Wall clock time and date at job start Fri Apr 10 2020 18:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21283 * 120.00049 * 2 1 4 4 N 1.34774 * 120.00148 * 180.02562 * 2 1 3 5 5 C 1.46498 * 120.00223 * 185.24061 * 4 2 1 6 6 C 1.52998 * 109.47014 * 63.60782 * 5 4 2 7 7 C 1.50705 * 109.47087 * 303.60885 * 5 4 2 8 8 O 1.21284 * 119.99745 * 141.23026 * 7 5 4 9 9 N 1.34771 * 119.99986 * 321.23440 * 7 5 4 10 10 C 1.47022 * 125.64960 * 355.36040 * 9 7 5 11 11 C 1.54326 * 107.27059 * 178.98913 * 10 9 7 12 12 C 1.55150 * 102.94277 * 337.80627 * 11 10 9 13 13 H 1.09000 * 111.00810 * 277.38806 * 12 11 10 14 14 N 1.46502 * 111.00205 * 153.57576 * 12 11 10 15 15 C 1.46499 * 120.00105 * 301.45534 * 14 12 11 16 16 C 1.36935 * 120.00072 * 121.45620 * 14 12 11 17 17 H 1.07999 * 120.00171 * 327.96071 * 16 14 12 18 18 C 1.38814 * 120.00246 * 148.23663 * 16 14 12 19 19 N 1.31621 * 119.99677 * 2.81797 * 18 16 14 20 20 Si 1.86802 * 120.00117 * 182.82577 * 18 16 14 21 21 H 1.48500 * 109.47276 * 59.99872 * 20 18 16 22 22 H 1.48503 * 109.47068 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47049 * 299.99543 * 20 18 16 24 24 C 1.47431 * 125.64838 * 175.42055 * 9 7 5 25 25 C 1.53002 * 109.47277 * 183.60915 * 5 4 2 26 26 C 1.53001 * 117.49536 * 13.40332 * 25 5 4 27 27 C 1.52993 * 117.49755 * 304.77874 * 25 5 4 28 28 H 1.08999 * 109.47010 * 269.99503 * 1 2 3 29 29 H 1.08996 * 109.47260 * 29.99578 * 1 2 3 30 30 H 1.09003 * 109.47122 * 150.00193 * 1 2 3 31 31 H 0.96998 * 120.00139 * 5.24342 * 4 2 1 32 32 H 1.08996 * 109.47285 * 300.00306 * 6 5 4 33 33 H 1.08996 * 109.46994 * 60.00322 * 6 5 4 34 34 H 1.09003 * 109.47316 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.87786 * 59.57242 * 10 9 7 36 36 H 1.08993 * 109.88316 * 298.40917 * 10 9 7 37 37 H 1.09003 * 110.71966 * 219.44393 * 11 10 9 38 38 H 1.08996 * 110.72146 * 96.17297 * 11 10 9 39 39 H 1.09002 * 109.47187 * 274.07849 * 15 14 12 40 40 H 1.09004 * 109.47348 * 34.07788 * 15 14 12 41 41 H 1.09001 * 109.47452 * 154.07926 * 15 14 12 42 42 H 0.97001 * 119.99771 * 179.97438 * 19 18 16 43 43 H 1.08991 * 110.36831 * 85.24316 * 24 9 7 44 44 H 1.09000 * 110.36522 * 322.91483 * 24 9 7 45 45 H 1.09002 * 115.54918 * 159.10883 * 25 5 4 46 46 H 1.08998 * 117.50287 * 359.97438 * 26 25 5 47 47 H 1.09007 * 117.49323 * 145.02419 * 26 25 5 48 48 H 1.09001 * 117.49813 * 214.97888 * 27 25 5 49 49 H 1.08997 * 117.50052 * 0.02562 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6413 -1.1699 0.1154 6 6 4.0463 -0.5899 1.4720 7 6 4.2343 -0.3306 -0.9870 8 8 5.1950 0.3746 -0.7623 9 7 3.6968 -0.3637 -2.2225 10 6 2.5990 -1.2401 -2.6562 11 6 2.3057 -0.9097 -4.1349 12 6 2.8724 0.5264 -4.2889 13 1 2.1553 1.2691 -3.9390 14 7 3.2631 0.7907 -5.6760 15 6 4.2623 -0.0579 -6.3299 16 6 2.6942 1.8309 -6.3612 17 1 1.6753 2.1219 -6.1527 18 6 3.4253 2.5077 -7.3278 19 7 4.6458 2.1146 -7.6249 20 14 2.6771 3.9764 -8.2067 21 1 2.3366 5.0268 -7.2137 22 1 3.6539 4.5179 -9.1855 23 1 1.4459 3.5518 -8.9202 24 6 4.1133 0.4721 -3.3633 25 6 4.1595 -2.6048 -0.0011 26 6 3.1857 -3.6681 -0.5129 27 6 3.5851 -3.6438 0.9639 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6990 -2.0054 -0.0777 32 1 3.6771 0.4323 1.5550 33 1 3.6175 -1.1969 2.2692 34 1 5.1329 -0.5923 1.5584 35 1 1.7124 -1.0507 -2.0511 36 1 2.8986 -2.2838 -2.5620 37 1 1.2330 -0.9237 -4.3277 38 1 2.8265 -1.6027 -4.7955 39 1 5.2608 0.3155 -6.1025 40 1 4.1651 -1.0805 -5.9654 41 1 4.1046 -0.0399 -7.4083 42 1 5.1566 2.5873 -8.3006 43 1 4.9543 0.0130 -3.8829 44 1 4.3772 1.4736 -3.0235 45 1 5.2078 -2.7046 -0.2826 46 1 2.1759 -3.3456 -0.7663 47 1 3.5934 -4.4678 -1.1314 48 1 4.2554 -4.4274 1.3170 49 1 2.8377 -3.3053 1.6814 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193423489.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:06 Heat of formation + Delta-G solvation = -21.280846 kcal Electronic energy + Delta-G solvation = -29970.371163 eV Core-core repulsion = 26127.053857 eV Total energy + Delta-G solvation = -3843.317306 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.31369 -40.13651 -39.15893 -38.48504 -36.57777 -35.01735 -33.46245 -32.49702 -31.24951 -29.80849 -29.54977 -28.08431 -26.46720 -24.88386 -23.91533 -23.19515 -22.13918 -21.85007 -20.97380 -20.04656 -18.98796 -18.44825 -18.35676 -17.50562 -16.89194 -16.55569 -16.35045 -16.01695 -15.77367 -15.45320 -15.11348 -15.05993 -14.71923 -14.47891 -14.17404 -14.02742 -13.94803 -13.64159 -13.45595 -13.33523 -13.16963 -12.95266 -12.88312 -12.76661 -12.58173 -12.55802 -12.41842 -12.27782 -12.22924 -12.09315 -11.89827 -11.60714 -11.47859 -11.15179 -11.05538 -10.91412 -10.62482 -10.08488 -9.60512 -8.70360 -7.92005 -5.46087 1.43360 1.46459 1.48043 1.53398 1.61228 1.93112 2.16604 2.47094 2.80038 3.24440 3.37219 3.51417 3.56064 3.84814 3.88068 3.89100 3.93703 4.08058 4.14616 4.24850 4.27972 4.32169 4.43408 4.52099 4.59605 4.62508 4.69752 4.72289 4.78861 4.79442 4.83445 4.97595 5.01806 5.09796 5.13639 5.16768 5.17346 5.22501 5.27008 5.28674 5.37924 5.42047 5.60666 5.68381 6.33265 6.46617 6.59772 7.10059 7.12812 7.24739 7.78350 8.27214 9.12823 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.018663 B = 0.003700 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.967307 B = 7566.453043 C = 7927.152003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.499 3.501 3 O -0.584 6.584 4 N -0.710 5.710 5 C 0.209 3.791 6 C -0.136 4.136 7 C 0.527 3.473 8 O -0.598 6.598 9 N -0.602 5.602 10 C 0.105 3.895 11 C -0.139 4.139 12 C 0.170 3.830 13 H 0.061 0.939 14 N -0.600 5.600 15 C 0.180 3.820 16 C -0.276 4.276 17 H 0.071 0.929 18 C -0.042 4.042 19 N -0.934 5.934 20 Si 0.970 3.030 21 H -0.281 1.281 22 H -0.294 1.294 23 H -0.268 1.268 24 C 0.100 3.900 25 C -0.186 4.186 26 C -0.166 4.166 27 C -0.141 4.141 28 H 0.118 0.882 29 H 0.083 0.917 30 H 0.118 0.882 31 H 0.422 0.578 32 H 0.040 0.960 33 H 0.099 0.901 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.076 0.924 39 H -0.016 1.016 40 H 0.029 0.971 41 H 0.036 0.964 42 H 0.250 0.750 43 H 0.048 0.952 44 H 0.023 0.977 45 H 0.103 0.897 46 H 0.116 0.884 47 H 0.114 0.886 48 H 0.113 0.887 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.503 -18.701 18.589 28.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.289 3.711 3 O -0.463 6.463 4 N -0.371 5.371 5 C 0.119 3.881 6 C -0.194 4.194 7 C 0.316 3.684 8 O -0.478 6.478 9 N -0.334 5.334 10 C -0.017 4.017 11 C -0.179 4.179 12 C 0.061 3.939 13 H 0.080 0.920 14 N -0.322 5.322 15 C 0.036 3.964 16 C -0.406 4.406 17 H 0.089 0.911 18 C -0.238 4.238 19 N -0.579 5.579 20 Si 0.797 3.203 21 H -0.207 1.207 22 H -0.220 1.220 23 H -0.193 1.193 24 C -0.026 4.026 25 C -0.205 4.205 26 C -0.202 4.202 27 C -0.178 4.178 28 H 0.136 0.864 29 H 0.102 0.898 30 H 0.137 0.863 31 H 0.265 0.735 32 H 0.059 0.941 33 H 0.118 0.882 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.095 0.905 39 H 0.003 0.997 40 H 0.047 0.953 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.041 0.959 45 H 0.121 0.879 46 H 0.134 0.866 47 H 0.132 0.868 48 H 0.132 0.868 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.458 -17.541 18.632 27.644 hybrid contribution 0.629 1.414 -0.953 1.817 sum -9.830 -16.127 17.679 25.870 Atomic orbital electron populations 1.21956 0.87259 1.06470 1.06677 1.21821 0.92632 0.82836 0.73860 1.90821 1.71857 1.33549 1.50035 1.46451 1.05141 1.10103 1.75365 1.19663 0.81337 0.94663 0.92486 1.21877 1.02153 1.00921 0.94472 1.21150 0.82487 0.82004 0.82746 1.90641 1.30291 1.44240 1.82644 1.48376 1.36440 1.39407 1.09223 1.22504 0.89537 0.94613 0.95004 1.23088 1.02787 0.96944 0.95084 1.21543 0.92592 0.96338 0.83398 0.92030 1.43920 1.47601 1.33306 1.07358 1.20507 0.89918 0.89879 0.96136 1.19482 0.95592 1.08396 1.17133 0.91089 1.26083 0.95826 1.00380 1.01519 1.70201 1.11512 1.41750 1.34441 0.85316 0.77602 0.79646 0.77718 1.20722 1.21971 1.19285 1.22573 0.99750 0.93009 0.87264 1.22194 1.00036 0.87135 1.11129 1.23292 0.99506 0.99382 0.98070 1.23154 1.03053 0.98794 0.92795 0.86401 0.89816 0.86348 0.73461 0.94101 0.88193 0.92074 0.89554 0.88571 0.88320 0.90541 0.99731 0.95292 0.94533 0.94035 0.93415 0.95864 0.87873 0.86595 0.86751 0.86842 0.86747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 10.31 71.24 0.73 -1.12 16 2 C 0.50 11.04 5.67 87.66 0.50 11.54 16 3 O -0.58 -21.15 14.46 -3.04 -0.04 -21.19 16 4 N -0.71 -11.65 2.66 -426.32 -1.14 -12.78 16 5 C 0.21 4.91 0.49 2.86 0.00 4.92 16 6 C -0.14 -3.39 7.83 71.98 0.56 -2.83 16 7 C 0.53 19.47 5.00 87.66 0.44 19.90 16 8 O -0.60 -28.63 16.34 -3.04 -0.05 -28.68 16 9 N -0.60 -21.42 3.21 -811.79 -2.61 -24.03 16 10 C 0.11 2.58 5.61 86.73 0.49 3.06 16 11 C -0.14 -4.16 6.52 31.78 0.21 -3.95 16 12 C 0.17 7.26 3.55 46.38 0.16 7.43 16 13 H 0.06 2.77 7.96 -2.39 -0.02 2.76 16 14 N -0.60 -30.75 2.95 -695.02 -2.05 -32.80 16 15 C 0.18 9.09 7.75 127.77 0.99 10.08 16 16 C -0.28 -15.44 9.53 84.03 0.80 -14.64 16 17 H 0.07 3.82 7.83 -2.91 -0.02 3.79 16 18 C -0.04 -2.40 5.31 84.86 0.45 -1.95 16 19 N -0.93 -56.54 10.58 21.65 0.23 -56.31 16 20 Si 0.97 45.77 29.55 68.60 2.03 47.80 16 21 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 22 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 24 C 0.10 4.49 6.45 86.85 0.56 5.05 16 25 C -0.19 -3.00 4.97 -10.79 -0.05 -3.05 16 26 C -0.17 -1.33 8.05 30.60 0.25 -1.08 16 27 C -0.14 -1.06 9.56 30.59 0.29 -0.77 16 28 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.42 3.12 5.53 -92.71 -0.51 2.61 16 32 H 0.04 1.30 6.62 -2.39 -0.02 1.29 16 33 H 0.10 1.65 7.62 -2.39 -0.02 1.63 16 34 H 0.06 1.68 7.89 -2.39 -0.02 1.66 16 35 H 0.09 1.67 5.07 -2.39 -0.01 1.66 16 36 H 0.10 1.75 6.14 -2.39 -0.01 1.74 16 37 H 0.10 2.49 8.14 -2.39 -0.02 2.48 16 38 H 0.08 2.32 6.28 -2.39 -0.01 2.31 16 39 H -0.02 -0.89 7.58 -2.39 -0.02 -0.91 16 40 H 0.03 1.23 6.30 -2.38 -0.02 1.21 16 41 H 0.04 1.99 6.88 -2.39 -0.02 1.97 16 42 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 43 H 0.05 2.28 6.95 -2.39 -0.02 2.26 16 44 H 0.02 1.22 8.08 -2.39 -0.02 1.20 16 45 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.12 0.48 5.53 -2.39 -0.01 0.46 16 47 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 48 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.11 0.55 7.91 -2.39 -0.02 0.53 16 Total: -1.00 -86.93 373.17 3.19 -83.73 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 0.45 Total: 11.68 kcal Atomic # 6 Polarization: 26.21 SS G_CDS: 6.38 Total: 32.59 kcal Atomic # 7 Polarization: -120.36 SS G_CDS: -5.57 Total: -125.93 kcal Atomic # 8 Polarization: -49.78 SS G_CDS: -0.09 Total: -49.88 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -86.93 3.19 -83.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193423489.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.453 kcal (2) G-P(sol) polarization free energy of solvation -86.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds