Wall clock time and date at job start Fri Apr 10 2020 18:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21283 * 119.99816 * 2 1 4 4 N 1.34776 * 120.00255 * 180.02562 * 2 1 3 5 5 C 1.46502 * 119.99592 * 185.47925 * 4 2 1 6 6 C 1.50694 * 110.02162 * 301.27951 * 5 4 2 7 7 O 1.21282 * 120.00181 * 141.91671 * 6 5 4 8 8 N 1.34780 * 119.99824 * 321.64164 * 6 5 4 9 9 C 1.47020 * 125.64916 * 355.42579 * 8 6 5 10 10 C 1.54328 * 107.26730 * 178.84830 * 9 8 6 11 11 C 1.55152 * 103.02383 * 338.13713 * 10 9 8 12 12 H 1.09001 * 111.00416 * 277.24097 * 11 10 9 13 13 N 1.46501 * 111.00883 * 153.38100 * 11 10 9 14 14 C 1.46501 * 119.99960 * 307.80777 * 13 11 10 15 15 C 1.36940 * 119.99721 * 127.80410 * 13 11 10 16 16 H 1.07994 * 119.99803 * 24.39792 * 15 13 11 17 17 C 1.38806 * 119.99638 * 204.39108 * 15 13 11 18 18 N 1.31619 * 120.00139 * 8.15550 * 17 15 13 19 19 Si 1.86801 * 119.99882 * 188.14806 * 17 15 13 20 20 H 1.48504 * 109.46901 * 60.00554 * 19 17 15 21 21 H 1.48503 * 109.47054 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47389 * 300.00357 * 19 17 15 23 23 C 1.47425 * 125.65036 * 175.72874 * 8 6 5 24 24 C 1.54269 * 110.03366 * 62.67409 * 5 4 2 25 25 C 1.54969 * 104.16036 * 95.74928 * 24 5 4 26 26 C 1.54897 * 102.77618 * 37.88906 * 25 24 5 27 27 C 1.53880 * 110.02913 * 179.88846 * 5 4 2 28 28 H 1.09000 * 109.47217 * 269.99507 * 1 2 3 29 29 H 1.09003 * 109.47597 * 30.00259 * 1 2 3 30 30 H 1.09005 * 109.46839 * 149.99863 * 1 2 3 31 31 H 0.96993 * 120.00085 * 5.47988 * 4 2 1 32 32 H 1.09003 * 109.88218 * 298.39248 * 9 8 6 33 33 H 1.09000 * 109.88541 * 59.55116 * 9 8 6 34 34 H 1.09001 * 110.85086 * 219.66887 * 10 9 8 35 35 H 1.09003 * 110.67150 * 96.52402 * 10 9 8 36 36 H 1.08993 * 109.47226 * 95.21153 * 14 13 11 37 37 H 1.08998 * 109.46997 * 215.21534 * 14 13 11 38 38 H 1.09004 * 109.46586 * 335.20726 * 14 13 11 39 39 H 0.97006 * 119.99891 * 179.97438 * 18 17 15 40 40 H 1.09005 * 110.36538 * 322.92929 * 23 8 6 41 41 H 1.08995 * 110.36785 * 85.25159 * 23 8 6 42 42 H 1.09001 * 110.48431 * 214.39518 * 24 5 4 43 43 H 1.09001 * 110.48544 * 337.04132 * 24 5 4 44 44 H 1.09001 * 110.71799 * 279.57595 * 25 24 5 45 45 H 1.08998 * 110.92131 * 156.29188 * 25 24 5 46 46 H 1.08995 * 110.48203 * 203.40216 * 26 25 24 47 47 H 1.08999 * 110.59510 * 80.81837 * 26 25 24 48 48 H 1.09006 * 110.03232 * 359.95009 * 27 5 4 49 49 H 1.08999 * 110.03445 * 121.33026 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6409 -1.1699 0.1206 6 6 4.2536 -0.3783 -1.0058 7 8 5.2256 0.3171 -0.7997 8 7 3.7247 -0.4475 -2.2436 9 6 2.6170 -1.3225 -2.6544 10 6 2.3372 -1.0380 -4.1452 11 6 2.9325 0.3803 -4.3482 12 1 2.2276 1.1489 -4.0311 13 7 3.3382 0.5852 -5.7410 14 6 4.2177 -0.3849 -6.3980 15 6 2.8953 1.6835 -6.4286 16 1 2.5981 2.5725 -5.8924 17 6 2.8286 1.6540 -7.8147 18 7 3.0355 0.5255 -8.4597 19 14 2.4450 3.2160 -8.7648 20 1 3.4835 4.2378 -8.4773 21 1 2.4311 2.9195 -10.2198 22 1 1.1151 3.7321 -8.3525 23 6 4.1654 0.3371 -3.4113 24 6 4.0597 -0.5685 1.4781 25 6 4.2534 -1.8021 2.3958 26 6 4.8912 -2.8422 1.4414 27 6 4.1689 -2.6151 0.0974 28 1 -0.3634 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6993 -2.0052 -0.0811 32 1 2.9002 -2.3666 -2.5210 33 1 1.7290 -1.0988 -2.0632 34 1 1.2659 -1.0390 -4.3460 35 1 2.8472 -1.7645 -4.7779 36 1 3.6153 -1.1023 -6.9551 37 1 4.8870 0.1366 -7.0822 38 1 4.8052 -0.9106 -5.6452 39 1 2.9886 0.5048 -9.4284 40 1 4.4460 1.3455 -3.1068 41 1 5.0012 -0.1568 -3.9067 42 1 4.9944 -0.0166 1.3787 43 1 3.2734 0.0781 1.8677 44 1 3.2938 -2.1587 2.7702 45 1 4.9269 -1.5713 3.2211 46 1 4.7115 -3.8539 1.8050 47 1 5.9606 -2.6602 1.3354 48 1 3.3388 -3.3144 -0.0032 49 1 4.8676 -2.7441 -0.7293 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192818233.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:00 Heat of formation + Delta-G solvation = -61.943026 kcal Electronic energy + Delta-G solvation = -29743.867580 eV Core-core repulsion = 25898.787030 eV Total energy + Delta-G solvation = -3845.080550 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.23227 -40.15066 -39.26064 -38.02682 -36.63677 -34.81226 -33.43455 -31.60233 -30.88460 -29.95758 -29.39844 -28.37684 -28.08731 -25.47092 -23.99841 -22.53789 -22.22749 -21.16320 -20.97846 -20.09175 -18.99698 -18.47837 -17.84325 -17.55995 -17.09597 -16.80698 -16.48925 -15.91268 -15.89824 -15.36388 -15.14208 -14.84685 -14.78111 -14.45061 -14.31285 -14.22081 -13.86774 -13.60951 -13.45396 -13.18220 -13.01201 -12.92600 -12.79869 -12.68121 -12.51735 -12.43271 -12.33724 -12.19185 -12.16770 -12.12108 -11.93960 -11.88919 -11.55099 -11.50634 -11.20099 -10.89957 -10.68328 -10.05784 -9.62803 -8.81059 -7.86842 -5.38354 1.44159 1.46580 1.47032 1.53542 1.62717 1.92748 2.23531 2.48150 3.23890 3.34307 3.43867 3.50877 3.63242 3.87224 3.93554 3.96884 4.12899 4.20722 4.25206 4.34804 4.39373 4.41965 4.47946 4.54234 4.60018 4.68967 4.70671 4.72984 4.77029 4.83749 4.92283 4.95157 5.05247 5.12053 5.16423 5.17718 5.20104 5.22681 5.26023 5.38299 5.43787 5.47586 5.59325 5.69199 6.28610 6.49831 6.59944 7.08603 7.11743 7.28653 7.79540 8.23900 9.15331 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.020783 B = 0.003449 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.909466 B = 8116.047223 C = 8567.542568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.499 3.501 3 O -0.587 6.587 4 N -0.703 5.703 5 C 0.168 3.832 6 C 0.526 3.474 7 O -0.593 6.593 8 N -0.606 5.606 9 C 0.108 3.892 10 C -0.139 4.139 11 C 0.171 3.829 12 H 0.061 0.939 13 N -0.602 5.602 14 C 0.182 3.818 15 C -0.275 4.275 16 H 0.062 0.938 17 C -0.041 4.041 18 N -0.932 5.932 19 Si 0.969 3.031 20 H -0.284 1.284 21 H -0.288 1.288 22 H -0.274 1.274 23 C 0.097 3.903 24 C -0.119 4.119 25 C -0.111 4.111 26 C -0.118 4.118 27 C -0.114 4.114 28 H 0.116 0.884 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.426 0.574 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.017 0.983 37 H 0.012 0.988 38 H 0.024 0.976 39 H 0.251 0.749 40 H 0.033 0.967 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.092 0.908 45 H 0.075 0.925 46 H 0.105 0.895 47 H 0.057 0.943 48 H 0.124 0.876 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.428 -14.600 21.857 27.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.289 3.711 3 O -0.466 6.466 4 N -0.361 5.361 5 C 0.077 3.923 6 C 0.315 3.685 7 O -0.473 6.473 8 N -0.338 5.338 9 C -0.014 4.014 10 C -0.179 4.179 11 C 0.062 3.938 12 H 0.079 0.921 13 N -0.323 5.323 14 C 0.037 3.963 15 C -0.405 4.405 16 H 0.080 0.920 17 C -0.237 4.237 18 N -0.577 5.577 19 Si 0.797 3.203 20 H -0.210 1.210 21 H -0.214 1.214 22 H -0.199 1.199 23 C -0.028 4.028 24 C -0.158 4.158 25 C -0.148 4.148 26 C -0.155 4.155 27 C -0.152 4.152 28 H 0.135 0.865 29 H 0.099 0.901 30 H 0.135 0.865 31 H 0.267 0.733 32 H 0.115 0.885 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.036 0.964 37 H 0.031 0.969 38 H 0.042 0.958 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.111 0.889 45 H 0.094 0.906 46 H 0.124 0.876 47 H 0.076 0.924 48 H 0.142 0.858 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.485 -13.532 21.832 26.264 hybrid contribution 0.189 1.299 -1.272 1.827 sum -5.296 -12.233 20.560 24.503 Atomic orbital electron populations 1.21939 0.87610 1.06311 1.06505 1.21748 0.92495 0.82972 0.73898 1.90814 1.71954 1.33575 1.50297 1.46276 1.04951 1.10027 1.74868 1.21075 0.81553 0.97549 0.92088 1.21176 0.82833 0.81485 0.82976 1.90626 1.29683 1.43636 1.83389 1.48399 1.35683 1.41461 1.08289 1.22402 0.89497 0.94616 0.94868 1.23055 1.02329 0.97453 0.95014 1.21420 0.92380 0.96458 0.83557 0.92114 1.43923 1.54531 1.25665 1.08217 1.20505 0.91491 0.91375 0.92882 1.19440 1.39310 0.92009 0.89730 0.92000 1.25758 1.00542 0.99696 0.97727 1.70185 1.54778 1.25601 1.07160 0.85327 0.78361 0.79274 0.77352 1.21032 1.21423 1.19941 1.22594 0.99278 0.94285 0.86674 1.22601 1.01229 0.99067 0.92902 1.22504 1.02201 0.93047 0.97040 1.22366 0.99251 1.00832 0.93068 1.22459 1.02157 0.90732 0.99895 0.86537 0.90079 0.86463 0.73319 0.88507 0.89433 0.89389 0.91097 0.96439 0.96872 0.95813 0.93988 0.94820 0.92623 0.92622 0.92156 0.88945 0.90595 0.87638 0.92446 0.85812 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 10.31 71.23 0.73 -1.19 16 2 C 0.50 10.90 5.55 87.66 0.49 11.38 16 3 O -0.59 -20.90 15.00 -3.04 -0.05 -20.95 16 4 N -0.70 -11.05 2.92 -423.02 -1.23 -12.28 16 5 C 0.17 3.75 0.56 3.58 0.00 3.76 16 6 C 0.53 18.43 4.98 87.65 0.44 18.86 16 7 O -0.59 -26.88 15.80 -3.03 -0.05 -26.93 16 8 N -0.61 -20.54 3.26 -811.78 -2.65 -23.19 16 9 C 0.11 2.64 5.85 86.73 0.51 3.14 16 10 C -0.14 -4.41 6.50 31.78 0.21 -4.20 16 11 C 0.17 7.24 3.54 46.38 0.16 7.41 16 12 H 0.06 2.73 7.96 -2.39 -0.02 2.71 16 13 N -0.60 -30.80 2.96 -695.03 -2.06 -32.86 16 14 C 0.18 9.07 7.54 127.77 0.96 10.03 16 15 C -0.27 -15.55 9.61 84.03 0.81 -14.74 16 16 H 0.06 3.49 7.84 -2.91 -0.02 3.47 16 17 C -0.04 -2.33 5.19 84.86 0.44 -1.89 16 18 N -0.93 -54.43 10.54 21.65 0.23 -54.20 16 19 Si 0.97 45.69 29.56 68.60 2.03 47.72 16 20 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 21 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 22 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 23 C 0.10 4.08 6.45 86.86 0.56 4.64 16 24 C -0.12 -2.88 5.57 31.70 0.18 -2.71 16 25 C -0.11 -1.53 6.91 31.92 0.22 -1.31 16 26 C -0.12 -1.42 6.83 31.67 0.22 -1.21 16 27 C -0.11 -1.62 6.24 31.32 0.20 -1.42 16 28 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.12 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.43 2.51 7.99 -92.71 -0.74 1.76 16 32 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.09 1.72 5.15 -2.39 -0.01 1.70 16 34 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.07 2.36 6.99 -2.39 -0.02 2.35 16 36 H 0.02 0.92 7.33 -2.39 -0.02 0.90 16 37 H 0.01 0.70 7.31 -2.39 -0.02 0.68 16 38 H 0.02 1.03 6.38 -2.39 -0.02 1.02 16 39 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 40 H 0.03 1.61 8.08 -2.38 -0.02 1.59 16 41 H 0.06 2.41 6.43 -2.39 -0.02 2.39 16 42 H 0.06 1.78 6.78 -2.39 -0.02 1.76 16 43 H 0.06 1.61 6.73 -2.39 -0.02 1.59 16 44 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.12 0.70 7.44 -2.38 -0.02 0.68 16 49 H 0.06 1.16 7.67 -2.39 -0.02 1.14 16 Total: -1.00 -84.42 374.63 2.55 -81.86 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.21 Total: 10.26 kcal Atomic # 6 Polarization: 24.45 SS G_CDS: 6.12 Total: 30.57 kcal Atomic # 7 Polarization: -116.83 SS G_CDS: -5.71 Total: -122.54 kcal Atomic # 8 Polarization: -47.78 SS G_CDS: -0.09 Total: -47.87 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -84.42 2.55 -81.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192818233.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.920 kcal (2) G-P(sol) polarization free energy of solvation -84.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds