Wall clock time and date at job start Fri Apr 10 2020 18:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46915 * 2 1 4 4 C 1.50699 * 109.47536 * 240.00122 * 2 1 3 5 5 O 1.21285 * 119.99445 * 248.90091 * 4 2 1 6 6 N 1.34770 * 120.00064 * 68.89156 * 4 2 1 7 7 C 1.47028 * 125.64992 * 4.28906 * 6 4 2 8 8 C 1.54321 * 107.27226 * 178.89903 * 7 6 4 9 9 C 1.55152 * 102.94344 * 337.80911 * 8 7 6 10 10 H 1.09001 * 111.00384 * 277.43053 * 9 8 7 11 11 N 1.46898 * 111.00623 * 153.57474 * 9 8 7 12 12 C 1.46901 * 111.00066 * 61.74811 * 11 9 8 13 13 C 1.46904 * 111.00068 * 185.70222 * 11 9 8 14 14 C 1.50696 * 109.47332 * 170.00344 * 13 11 9 15 15 O 1.21294 * 119.99736 * 359.97438 * 14 13 11 16 16 N 1.34770 * 120.00486 * 179.97438 * 14 13 11 17 17 C 1.37098 * 120.00421 * 179.97438 * 16 14 13 18 18 H 1.07998 * 120.00118 * 359.97438 * 17 16 14 19 19 C 1.38949 * 119.99990 * 180.02562 * 17 16 14 20 20 N 1.31411 * 120.00492 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99924 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47092 * 60.00013 * 21 19 17 23 23 H 1.48500 * 109.47136 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47391 * 300.00130 * 21 19 17 25 25 C 1.47422 * 125.64657 * 183.97698 * 6 4 2 26 26 C 1.53000 * 109.47077 * 119.99612 * 2 1 3 27 27 C 1.52999 * 117.50047 * 248.74944 * 26 2 1 28 28 C 1.53004 * 117.49973 * 180.08813 * 26 2 1 29 29 H 1.09001 * 109.46601 * 186.21844 * 1 2 3 30 30 H 1.09002 * 109.46954 * 306.22006 * 1 2 3 31 31 H 1.08994 * 109.46898 * 66.22248 * 1 2 3 32 32 H 1.08998 * 109.87921 * 298.32083 * 7 6 4 33 33 H 1.08996 * 109.88193 * 59.48165 * 7 6 4 34 34 H 1.08998 * 110.71618 * 96.17041 * 8 7 6 35 35 H 1.08996 * 110.72236 * 219.26340 * 8 7 6 36 36 H 1.08997 * 109.46779 * 65.32609 * 12 11 9 37 37 H 1.08998 * 109.47212 * 185.33144 * 12 11 9 38 38 H 1.08998 * 109.46438 * 305.32810 * 12 11 9 39 39 H 1.09009 * 109.46881 * 289.99965 * 13 11 9 40 40 H 1.08997 * 109.47105 * 49.99710 * 13 11 9 41 41 H 0.97002 * 119.99678 * 0.02562 * 16 14 13 42 42 H 0.97000 * 120.00442 * 180.02562 * 20 19 17 43 43 H 1.08998 * 110.37102 * 323.00200 * 25 6 4 44 44 H 1.09002 * 110.36759 * 85.33315 * 25 6 4 45 45 H 1.08996 * 115.55156 * 34.41993 * 26 2 1 46 46 H 1.09001 * 117.50060 * 0.02562 * 27 26 2 47 47 H 1.09000 * 117.49956 * 145.01959 * 27 26 2 48 48 H 1.08996 * 117.50277 * 214.97899 * 28 26 2 49 49 H 1.09005 * 117.49734 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 8 2.5911 -1.7818 -1.1263 6 7 1.8609 -0.1551 -2.4464 7 6 1.2841 1.1716 -2.7089 8 6 1.3138 1.3900 -4.2363 9 6 2.4231 0.4121 -4.7057 10 1 3.4117 0.8543 -4.5821 11 7 2.2046 -0.0030 -6.0978 12 6 2.2544 1.1511 -7.0053 13 6 3.1747 -1.0306 -6.4992 14 6 2.7742 -1.6058 -7.8332 15 8 1.7782 -1.2001 -8.3941 16 7 3.5224 -2.5711 -8.4030 17 6 3.1577 -3.0948 -9.6163 18 1 2.2705 -2.7342 -10.1155 19 6 3.9290 -4.0904 -10.2034 20 7 5.0077 -4.5303 -9.5955 21 14 3.4316 -4.8044 -11.8563 22 1 3.4050 -3.7238 -12.8746 23 1 4.4127 -5.8425 -12.2625 24 1 2.0820 -5.4142 -11.7463 25 6 2.2264 -0.7748 -3.7332 26 6 2.0400 -0.7212 1.2493 27 6 2.7393 0.1232 2.3165 28 6 3.5551 -0.8262 1.4354 29 1 -0.3632 -1.0217 0.1113 30 1 -0.3633 0.6073 0.8291 31 1 -0.3633 0.4143 -0.9404 32 1 0.2557 1.2064 -2.3494 33 1 1.8785 1.9389 -2.2131 34 1 0.3544 1.1276 -4.6821 35 1 1.5786 2.4204 -4.4735 36 1 3.2599 1.5717 -7.0033 37 1 1.9964 0.8309 -8.0147 38 1 1.5437 1.9069 -6.6710 39 1 4.1656 -0.5833 -6.5792 40 1 3.1935 -1.8240 -5.7521 41 1 4.3187 -2.8958 -7.9542 42 1 5.5463 -5.2251 -10.0056 43 1 3.1525 -1.3406 -3.6323 44 1 1.4222 -1.4211 -4.0850 45 1 1.4320 -1.5593 1.5894 46 1 2.8356 1.1926 2.1288 47 1 2.5915 -0.1597 3.3587 48 1 3.9437 -1.7332 1.8984 49 1 4.1885 -0.3819 0.6676 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189547059.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:44 Heat of formation + Delta-G solvation = -56.288868 kcal Electronic energy + Delta-G solvation = -27768.883551 eV Core-core repulsion = 23924.048183 eV Total energy + Delta-G solvation = -3844.835368 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.48435 -40.42852 -39.26054 -37.84759 -36.73641 -35.79531 -33.55975 -33.29061 -31.70542 -29.93118 -29.31881 -26.75238 -26.14910 -24.95915 -23.87481 -23.21342 -22.01608 -21.42069 -20.86532 -19.95382 -19.80740 -18.30500 -17.93269 -17.51692 -16.71611 -16.58466 -16.32059 -16.06785 -15.92975 -15.58442 -15.41068 -15.38505 -15.04782 -14.64832 -14.32940 -13.98140 -13.89789 -13.70432 -13.46282 -13.28329 -13.14736 -13.07362 -12.78798 -12.68847 -12.58882 -12.44354 -12.37621 -12.30361 -12.13816 -12.08066 -11.86381 -11.74244 -11.45721 -11.34094 -11.00740 -10.61779 -10.29903 -10.01579 -9.67520 -9.27060 -8.46831 -5.95923 1.39069 1.40588 1.51910 1.61571 1.83602 2.03918 2.27810 2.73020 2.94396 3.19494 3.30658 3.44311 3.56518 3.66013 3.80768 3.92351 4.03206 4.15095 4.17512 4.24578 4.27198 4.31370 4.35095 4.39413 4.46936 4.56465 4.58177 4.59519 4.71426 4.73036 4.81049 4.84102 4.90716 4.99815 5.02428 5.06373 5.16776 5.20044 5.24988 5.26223 5.29693 5.37226 5.40339 5.83378 6.03151 6.18466 6.51969 6.59303 7.11893 7.14925 7.55122 8.10418 8.70529 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.019710 B = 0.002405 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.281581 B =11640.152675 C =12542.397296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.066 4.066 3 H 0.119 0.881 4 C 0.522 3.478 5 O -0.582 6.582 6 N -0.618 5.618 7 C 0.098 3.902 8 C -0.115 4.115 9 C 0.073 3.927 10 H 0.065 0.935 11 N -0.523 5.523 12 C 0.028 3.972 13 C 0.055 3.945 14 C 0.444 3.556 15 O -0.610 6.610 16 N -0.576 5.576 17 C -0.331 4.331 18 H 0.081 0.919 19 C -0.016 4.016 20 N -0.923 5.923 21 Si 0.994 3.006 22 H -0.269 1.269 23 H -0.272 1.272 24 H -0.272 1.272 25 C 0.112 3.888 26 C -0.147 4.147 27 C -0.152 4.152 28 C -0.184 4.184 29 H 0.047 0.953 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.109 0.891 36 H 0.028 0.972 37 H 0.057 0.943 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.096 0.904 41 H 0.394 0.606 42 H 0.277 0.723 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.099 0.901 46 H 0.111 0.889 47 H 0.107 0.893 48 H 0.085 0.915 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.449 16.379 22.487 28.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.087 4.087 3 H 0.137 0.863 4 C 0.313 3.687 5 O -0.461 6.461 6 N -0.352 5.352 7 C -0.023 4.023 8 C -0.153 4.153 9 C -0.036 4.036 10 H 0.083 0.917 11 N -0.248 5.248 12 C -0.119 4.119 13 C -0.076 4.076 14 C 0.231 3.769 15 O -0.496 6.496 16 N -0.213 5.213 17 C -0.461 4.461 18 H 0.099 0.901 19 C -0.215 4.215 20 N -0.564 5.564 21 Si 0.818 3.182 22 H -0.194 1.194 23 H -0.196 1.196 24 H -0.197 1.197 25 C -0.012 4.012 26 C -0.166 4.166 27 C -0.189 4.189 28 C -0.222 4.222 29 H 0.066 0.934 30 H 0.113 0.887 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.127 0.873 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.084 0.916 40 H 0.114 0.886 41 H 0.228 0.772 42 H 0.087 0.913 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.117 0.883 46 H 0.129 0.871 47 H 0.126 0.874 48 H 0.104 0.896 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.143 15.711 22.161 27.851 hybrid contribution 1.390 -1.004 -0.947 1.959 sum -4.753 14.707 21.213 26.247 Atomic orbital electron populations 1.21815 0.90850 1.02821 1.04230 1.20893 0.98709 1.00117 0.88944 0.86342 1.21136 0.78079 0.85325 0.84187 1.90699 1.44449 1.24401 1.86547 1.48548 1.62036 1.19767 1.04844 1.22432 1.00399 0.83172 0.96342 1.22726 0.98875 1.00062 0.93661 1.22751 0.99285 0.95016 0.86570 0.91718 1.61556 1.49792 1.11565 1.01855 1.22442 1.00246 0.91757 0.97464 1.21754 0.94754 0.96536 0.94586 1.20640 0.85097 0.82632 0.88536 1.90453 1.29029 1.63603 1.66498 1.41958 1.25555 1.34385 1.19443 1.19637 1.10589 1.18766 0.97092 0.90053 1.26082 0.95391 0.96837 1.03219 1.69678 1.15951 1.29962 1.40820 0.84970 0.78070 0.77979 0.77204 1.19444 1.19625 1.19724 1.22030 1.00086 0.95881 0.83189 1.22036 0.95437 1.02254 0.96850 1.23181 1.01610 0.97825 0.96240 1.22785 0.93995 1.02142 1.03237 0.93405 0.88716 0.90871 0.88658 0.88588 0.89900 0.87255 0.95310 0.92467 0.88941 0.91552 0.88567 0.77239 0.91342 0.92369 0.92283 0.88288 0.87054 0.87416 0.89596 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.09 71.98 0.65 -0.92 16 2 C -0.07 -0.99 2.27 -11.54 -0.03 -1.02 16 3 H 0.12 1.18 7.73 -2.39 -0.02 1.16 16 4 C 0.52 12.66 6.91 87.66 0.61 13.27 16 5 O -0.58 -19.85 15.63 -3.05 -0.05 -19.90 16 6 N -0.62 -13.28 3.33 -812.22 -2.70 -15.99 16 7 C 0.10 1.23 6.13 86.73 0.53 1.76 16 8 C -0.12 -1.76 5.33 31.78 0.17 -1.59 16 9 C 0.07 1.67 2.70 46.23 0.12 1.80 16 10 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 11 N -0.52 -16.30 4.40 -893.87 -3.93 -20.24 16 12 C 0.03 0.83 9.05 127.69 1.16 1.99 16 13 C 0.05 1.98 5.33 85.56 0.46 2.44 16 14 C 0.44 21.50 7.52 87.66 0.66 22.16 16 15 O -0.61 -33.49 13.88 -3.07 -0.04 -33.53 16 16 N -0.58 -30.40 5.29 -307.00 -1.62 -32.02 16 17 C -0.33 -19.11 9.68 84.04 0.81 -18.30 16 18 H 0.08 4.94 7.16 -2.91 -0.02 4.92 16 19 C -0.02 -0.86 5.50 84.93 0.47 -0.40 16 20 N -0.92 -51.20 13.05 21.66 0.28 -50.91 16 21 Si 0.99 43.68 29.55 68.60 2.03 45.71 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 25 C 0.11 2.99 5.35 86.78 0.46 3.45 16 26 C -0.15 -2.48 4.64 -10.79 -0.05 -2.53 16 27 C -0.15 -1.80 10.18 30.62 0.31 -1.48 16 28 C -0.18 -3.47 9.21 30.62 0.28 -3.19 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.71 5.53 -2.39 -0.01 0.70 16 32 H 0.10 0.85 5.89 -2.39 -0.01 0.84 16 33 H 0.10 0.73 8.12 -2.39 -0.02 0.71 16 34 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.11 1.12 7.98 -2.39 -0.02 1.10 16 36 H 0.03 0.75 8.13 -2.39 -0.02 0.73 16 37 H 0.06 2.19 5.91 -2.39 -0.01 2.17 16 38 H 0.09 2.08 6.94 -2.39 -0.02 2.06 16 39 H 0.07 2.16 8.11 -2.38 -0.02 2.14 16 40 H 0.10 3.33 6.71 -2.39 -0.02 3.31 16 41 H 0.39 20.04 7.90 -92.71 -0.73 19.31 16 42 H 0.28 14.43 8.31 -92.71 -0.77 13.66 16 43 H 0.06 1.76 7.65 -2.39 -0.02 1.74 16 44 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.10 1.81 8.11 -2.39 -0.02 1.79 16 46 H 0.11 0.93 8.05 -2.39 -0.02 0.91 16 47 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 49 H 0.08 1.63 8.14 -2.38 -0.02 1.62 16 Total: -1.00 -75.30 388.70 0.80 -74.51 By element: Atomic # 1 Polarization: 34.72 SS G_CDS: 0.22 Total: 34.93 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: 6.62 Total: 17.44 kcal Atomic # 7 Polarization: -111.18 SS G_CDS: -7.98 Total: -119.15 kcal Atomic # 8 Polarization: -53.34 SS G_CDS: -0.09 Total: -53.43 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -75.30 0.80 -74.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189547059.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.219 kcal (2) G-P(sol) polarization free energy of solvation -75.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds