Wall clock time and date at job start Fri Apr 10 2020 18:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21283 * 119.99816 * 2 1 4 4 N 1.34776 * 120.00255 * 180.02562 * 2 1 3 5 5 C 1.46502 * 119.99592 * 185.47925 * 4 2 1 6 6 C 1.50694 * 110.02162 * 301.27951 * 5 4 2 7 7 O 1.21282 * 120.00181 * 141.91671 * 6 5 4 8 8 N 1.34780 * 119.99824 * 321.64164 * 6 5 4 9 9 C 1.47020 * 125.64916 * 355.42579 * 8 6 5 10 10 C 1.54328 * 107.26730 * 178.84830 * 9 8 6 11 11 C 1.55152 * 103.02383 * 338.13713 * 10 9 8 12 12 H 1.09001 * 111.00416 * 277.24097 * 11 10 9 13 13 N 1.46501 * 111.00883 * 153.38100 * 11 10 9 14 14 C 1.46501 * 119.99960 * 307.80777 * 13 11 10 15 15 C 1.36940 * 119.99721 * 127.80410 * 13 11 10 16 16 H 1.07994 * 119.99803 * 24.39792 * 15 13 11 17 17 C 1.38806 * 119.99638 * 204.39108 * 15 13 11 18 18 N 1.31619 * 120.00139 * 8.15550 * 17 15 13 19 19 Si 1.86801 * 119.99882 * 188.14806 * 17 15 13 20 20 H 1.48504 * 109.46901 * 60.00554 * 19 17 15 21 21 H 1.48503 * 109.47054 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47389 * 300.00357 * 19 17 15 23 23 C 1.47425 * 125.65036 * 175.72874 * 8 6 5 24 24 C 1.54269 * 110.03366 * 62.67409 * 5 4 2 25 25 C 1.54969 * 104.16036 * 95.74928 * 24 5 4 26 26 C 1.54897 * 102.77618 * 37.88906 * 25 24 5 27 27 C 1.53880 * 110.02913 * 179.88846 * 5 4 2 28 28 H 1.09000 * 109.47217 * 269.99507 * 1 2 3 29 29 H 1.09003 * 109.47597 * 30.00259 * 1 2 3 30 30 H 1.09005 * 109.46839 * 149.99863 * 1 2 3 31 31 H 0.96993 * 120.00085 * 5.47988 * 4 2 1 32 32 H 1.09003 * 109.88218 * 298.39248 * 9 8 6 33 33 H 1.09000 * 109.88541 * 59.55116 * 9 8 6 34 34 H 1.09001 * 110.85086 * 219.66887 * 10 9 8 35 35 H 1.09003 * 110.67150 * 96.52402 * 10 9 8 36 36 H 1.08993 * 109.47226 * 95.21153 * 14 13 11 37 37 H 1.08998 * 109.46997 * 215.21534 * 14 13 11 38 38 H 1.09004 * 109.46586 * 335.20726 * 14 13 11 39 39 H 0.97006 * 119.99891 * 179.97438 * 18 17 15 40 40 H 1.09005 * 110.36538 * 322.92929 * 23 8 6 41 41 H 1.08995 * 110.36785 * 85.25159 * 23 8 6 42 42 H 1.09001 * 110.48431 * 214.39518 * 24 5 4 43 43 H 1.09001 * 110.48544 * 337.04132 * 24 5 4 44 44 H 1.09001 * 110.71799 * 279.57595 * 25 24 5 45 45 H 1.08998 * 110.92131 * 156.29188 * 25 24 5 46 46 H 1.08995 * 110.48203 * 203.40216 * 26 25 24 47 47 H 1.08999 * 110.59510 * 80.81837 * 26 25 24 48 48 H 1.09006 * 110.03232 * 359.95009 * 27 5 4 49 49 H 1.08999 * 110.03445 * 121.33026 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6409 -1.1699 0.1206 6 6 4.2536 -0.3783 -1.0058 7 8 5.2256 0.3171 -0.7997 8 7 3.7247 -0.4475 -2.2436 9 6 2.6170 -1.3225 -2.6544 10 6 2.3372 -1.0380 -4.1452 11 6 2.9325 0.3803 -4.3482 12 1 2.2276 1.1489 -4.0311 13 7 3.3382 0.5852 -5.7410 14 6 4.2177 -0.3849 -6.3980 15 6 2.8953 1.6835 -6.4286 16 1 2.5981 2.5725 -5.8924 17 6 2.8286 1.6540 -7.8147 18 7 3.0355 0.5255 -8.4597 19 14 2.4450 3.2160 -8.7648 20 1 3.4835 4.2378 -8.4773 21 1 2.4311 2.9195 -10.2198 22 1 1.1151 3.7321 -8.3525 23 6 4.1654 0.3371 -3.4113 24 6 4.0597 -0.5685 1.4781 25 6 4.2534 -1.8021 2.3958 26 6 4.8912 -2.8422 1.4414 27 6 4.1689 -2.6151 0.0974 28 1 -0.3634 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6993 -2.0052 -0.0811 32 1 2.9002 -2.3666 -2.5210 33 1 1.7290 -1.0988 -2.0632 34 1 1.2659 -1.0390 -4.3460 35 1 2.8472 -1.7645 -4.7779 36 1 3.6153 -1.1023 -6.9551 37 1 4.8870 0.1366 -7.0822 38 1 4.8052 -0.9106 -5.6452 39 1 2.9886 0.5048 -9.4284 40 1 4.4460 1.3455 -3.1068 41 1 5.0012 -0.1568 -3.9067 42 1 4.9944 -0.0166 1.3787 43 1 3.2734 0.0781 1.8677 44 1 3.2938 -2.1587 2.7702 45 1 4.9269 -1.5713 3.2211 46 1 4.7115 -3.8539 1.8050 47 1 5.9606 -2.6602 1.3354 48 1 3.3388 -3.3144 -0.0032 49 1 4.8676 -2.7441 -0.7293 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192818233.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:01 Heat of formation + Delta-G solvation = -37.346969 kcal Electronic energy + Delta-G solvation = -29742.801015 eV Core-core repulsion = 25898.787030 eV Total energy + Delta-G solvation = -3844.013985 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.13712 -38.88409 -37.99227 -36.78609 -34.85667 -33.81608 -31.59945 -30.45131 -29.64747 -29.08784 -28.04931 -27.37053 -26.03287 -23.87060 -22.37685 -21.70174 -21.16800 -20.29533 -19.26803 -18.95580 -17.31431 -17.01610 -16.94109 -15.99807 -15.85972 -15.84295 -15.04250 -14.86263 -14.47658 -13.94839 -13.79727 -13.58972 -13.34577 -13.28749 -12.98432 -12.73691 -12.54252 -12.40928 -12.31666 -12.13365 -11.94422 -11.69629 -11.47020 -11.43173 -11.30321 -11.19856 -10.89391 -10.82638 -10.78864 -10.46359 -10.45639 -10.25421 -10.04129 -9.89860 -9.85635 -9.83177 -8.92114 -8.56965 -8.21668 -6.77473 -5.74598 -3.23811 2.52428 2.70047 3.09312 3.30907 3.39206 3.43858 3.46192 4.25323 4.28513 4.47386 4.55230 4.66279 4.86671 5.02351 5.05841 5.11945 5.17577 5.19484 5.25386 5.30290 5.36849 5.40040 5.50694 5.54313 5.61132 5.62334 5.68267 5.76164 5.78398 5.84232 5.94457 5.99457 6.05884 6.18562 6.31758 6.35899 6.41338 6.59924 6.69490 6.79622 6.91913 7.29106 7.38283 7.72037 7.79881 7.89583 8.10539 8.37321 8.46039 9.21498 9.82547 10.31725 11.29634 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.020783 B = 0.003449 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.909466 B = 8116.047223 C = 8567.542568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.507 3.493 3 O -0.522 6.522 4 N -0.723 5.723 5 C 0.161 3.839 6 C 0.538 3.462 7 O -0.539 6.539 8 N -0.604 5.604 9 C 0.104 3.896 10 C -0.152 4.152 11 C 0.176 3.824 12 H 0.076 0.924 13 N -0.586 5.586 14 C 0.162 3.838 15 C -0.259 4.259 16 H 0.068 0.932 17 C 0.006 3.994 18 N -0.908 5.908 19 Si 0.908 3.092 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.087 3.913 24 C -0.116 4.116 25 C -0.122 4.122 26 C -0.121 4.121 27 C -0.118 4.118 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.402 0.598 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.033 0.967 37 H 0.044 0.956 38 H -0.002 1.002 39 H 0.253 0.747 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.094 0.906 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.080 0.920 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.069 -11.473 20.121 23.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.294 3.706 3 O -0.396 6.396 4 N -0.380 5.380 5 C 0.072 3.928 6 C 0.324 3.676 7 O -0.416 6.416 8 N -0.337 5.337 9 C -0.020 4.020 10 C -0.192 4.192 11 C 0.065 3.935 12 H 0.094 0.906 13 N -0.306 5.306 14 C 0.018 3.982 15 C -0.389 4.389 16 H 0.086 0.914 17 C -0.192 4.192 18 N -0.553 5.553 19 Si 0.738 3.262 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.209 1.209 23 C -0.037 4.037 24 C -0.155 4.155 25 C -0.160 4.160 26 C -0.159 4.159 27 C -0.156 4.156 28 H 0.111 0.889 29 H 0.114 0.886 30 H 0.099 0.901 31 H 0.238 0.762 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.017 0.983 39 H 0.063 0.937 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.113 0.887 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.091 0.909 48 H 0.099 0.901 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.070 -10.327 20.060 22.771 hybrid contribution -0.593 0.252 -0.796 1.024 sum -3.663 -10.076 19.265 22.047 Atomic orbital electron populations 1.21904 0.91409 1.05246 1.04608 1.20855 0.90698 0.83566 0.75509 1.90819 1.70391 1.31093 1.47308 1.46429 1.06097 1.09287 1.76151 1.21145 0.80344 0.96380 0.94966 1.20040 0.83469 0.81893 0.82200 1.90659 1.27104 1.41271 1.82562 1.48293 1.34929 1.41483 1.08989 1.22191 0.89627 0.93231 0.96985 1.23217 1.01974 1.01179 0.92834 1.21375 0.92311 0.94064 0.85718 0.90579 1.43788 1.53930 1.25989 1.06910 1.20811 0.92222 0.92179 0.92978 1.19198 1.39475 0.91129 0.89059 0.91375 1.25069 1.00267 0.96882 0.97030 1.70045 1.53899 1.24051 1.07290 0.86288 0.78439 0.82699 0.78820 1.20952 1.21596 1.20871 1.22988 0.99803 0.95571 0.85374 1.22652 1.03706 0.97616 0.91511 1.22523 1.00632 0.95156 0.97683 1.22349 1.00302 0.99330 0.93919 1.22369 1.00918 0.92672 0.99678 0.88927 0.88623 0.90113 0.76242 0.92548 0.91976 0.90719 0.90605 0.94892 0.93775 0.98339 0.93650 0.91225 0.91651 0.88713 0.90654 0.91532 0.91056 0.91033 0.90921 0.90148 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 10.31 36.00 0.37 -0.94 16 2 C 0.51 6.03 5.55 -10.99 -0.06 5.97 16 3 O -0.52 -9.10 15.00 5.55 0.08 -9.02 16 4 N -0.72 -6.94 2.92 -47.64 -0.14 -7.08 16 5 C 0.16 1.94 0.56 -131.85 -0.07 1.87 16 6 C 0.54 9.27 4.98 -10.99 -0.05 9.22 16 7 O -0.54 -11.45 15.80 5.56 0.09 -11.36 16 8 N -0.60 -10.30 3.26 -170.52 -0.56 -10.86 16 9 C 0.10 1.42 5.85 -3.06 -0.02 1.40 16 10 C -0.15 -2.56 6.50 -24.90 -0.16 -2.72 16 11 C 0.18 3.66 3.54 -65.78 -0.23 3.43 16 12 H 0.08 1.66 7.96 -51.93 -0.41 1.24 16 13 N -0.59 -14.61 2.96 -171.04 -0.51 -15.12 16 14 C 0.16 3.96 7.54 59.85 0.45 4.41 16 15 C -0.26 -7.14 9.61 -15.06 -0.14 -7.29 16 16 H 0.07 1.86 7.84 -52.49 -0.41 1.44 16 17 C 0.01 0.16 5.19 -17.43 -0.09 0.07 16 18 N -0.91 -26.10 10.54 55.49 0.58 -25.52 16 19 Si 0.91 21.92 29.56 -169.99 -5.03 16.90 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 C 0.09 1.75 6.45 -2.53 -0.02 1.73 16 24 C -0.12 -1.42 5.57 -25.03 -0.14 -1.56 16 25 C -0.12 -1.02 6.91 -24.69 -0.17 -1.19 16 26 C -0.12 -0.95 6.83 -25.07 -0.17 -1.12 16 27 C -0.12 -1.06 6.24 -25.61 -0.16 -1.22 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.40 2.39 7.99 -40.82 -0.33 2.06 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.74 5.15 -51.93 -0.27 0.47 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.08 1.34 6.99 -51.93 -0.36 0.98 16 36 H 0.03 0.85 7.33 -51.93 -0.38 0.47 16 37 H 0.04 1.17 7.31 -51.93 -0.38 0.79 16 38 H 0.00 -0.04 6.38 -51.93 -0.33 -0.37 16 39 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.07 1.55 8.08 -51.93 -0.42 1.13 16 41 H 0.07 1.36 6.43 -51.93 -0.33 1.03 16 42 H 0.09 1.41 6.78 -51.93 -0.35 1.05 16 43 H 0.07 0.99 6.73 -51.93 -0.35 0.64 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.08 0.50 7.44 -51.93 -0.39 0.12 16 49 H 0.08 0.82 7.67 -51.93 -0.40 0.42 16 LS Contribution 374.63 15.07 5.65 5.65 Total: -1.00 -35.05 374.63 -8.55 -43.60 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -8.05 Total: 0.74 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: -0.67 Total: 12.07 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: -0.62 Total: -58.58 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: 0.17 Total: -20.38 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.05 -8.55 -43.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192818233.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.251 kcal (2) G-P(sol) polarization free energy of solvation -35.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds