Wall clock time and date at job start Fri Apr 10 2020 18:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.47035 * 2 1 4 4 C 1.34777 * 119.99873 * 179.97438 * 3 2 1 5 5 O 1.21284 * 119.99754 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00137 * 180.02562 * 4 3 2 7 7 C 1.53002 * 109.47303 * 180.02562 * 6 4 3 8 8 C 1.50696 * 109.46926 * 180.02562 * 7 6 4 9 9 O 1.21284 * 120.00486 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99764 * 180.02562 * 8 7 6 11 11 C 1.46506 * 120.00271 * 179.97438 * 10 8 7 12 12 H 1.09005 * 112.88197 * 334.66294 * 11 10 8 13 13 C 1.53945 * 113.66682 * 106.00893 * 11 10 8 14 14 C 1.53943 * 87.29660 * 139.20775 * 13 11 10 15 15 H 1.09002 * 113.66168 * 89.82915 * 14 13 11 16 16 N 1.46499 * 113.66296 * 220.79341 * 14 13 11 17 17 C 1.36941 * 120.00044 * 255.49342 * 16 14 13 18 18 H 1.08004 * 119.99752 * 0.02562 * 17 16 14 19 19 C 1.38810 * 119.99934 * 179.97438 * 17 16 14 20 20 N 1.31613 * 119.99890 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99872 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47014 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.47113 * 119.99909 * 21 19 17 24 24 H 1.48501 * 109.47190 * 240.00233 * 21 19 17 25 25 C 1.52910 * 113.66149 * 203.32230 * 11 10 8 26 26 C 1.52904 * 121.14411 * 94.90678 * 25 11 10 27 27 C 1.53948 * 86.78264 * 209.37406 * 26 25 11 28 28 C 1.52908 * 121.14028 * 346.33408 * 25 11 10 29 29 H 1.09004 * 109.46930 * 299.99770 * 1 2 3 30 30 H 1.09004 * 109.47059 * 59.99372 * 1 2 3 31 31 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46930 * 240.00230 * 2 1 3 33 33 H 1.09000 * 109.47312 * 120.00174 * 2 1 3 34 34 H 0.96999 * 120.00080 * 0.02562 * 3 2 1 35 35 H 1.09000 * 109.46978 * 300.00347 * 6 4 3 36 36 H 1.08996 * 109.47197 * 59.99985 * 6 4 3 37 37 H 1.09000 * 109.46986 * 299.99851 * 7 6 4 38 38 H 1.08996 * 109.47407 * 59.99623 * 7 6 4 39 39 H 0.96999 * 120.00043 * 359.97438 * 10 8 7 40 40 H 1.09000 * 113.58018 * 253.81344 * 13 11 10 41 41 H 1.09004 * 113.57582 * 24.60229 * 13 11 10 42 42 H 0.96999 * 119.99655 * 75.49971 * 16 14 13 43 43 H 0.97010 * 119.99925 * 180.02562 * 20 19 17 44 44 H 1.09002 * 113.66371 * 323.84260 * 26 25 11 45 45 H 1.09001 * 113.66467 * 94.89788 * 26 25 11 46 46 H 1.09006 * 113.57711 * 270.13323 * 27 26 25 47 47 H 1.08996 * 113.65301 * 139.34589 * 27 26 25 48 48 H 1.09001 * 113.66260 * 265.10413 * 28 25 11 49 49 H 1.08997 * 113.65746 * 36.06564 * 28 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1315 0.7057 0.0005 6 6 3.8458 3.0483 0.0011 7 6 5.3758 3.0483 0.0010 8 6 5.8781 4.4691 0.0022 9 8 5.0900 5.3910 0.0026 10 7 7.2032 4.7154 0.0018 11 6 7.6916 6.0966 0.0024 12 1 6.9770 6.7991 -0.4266 13 6 8.2648 6.5488 1.3577 14 6 9.3818 7.2542 0.5675 15 1 9.1441 8.2832 0.2979 16 7 10.7083 7.1159 1.1737 17 6 11.2688 8.1712 1.8426 18 1 10.7328 9.1053 1.9236 19 6 12.5255 8.0400 2.4175 20 7 13.1785 6.9015 2.3191 21 14 13.2898 9.4793 3.3306 22 1 12.3591 10.6361 3.2987 23 1 13.5473 9.0905 4.7404 24 1 14.5701 9.8552 2.6790 25 6 9.1085 6.2467 -0.5526 26 6 9.3494 6.6076 -2.0188 27 6 10.6659 5.8175 -1.9068 28 6 10.0102 5.0291 -0.7585 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.3880 2.1185 0.0004 35 1 3.4827 3.5624 -0.8888 36 1 3.4822 3.5619 0.8911 37 1 5.7392 2.5341 0.8907 38 1 5.7391 2.5348 -0.8892 39 1 7.8335 3.9781 0.0011 40 1 7.6137 7.2349 1.8994 41 1 8.6216 5.7255 1.9767 42 1 11.1896 6.2768 1.1011 43 1 14.0565 6.8096 2.7212 44 1 8.6282 6.1612 -2.7034 45 1 9.4926 7.6747 -2.1889 46 1 11.5135 6.4253 -1.5900 47 1 10.8864 5.2086 -2.7835 48 1 10.6813 4.8352 0.0782 49 1 9.4744 4.1387 -1.0874 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202635053.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:35 Heat of formation + Delta-G solvation = -33.031542 kcal Electronic energy + Delta-G solvation = -27212.897198 eV Core-core repulsion = 23369.070343 eV Total energy + Delta-G solvation = -3843.826854 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.62958 -40.04636 -38.86217 -35.69596 -34.86472 -34.09425 -33.14447 -32.34426 -30.86390 -29.82805 -26.26593 -25.48952 -24.34795 -24.13985 -23.08691 -21.96070 -20.74869 -20.44540 -20.04114 -18.04379 -17.74609 -16.95343 -16.47327 -16.39459 -16.26095 -15.99245 -15.45504 -14.99889 -14.68836 -14.47720 -14.35629 -13.98874 -13.58193 -13.17196 -13.01291 -12.92173 -12.68513 -12.43143 -12.31100 -12.19714 -12.06192 -11.93976 -11.81349 -11.50688 -11.38746 -11.21916 -10.92131 -10.80351 -10.70317 -10.18779 -10.14014 -10.03118 -9.95106 -9.84756 -9.58608 -9.45918 -9.42574 -8.86130 -8.62749 -6.97352 -5.80588 -3.08800 2.35660 2.70944 2.76089 3.39474 3.41759 3.48377 3.49906 4.35040 4.52129 4.57010 4.62224 4.74657 4.80465 4.86206 4.87962 4.95312 4.97563 5.08618 5.25292 5.26456 5.34529 5.40440 5.43794 5.45683 5.57545 5.61788 5.69029 5.71383 5.90823 5.92611 5.98510 6.00560 6.05880 6.07188 6.23549 6.33352 6.40734 6.53230 6.60617 6.64028 6.86449 6.93952 7.08014 7.11236 7.67067 7.69599 7.89620 8.32299 8.38368 9.50136 10.06978 10.41979 11.41764 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.023245 B = 0.002114 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.279753 B =13241.205814 C =13604.831067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.113 3.887 3 N -0.735 5.735 4 C 0.513 3.487 5 O -0.541 6.541 6 C -0.123 4.123 7 C -0.127 4.127 8 C 0.512 3.488 9 O -0.551 6.551 10 N -0.710 5.710 11 C 0.130 3.870 12 H 0.109 0.891 13 C -0.174 4.174 14 C 0.192 3.808 15 H 0.080 0.920 16 N -0.707 5.707 17 C -0.242 4.242 18 H 0.072 0.928 19 C -0.012 4.012 20 N -0.932 5.932 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.118 4.118 26 C -0.126 4.126 27 C -0.130 4.130 28 C -0.117 4.117 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.402 0.598 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.400 0.600 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.387 0.613 43 H 0.255 0.745 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.090 0.910 47 H 0.056 0.944 48 H 0.079 0.921 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.995 -11.582 -8.170 26.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.011 4.011 3 N -0.388 5.388 4 C 0.300 3.700 5 O -0.418 6.418 6 C -0.164 4.164 7 C -0.167 4.167 8 C 0.298 3.702 9 O -0.429 6.429 10 N -0.360 5.360 11 C 0.025 3.975 12 H 0.126 0.874 13 C -0.216 4.216 14 C 0.079 3.921 15 H 0.097 0.903 16 N -0.346 5.346 17 C -0.373 4.373 18 H 0.090 0.910 19 C -0.208 4.208 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.120 4.120 26 C -0.164 4.164 27 C -0.168 4.168 28 C -0.155 4.155 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.236 0.764 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.236 0.764 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.222 0.778 43 H 0.065 0.935 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.108 0.892 47 H 0.075 0.925 48 H 0.097 0.903 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -21.893 -11.428 -8.077 25.983 hybrid contribution 0.557 0.370 0.590 0.892 sum -21.335 -11.057 -7.487 25.170 Atomic orbital electron populations 1.22010 0.94411 1.03279 1.02605 1.21302 0.94256 0.83103 1.02438 1.46087 1.07348 1.08998 1.76372 1.20819 0.82093 0.91822 0.75301 1.90718 1.55256 1.46689 1.49160 1.21355 0.96000 0.93044 1.05965 1.21376 0.95137 0.94377 1.05836 1.20589 0.82706 0.91118 0.75762 1.90678 1.55347 1.46546 1.50363 1.46005 1.06605 1.09370 1.74028 1.22286 0.94140 0.82457 0.98570 0.87358 1.24263 0.99862 1.01284 0.96184 1.21100 0.86460 0.95003 0.89542 0.90256 1.42351 1.14694 1.14734 1.62785 1.19344 0.98969 0.92758 1.26218 0.91011 1.24739 0.97406 0.97166 1.01503 1.69662 1.14396 1.24088 1.49838 0.86128 0.79062 0.81741 0.79319 1.20525 1.21914 1.21893 1.23585 0.93751 0.98981 0.95711 1.22703 0.97513 1.00420 0.95718 1.22732 0.97635 0.98785 0.97629 1.22439 0.98152 0.95355 0.99572 0.91896 0.91926 0.90779 0.91520 0.91495 0.76359 0.88051 0.87972 0.88163 0.88274 0.76445 0.92198 0.90172 0.77758 0.93535 0.91011 0.91492 0.89161 0.92497 0.90271 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.58 10.03 37.16 0.37 -0.21 16 2 C 0.11 0.70 6.39 -4.04 -0.03 0.67 16 3 N -0.73 -4.96 5.56 -60.29 -0.33 -5.30 16 4 C 0.51 4.93 7.83 -10.99 -0.09 4.84 16 5 O -0.54 -7.22 15.98 5.55 0.09 -7.13 16 6 C -0.12 -1.08 4.99 -27.88 -0.14 -1.22 16 7 C -0.13 -1.27 4.99 -27.88 -0.14 -1.41 16 8 C 0.51 6.64 7.83 -10.99 -0.09 6.55 16 9 O -0.55 -8.85 15.60 5.55 0.09 -8.76 16 10 N -0.71 -9.18 5.27 -53.37 -0.28 -9.46 16 11 C 0.13 1.97 4.09 -67.48 -0.28 1.69 16 12 H 0.11 1.72 7.50 -51.93 -0.39 1.33 16 13 C -0.17 -3.06 7.68 -25.75 -0.20 -3.26 16 14 C 0.19 3.69 4.36 -67.38 -0.29 3.40 16 15 H 0.08 1.55 8.12 -51.93 -0.42 1.13 16 16 N -0.71 -16.89 5.36 -52.89 -0.28 -17.17 16 17 C -0.24 -6.53 9.98 -15.06 -0.15 -6.68 16 18 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 19 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -27.43 13.06 55.49 0.72 -26.71 16 21 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 C -0.12 -1.84 1.07 -154.61 -0.17 -2.01 16 26 C -0.13 -1.82 7.85 -26.29 -0.21 -2.02 16 27 C -0.13 -1.97 8.08 -25.75 -0.21 -2.18 16 28 C -0.12 -1.76 6.77 -26.28 -0.18 -1.94 16 29 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.40 1.68 8.47 -40.82 -0.35 1.33 16 35 H 0.10 0.82 8.10 -51.93 -0.42 0.40 16 36 H 0.10 0.86 8.10 -51.93 -0.42 0.44 16 37 H 0.10 0.99 8.10 -51.93 -0.42 0.57 16 38 H 0.10 0.93 8.10 -51.93 -0.42 0.51 16 39 H 0.40 4.53 6.98 -40.82 -0.28 4.25 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 42 H 0.39 9.71 5.87 -40.82 -0.24 9.47 16 43 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 47 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.08 1.38 6.43 -51.93 -0.33 1.05 16 49 H 0.07 0.89 6.99 -51.93 -0.36 0.53 16 LS Contribution 397.60 15.07 5.99 5.99 Total: -1.00 -33.09 397.60 -9.16 -42.25 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -8.26 Total: 13.38 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -1.88 Total: -4.21 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: -0.18 Total: -58.63 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: 0.18 Total: -15.89 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.09 -9.16 -42.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202635053.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.219 kcal (2) G-P(sol) polarization free energy of solvation -33.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds