Wall clock time and date at job start Fri Apr 10 2020 18:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21283 * 120.00049 * 2 1 4 4 N 1.34774 * 120.00148 * 180.02562 * 2 1 3 5 5 C 1.46498 * 120.00223 * 185.24061 * 4 2 1 6 6 C 1.52998 * 109.47014 * 63.60782 * 5 4 2 7 7 C 1.50705 * 109.47087 * 303.60885 * 5 4 2 8 8 O 1.21284 * 119.99745 * 141.23026 * 7 5 4 9 9 N 1.34771 * 119.99986 * 321.23440 * 7 5 4 10 10 C 1.47022 * 125.64960 * 355.36040 * 9 7 5 11 11 C 1.54326 * 107.27059 * 178.98913 * 10 9 7 12 12 C 1.55150 * 102.94277 * 337.80627 * 11 10 9 13 13 H 1.09000 * 111.00810 * 277.38806 * 12 11 10 14 14 N 1.46502 * 111.00205 * 153.57576 * 12 11 10 15 15 C 1.46499 * 120.00105 * 301.45534 * 14 12 11 16 16 C 1.36935 * 120.00072 * 121.45620 * 14 12 11 17 17 H 1.07999 * 120.00171 * 327.96071 * 16 14 12 18 18 C 1.38814 * 120.00246 * 148.23663 * 16 14 12 19 19 N 1.31621 * 119.99677 * 2.81797 * 18 16 14 20 20 Si 1.86802 * 120.00117 * 182.82577 * 18 16 14 21 21 H 1.48500 * 109.47276 * 59.99872 * 20 18 16 22 22 H 1.48503 * 109.47068 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47049 * 299.99543 * 20 18 16 24 24 C 1.47431 * 125.64838 * 175.42055 * 9 7 5 25 25 C 1.53002 * 109.47277 * 183.60915 * 5 4 2 26 26 C 1.53001 * 117.49536 * 13.40332 * 25 5 4 27 27 C 1.52993 * 117.49755 * 304.77874 * 25 5 4 28 28 H 1.08999 * 109.47010 * 269.99503 * 1 2 3 29 29 H 1.08996 * 109.47260 * 29.99578 * 1 2 3 30 30 H 1.09003 * 109.47122 * 150.00193 * 1 2 3 31 31 H 0.96998 * 120.00139 * 5.24342 * 4 2 1 32 32 H 1.08996 * 109.47285 * 300.00306 * 6 5 4 33 33 H 1.08996 * 109.46994 * 60.00322 * 6 5 4 34 34 H 1.09003 * 109.47316 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.87786 * 59.57242 * 10 9 7 36 36 H 1.08993 * 109.88316 * 298.40917 * 10 9 7 37 37 H 1.09003 * 110.71966 * 219.44393 * 11 10 9 38 38 H 1.08996 * 110.72146 * 96.17297 * 11 10 9 39 39 H 1.09002 * 109.47187 * 274.07849 * 15 14 12 40 40 H 1.09004 * 109.47348 * 34.07788 * 15 14 12 41 41 H 1.09001 * 109.47452 * 154.07926 * 15 14 12 42 42 H 0.97001 * 119.99771 * 179.97438 * 19 18 16 43 43 H 1.08991 * 110.36831 * 85.24316 * 24 9 7 44 44 H 1.09000 * 110.36522 * 322.91483 * 24 9 7 45 45 H 1.09002 * 115.54918 * 159.10883 * 25 5 4 46 46 H 1.08998 * 117.50287 * 359.97438 * 26 25 5 47 47 H 1.09007 * 117.49323 * 145.02419 * 26 25 5 48 48 H 1.09001 * 117.49813 * 214.97888 * 27 25 5 49 49 H 1.08997 * 117.50052 * 0.02562 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6413 -1.1699 0.1154 6 6 4.0463 -0.5899 1.4720 7 6 4.2343 -0.3306 -0.9870 8 8 5.1950 0.3746 -0.7623 9 7 3.6968 -0.3637 -2.2225 10 6 2.5990 -1.2401 -2.6562 11 6 2.3057 -0.9097 -4.1349 12 6 2.8724 0.5264 -4.2889 13 1 2.1553 1.2691 -3.9390 14 7 3.2631 0.7907 -5.6760 15 6 4.2623 -0.0579 -6.3299 16 6 2.6942 1.8309 -6.3612 17 1 1.6753 2.1219 -6.1527 18 6 3.4253 2.5077 -7.3278 19 7 4.6458 2.1146 -7.6249 20 14 2.6771 3.9764 -8.2067 21 1 2.3366 5.0268 -7.2137 22 1 3.6539 4.5179 -9.1855 23 1 1.4459 3.5518 -8.9202 24 6 4.1133 0.4721 -3.3633 25 6 4.1595 -2.6048 -0.0011 26 6 3.1857 -3.6681 -0.5129 27 6 3.5851 -3.6438 0.9639 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6990 -2.0054 -0.0777 32 1 3.6771 0.4323 1.5550 33 1 3.6175 -1.1969 2.2692 34 1 5.1329 -0.5923 1.5584 35 1 1.7124 -1.0507 -2.0511 36 1 2.8986 -2.2838 -2.5620 37 1 1.2330 -0.9237 -4.3277 38 1 2.8265 -1.6027 -4.7955 39 1 5.2608 0.3155 -6.1025 40 1 4.1651 -1.0805 -5.9654 41 1 4.1046 -0.0399 -7.4083 42 1 5.1566 2.5873 -8.3006 43 1 4.9543 0.0130 -3.8829 44 1 4.3772 1.4736 -3.0235 45 1 5.2078 -2.7046 -0.2826 46 1 2.1759 -3.3456 -0.7663 47 1 3.5934 -4.4678 -1.1314 48 1 4.2554 -4.4274 1.3170 49 1 2.8377 -3.3053 1.6814 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193423489.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:07 Heat of formation + Delta-G solvation = 3.620746 kcal Electronic energy + Delta-G solvation = -29969.291349 eV Core-core repulsion = 26127.053857 eV Total energy + Delta-G solvation = -3842.237492 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.22265 -38.81872 -38.02775 -37.17470 -34.74623 -34.08020 -31.63485 -31.46146 -29.66838 -29.02976 -27.95124 -26.01909 -25.23844 -23.38816 -22.82854 -22.20994 -21.30832 -20.75370 -19.22480 -18.86672 -17.58794 -17.13325 -16.99501 -15.80564 -15.65930 -15.52298 -15.14403 -14.77330 -14.62732 -14.20981 -13.73422 -13.42822 -13.29570 -13.08011 -12.82816 -12.76168 -12.70380 -12.36901 -12.36421 -12.07847 -11.95831 -11.90557 -11.79409 -11.62915 -11.39962 -10.88640 -10.84329 -10.76537 -10.54346 -10.43688 -10.37976 -10.27389 -9.98001 -9.89760 -9.84631 -9.79067 -8.91485 -8.50225 -8.13106 -6.65817 -5.79068 -3.30548 2.52484 2.70559 3.09861 3.27341 3.38927 3.44257 3.44752 3.46337 4.27637 4.41980 4.47451 4.48831 4.60254 4.78357 4.94220 5.01408 5.07247 5.13134 5.20973 5.24010 5.34208 5.35837 5.45086 5.50933 5.57509 5.63418 5.69044 5.70603 5.74329 5.79504 5.89188 5.96584 6.10205 6.21202 6.25258 6.36471 6.45373 6.65693 6.74056 6.88303 6.96507 7.27048 7.39402 7.73652 7.80170 7.96940 8.09895 8.43612 8.53127 9.22969 9.81544 10.35432 11.27168 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.018663 B = 0.003700 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.967307 B = 7566.453043 C = 7927.152003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.507 3.493 3 O -0.518 6.518 4 N -0.730 5.730 5 C 0.196 3.804 6 C -0.141 4.141 7 C 0.539 3.461 8 O -0.539 6.539 9 N -0.601 5.601 10 C 0.103 3.897 11 C -0.156 4.156 12 C 0.175 3.825 13 H 0.075 0.925 14 N -0.584 5.584 15 C 0.161 3.839 16 C -0.265 4.265 17 H 0.066 0.934 18 C 0.014 3.986 19 N -0.902 5.902 20 Si 0.905 3.095 21 H -0.281 1.281 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.091 3.909 25 C -0.154 4.154 26 C -0.178 4.178 27 C -0.167 4.167 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.400 0.600 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.018 0.982 40 H -0.007 1.007 41 H 0.060 0.940 42 H 0.255 0.745 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.122 0.878 46 H 0.098 0.902 47 H 0.104 0.896 48 H 0.101 0.899 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.943 -15.206 17.217 24.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.294 3.706 3 O -0.392 6.392 4 N -0.389 5.389 5 C 0.106 3.894 6 C -0.199 4.199 7 C 0.326 3.674 8 O -0.415 6.415 9 N -0.334 5.334 10 C -0.021 4.021 11 C -0.196 4.196 12 C 0.064 3.936 13 H 0.094 0.906 14 N -0.305 5.305 15 C 0.017 3.983 16 C -0.395 4.395 17 H 0.084 0.916 18 C -0.186 4.186 19 N -0.545 5.545 20 Si 0.734 3.266 21 H -0.207 1.207 22 H -0.215 1.215 23 H -0.209 1.209 24 C -0.034 4.034 25 C -0.173 4.173 26 C -0.215 4.215 27 C -0.204 4.204 28 H 0.111 0.889 29 H 0.115 0.885 30 H 0.098 0.902 31 H 0.239 0.761 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.036 0.964 40 H 0.012 0.988 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.140 0.860 46 H 0.116 0.884 47 H 0.123 0.877 48 H 0.119 0.881 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.818 -13.952 17.234 23.198 hybrid contribution -0.508 0.324 -0.611 0.858 sum -7.327 -13.628 16.623 22.709 Atomic orbital electron populations 1.21905 0.91367 1.05217 1.04659 1.20852 0.90714 0.83522 0.75529 1.90819 1.70250 1.31066 1.47084 1.46596 1.06367 1.09443 1.76526 1.19932 0.80130 0.93812 0.95514 1.21916 1.02955 1.02124 0.92905 1.19928 0.83245 0.82349 0.81926 1.90684 1.27521 1.41657 1.81683 1.48293 1.35594 1.39548 1.10004 1.22235 0.89799 0.93661 0.96383 1.23218 1.01540 1.01380 0.93486 1.21460 0.93193 0.93307 0.85610 0.90638 1.43743 1.47592 1.33351 1.05795 1.20818 0.91609 0.88304 0.97557 1.19107 0.95152 1.08025 1.17197 0.91603 1.25307 0.95280 0.97801 1.00202 1.70021 1.10145 1.40665 1.33696 0.86349 0.78098 0.83124 0.79027 1.20734 1.21542 1.20884 1.22991 0.99940 0.94709 0.85716 1.22370 1.00144 0.88424 1.06383 1.23100 0.99776 1.01210 0.97427 1.23024 1.03632 1.01000 0.92759 0.88869 0.88512 0.90229 0.76060 0.90659 0.92011 0.90542 0.92276 0.92124 0.90957 0.90574 0.96398 0.98827 0.92127 0.93447 0.91647 0.91205 0.86035 0.88441 0.87730 0.88084 0.88373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 10.31 36.01 0.37 -0.94 16 2 C 0.51 6.14 5.67 -10.99 -0.06 6.08 16 3 O -0.52 -9.19 14.46 5.56 0.08 -9.11 16 4 N -0.73 -7.21 2.66 -48.68 -0.13 -7.34 16 5 C 0.20 2.43 0.49 -132.97 -0.07 2.36 16 6 C -0.14 -1.77 7.83 37.16 0.29 -1.47 16 7 C 0.54 9.64 5.00 -10.99 -0.05 9.59 16 8 O -0.54 -11.94 16.34 5.55 0.09 -11.85 16 9 N -0.60 -10.60 3.21 -170.52 -0.55 -11.15 16 10 C 0.10 1.42 5.61 -3.06 -0.02 1.40 16 11 C -0.16 -2.54 6.52 -24.90 -0.16 -2.70 16 12 C 0.17 3.68 3.55 -65.78 -0.23 3.45 16 13 H 0.08 1.66 7.96 -51.93 -0.41 1.25 16 14 N -0.58 -14.64 2.95 -171.03 -0.50 -15.15 16 15 C 0.16 3.96 7.75 59.85 0.46 4.43 16 16 C -0.27 -7.29 9.53 -15.06 -0.14 -7.43 16 17 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 18 C 0.01 0.38 5.31 -17.43 -0.09 0.29 16 19 N -0.90 -26.30 10.58 55.49 0.59 -25.72 16 20 Si 0.90 21.87 29.55 -169.99 -5.02 16.85 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C 0.09 1.92 6.45 -2.52 -0.02 1.91 16 25 C -0.15 -1.45 4.97 -90.62 -0.45 -1.90 16 26 C -0.18 -1.18 8.05 -26.73 -0.22 -1.40 16 27 C -0.17 -1.04 9.56 -26.73 -0.26 -1.29 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.40 2.64 5.53 -40.82 -0.23 2.41 16 32 H 0.07 1.15 6.62 -51.93 -0.34 0.81 16 33 H 0.06 0.59 7.62 -51.93 -0.40 0.19 16 34 H 0.08 1.00 7.89 -51.93 -0.41 0.59 16 35 H 0.06 0.71 5.07 -51.93 -0.26 0.44 16 36 H 0.06 0.71 6.14 -51.93 -0.32 0.39 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.08 1.28 6.28 -51.93 -0.33 0.96 16 39 H 0.02 0.47 7.58 -51.93 -0.39 0.08 16 40 H -0.01 -0.14 6.30 -51.93 -0.33 -0.47 16 41 H 0.06 1.61 6.88 -51.93 -0.36 1.25 16 42 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.07 1.46 6.95 -51.93 -0.36 1.10 16 44 H 0.07 1.68 8.08 -51.93 -0.42 1.26 16 45 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.10 0.54 5.53 -51.93 -0.29 0.25 16 47 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.10 0.54 7.91 -51.93 -0.41 0.12 16 LS Contribution 373.17 15.07 5.62 5.62 Total: -1.00 -35.31 373.17 -8.23 -43.54 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -7.76 Total: 1.94 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: -0.64 Total: 12.36 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: -0.60 Total: -59.35 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: 0.17 Total: -20.96 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.31 -8.23 -43.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193423489.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.159 kcal (2) G-P(sol) polarization free energy of solvation -35.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds