Wall clock time and date at job start Fri Apr 10 2020 18:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46915 * 2 1 4 4 C 1.50699 * 109.47536 * 240.00122 * 2 1 3 5 5 O 1.21285 * 119.99445 * 248.90091 * 4 2 1 6 6 N 1.34770 * 120.00064 * 68.89156 * 4 2 1 7 7 C 1.47028 * 125.64992 * 4.28906 * 6 4 2 8 8 C 1.54321 * 107.27226 * 178.89903 * 7 6 4 9 9 C 1.55152 * 102.94344 * 337.80911 * 8 7 6 10 10 H 1.09001 * 111.00384 * 277.43053 * 9 8 7 11 11 N 1.46898 * 111.00623 * 153.57474 * 9 8 7 12 12 C 1.46901 * 111.00066 * 61.74811 * 11 9 8 13 13 C 1.46904 * 111.00068 * 185.70222 * 11 9 8 14 14 C 1.50696 * 109.47332 * 170.00344 * 13 11 9 15 15 O 1.21294 * 119.99736 * 359.97438 * 14 13 11 16 16 N 1.34770 * 120.00486 * 179.97438 * 14 13 11 17 17 C 1.37098 * 120.00421 * 179.97438 * 16 14 13 18 18 H 1.07998 * 120.00118 * 359.97438 * 17 16 14 19 19 C 1.38949 * 119.99990 * 180.02562 * 17 16 14 20 20 N 1.31411 * 120.00492 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99924 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47092 * 60.00013 * 21 19 17 23 23 H 1.48500 * 109.47136 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47391 * 300.00130 * 21 19 17 25 25 C 1.47422 * 125.64657 * 183.97698 * 6 4 2 26 26 C 1.53000 * 109.47077 * 119.99612 * 2 1 3 27 27 C 1.52999 * 117.50047 * 248.74944 * 26 2 1 28 28 C 1.53004 * 117.49973 * 180.08813 * 26 2 1 29 29 H 1.09001 * 109.46601 * 186.21844 * 1 2 3 30 30 H 1.09002 * 109.46954 * 306.22006 * 1 2 3 31 31 H 1.08994 * 109.46898 * 66.22248 * 1 2 3 32 32 H 1.08998 * 109.87921 * 298.32083 * 7 6 4 33 33 H 1.08996 * 109.88193 * 59.48165 * 7 6 4 34 34 H 1.08998 * 110.71618 * 96.17041 * 8 7 6 35 35 H 1.08996 * 110.72236 * 219.26340 * 8 7 6 36 36 H 1.08997 * 109.46779 * 65.32609 * 12 11 9 37 37 H 1.08998 * 109.47212 * 185.33144 * 12 11 9 38 38 H 1.08998 * 109.46438 * 305.32810 * 12 11 9 39 39 H 1.09009 * 109.46881 * 289.99965 * 13 11 9 40 40 H 1.08997 * 109.47105 * 49.99710 * 13 11 9 41 41 H 0.97002 * 119.99678 * 0.02562 * 16 14 13 42 42 H 0.97000 * 120.00442 * 180.02562 * 20 19 17 43 43 H 1.08998 * 110.37102 * 323.00200 * 25 6 4 44 44 H 1.09002 * 110.36759 * 85.33315 * 25 6 4 45 45 H 1.08996 * 115.55156 * 34.41993 * 26 2 1 46 46 H 1.09001 * 117.50060 * 0.02562 * 27 26 2 47 47 H 1.09000 * 117.49956 * 145.01959 * 27 26 2 48 48 H 1.08996 * 117.50277 * 214.97899 * 28 26 2 49 49 H 1.09005 * 117.49734 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 8 2.5911 -1.7818 -1.1263 6 7 1.8609 -0.1551 -2.4464 7 6 1.2841 1.1716 -2.7089 8 6 1.3138 1.3900 -4.2363 9 6 2.4231 0.4121 -4.7057 10 1 3.4117 0.8543 -4.5821 11 7 2.2046 -0.0030 -6.0978 12 6 2.2544 1.1511 -7.0053 13 6 3.1747 -1.0306 -6.4992 14 6 2.7742 -1.6058 -7.8332 15 8 1.7782 -1.2001 -8.3941 16 7 3.5224 -2.5711 -8.4030 17 6 3.1577 -3.0948 -9.6163 18 1 2.2705 -2.7342 -10.1155 19 6 3.9290 -4.0904 -10.2034 20 7 5.0077 -4.5303 -9.5955 21 14 3.4316 -4.8044 -11.8563 22 1 3.4050 -3.7238 -12.8746 23 1 4.4127 -5.8425 -12.2625 24 1 2.0820 -5.4142 -11.7463 25 6 2.2264 -0.7748 -3.7332 26 6 2.0400 -0.7212 1.2493 27 6 2.7393 0.1232 2.3165 28 6 3.5551 -0.8262 1.4354 29 1 -0.3632 -1.0217 0.1113 30 1 -0.3633 0.6073 0.8291 31 1 -0.3633 0.4143 -0.9404 32 1 0.2557 1.2064 -2.3494 33 1 1.8785 1.9389 -2.2131 34 1 0.3544 1.1276 -4.6821 35 1 1.5786 2.4204 -4.4735 36 1 3.2599 1.5717 -7.0033 37 1 1.9964 0.8309 -8.0147 38 1 1.5437 1.9069 -6.6710 39 1 4.1656 -0.5833 -6.5792 40 1 3.1935 -1.8240 -5.7521 41 1 4.3187 -2.8958 -7.9542 42 1 5.5463 -5.2251 -10.0056 43 1 3.1525 -1.3406 -3.6323 44 1 1.4222 -1.4211 -4.0850 45 1 1.4320 -1.5593 1.5894 46 1 2.8356 1.1926 2.1288 47 1 2.5915 -0.1597 3.3587 48 1 3.9437 -1.7332 1.8984 49 1 4.1885 -0.3819 0.6676 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189547059.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:44 Heat of formation + Delta-G solvation = -33.514595 kcal Electronic energy + Delta-G solvation = -27767.895984 eV Core-core repulsion = 23924.048183 eV Total energy + Delta-G solvation = -3843.847801 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.56017 -38.98574 -37.96088 -36.94978 -35.47080 -33.82940 -32.81252 -31.25756 -30.76254 -28.95547 -27.85145 -25.39730 -24.90752 -23.84114 -22.88423 -22.56626 -21.26985 -20.25398 -19.24580 -18.96215 -17.83467 -17.38800 -16.83757 -15.98855 -15.81206 -15.27276 -15.03084 -14.82051 -14.61851 -14.54893 -14.23296 -13.92383 -13.72263 -13.39851 -13.15868 -13.01692 -12.99393 -12.58102 -12.36733 -12.12314 -11.98198 -11.79701 -11.75240 -11.51807 -11.42174 -11.34943 -11.24878 -11.00380 -10.94328 -10.76565 -10.62363 -10.42876 -10.34338 -10.19907 -9.71598 -9.45651 -8.75046 -8.48275 -7.98373 -7.88334 -6.39886 -3.80909 2.53571 2.72651 3.21130 3.26968 3.31068 3.58345 3.90523 3.95097 4.20648 4.22399 4.24516 4.44676 4.56137 4.60031 4.76897 4.83849 4.90613 4.96707 5.06125 5.11325 5.18774 5.20324 5.27099 5.30119 5.38153 5.43522 5.56850 5.59880 5.64412 5.71195 5.71680 5.75925 5.81584 5.88040 5.89110 5.90128 5.92869 5.99604 6.05844 6.16013 6.28889 6.52876 7.18899 7.31959 7.40708 7.56519 8.07267 8.07726 8.63169 9.19415 9.55886 10.07519 10.77753 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.019710 B = 0.002405 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.281581 B =11640.152675 C =12542.397296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.075 4.075 3 H 0.092 0.908 4 C 0.531 3.469 5 O -0.529 6.529 6 N -0.619 5.619 7 C 0.100 3.900 8 C -0.123 4.123 9 C 0.069 3.931 10 H 0.053 0.947 11 N -0.506 5.506 12 C 0.023 3.977 13 C 0.042 3.958 14 C 0.445 3.555 15 O -0.578 6.578 16 N -0.563 5.563 17 C -0.299 4.299 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.931 3.069 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.273 1.273 25 C 0.112 3.888 26 C -0.134 4.134 27 C -0.182 4.182 28 C -0.160 4.160 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.015 0.985 37 H 0.099 0.901 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.089 0.911 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.108 0.892 46 H 0.092 0.908 47 H 0.094 0.906 48 H 0.095 0.905 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.819 13.823 21.000 25.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.096 4.096 3 H 0.110 0.890 4 C 0.319 3.681 5 O -0.405 6.405 6 N -0.354 5.354 7 C -0.024 4.024 8 C -0.161 4.161 9 C -0.041 4.041 10 H 0.071 0.929 11 N -0.231 5.231 12 C -0.125 4.125 13 C -0.089 4.089 14 C 0.230 3.770 15 O -0.463 6.463 16 N -0.200 5.200 17 C -0.429 4.429 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.543 5.543 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.011 4.011 26 C -0.153 4.153 27 C -0.219 4.219 28 C -0.197 4.197 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.034 0.966 37 H 0.117 0.883 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.107 0.893 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.126 0.874 46 H 0.111 0.889 47 H 0.113 0.887 48 H 0.113 0.887 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.503 13.112 20.655 25.077 hybrid contribution 1.217 -0.226 -0.526 1.345 sum -4.287 12.886 20.129 24.282 Atomic orbital electron populations 1.21805 0.92348 1.03163 1.02790 1.20849 0.97699 0.99632 0.91443 0.88952 1.20305 0.78976 0.85745 0.83056 1.90725 1.42045 1.21961 1.85749 1.48443 1.62466 1.18653 1.05841 1.22163 0.98732 0.84512 0.96945 1.22699 1.00730 0.99580 0.93099 1.22731 0.97323 0.94784 0.89268 0.92873 1.61625 1.50159 1.11415 0.99857 1.22548 0.98631 0.91580 0.99702 1.21938 0.93499 0.95496 0.97988 1.19664 0.86198 0.83926 0.87200 1.90475 1.27746 1.62933 1.65109 1.41860 1.25000 1.33522 1.19607 1.19640 1.10391 1.17240 0.95601 0.87948 1.25266 0.95649 0.97105 0.99936 1.69604 1.15431 1.29719 1.39518 0.85920 0.78251 0.78541 0.81503 1.19939 1.20999 1.19876 1.22219 1.01865 0.95489 0.81515 1.21966 0.96134 1.01501 0.95660 1.23097 1.05086 0.97454 0.96305 1.22815 0.93560 1.01242 1.02112 0.91815 0.91241 0.91601 0.90801 0.91537 0.88995 0.90083 0.96648 0.88277 0.92047 0.93344 0.89308 0.77476 0.91805 0.90369 0.89939 0.87384 0.88937 0.88720 0.88689 0.89125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.09 37.16 0.34 -0.67 16 2 C -0.07 -0.65 2.27 -91.77 -0.21 -0.86 16 3 H 0.09 0.66 7.73 -51.93 -0.40 0.26 16 4 C 0.53 6.60 6.91 -10.99 -0.08 6.52 16 5 O -0.53 -8.69 15.63 5.55 0.09 -8.60 16 6 N -0.62 -7.08 3.33 -170.66 -0.57 -7.65 16 7 C 0.10 0.81 6.13 -3.06 -0.02 0.80 16 8 C -0.12 -1.15 5.33 -24.90 -0.13 -1.28 16 9 C 0.07 0.85 2.70 -65.68 -0.18 0.67 16 10 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 11 N -0.51 -8.06 4.40 -233.88 -1.03 -9.09 16 12 C 0.02 0.35 9.05 60.07 0.54 0.89 16 13 C 0.04 0.75 5.33 -4.98 -0.03 0.73 16 14 C 0.44 10.44 7.52 -10.99 -0.08 10.36 16 15 O -0.58 -15.32 13.88 5.55 0.08 -15.24 16 16 N -0.56 -14.35 5.29 -10.97 -0.06 -14.41 16 17 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 18 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 19 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 20 N -0.90 -24.78 13.05 55.50 0.72 -24.05 16 21 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 C 0.11 1.49 5.35 -2.64 -0.01 1.48 16 26 C -0.13 -1.21 4.64 -90.62 -0.42 -1.63 16 27 C -0.18 -1.32 10.18 -26.69 -0.27 -1.59 16 28 C -0.16 -1.53 9.21 -26.69 -0.25 -1.77 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.44 5.53 -51.93 -0.29 0.15 16 32 H 0.07 0.49 5.89 -51.93 -0.31 0.19 16 33 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.08 0.62 7.98 -51.93 -0.41 0.21 16 36 H 0.01 0.21 8.13 -51.93 -0.42 -0.21 16 37 H 0.10 1.88 5.91 -51.93 -0.31 1.57 16 38 H 0.06 0.77 6.94 -51.93 -0.36 0.41 16 39 H 0.05 0.80 8.11 -51.92 -0.42 0.38 16 40 H 0.09 1.50 6.71 -51.93 -0.35 1.15 16 41 H 0.39 9.64 7.90 -40.82 -0.32 9.31 16 42 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.08 1.13 7.65 -51.93 -0.40 0.73 16 44 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.11 1.00 8.11 -51.93 -0.42 0.58 16 46 H 0.09 0.58 8.05 -51.93 -0.42 0.16 16 47 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 48 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 388.70 15.07 5.86 5.86 Total: -1.00 -32.79 388.70 -9.11 -41.89 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -8.14 Total: 9.50 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -1.03 Total: 5.64 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: -0.93 Total: -55.21 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: 0.16 Total: -23.84 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.79 -9.11 -41.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189547059.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.380 kcal (2) G-P(sol) polarization free energy of solvation -32.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds