.09 1.10 7.61 -2.38 -0.02 1.08 16 Total: -1.00 -74.93 396.75 0.46 -74.48 By element: Atomic # 1 Polarization: 38.32 SS G_CDS: -0.49 Total: 37.84 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 5.95 Total: 13.49 kcal Atomic # 7 Polarization: -110.09 SS G_CDS: -6.94 Total: -117.03 kcal Atomic # 8 Polarization: -53.49 SS G_CDS: -0.09 Total: -53.58 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -74.93 0.46 -74.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188172222.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.792 kcal (2) G-P(sol) polarization free energy of solvation -74.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds