Wall clock time and date at job start Fri Apr 10 2020 18:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47227 * 2 1 4 4 C 1.34777 * 119.99870 * 180.02562 * 3 2 1 5 5 O 1.21284 * 120.00183 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99901 * 179.97438 * 4 3 2 7 7 N 1.46900 * 109.47010 * 179.97438 * 6 4 3 8 8 C 1.48726 * 111.00059 * 60.72141 * 7 6 4 9 9 C 1.55005 * 103.35276 * 158.81766 * 8 7 6 10 10 C 1.54802 * 102.94253 * 323.04058 * 9 8 7 11 11 C 1.47082 * 110.99748 * 177.87609 * 7 6 4 12 12 C 1.53860 * 110.71474 * 93.72731 * 11 7 6 13 13 C 1.54808 * 101.51306 * 215.40397 * 12 11 7 14 14 N 1.46855 * 105.42367 * 25.06400 * 13 12 11 15 15 C 1.46495 * 124.36906 * 163.03753 * 14 13 12 16 16 C 1.53000 * 109.47274 * 269.72662 * 15 14 13 17 17 C 1.50701 * 109.47448 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99773 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99831 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99712 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00559 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47099 * 89.99577 * 21 19 17 23 23 H 1.48494 * 109.47285 * 209.99985 * 21 19 17 24 24 H 1.48503 * 109.46569 * 330.00012 * 21 19 17 25 25 C 1.34668 * 111.26038 * 342.77135 * 14 13 12 26 26 O 1.21280 * 125.07605 * 181.12077 * 25 14 13 27 27 H 1.08998 * 109.47264 * 300.00116 * 1 2 3 28 28 H 1.09001 * 109.47128 * 59.99957 * 1 2 3 29 29 H 1.09002 * 109.47445 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46870 * 240.00028 * 2 1 3 31 31 H 1.09001 * 109.47128 * 120.00043 * 2 1 3 32 32 H 0.96995 * 120.00188 * 359.97438 * 3 2 1 33 33 H 1.09004 * 109.47128 * 60.00146 * 6 4 3 34 34 H 1.08994 * 109.47450 * 300.00045 * 6 4 3 35 35 H 1.08996 * 110.64588 * 40.34636 * 8 7 6 36 36 H 1.09007 * 110.64030 * 277.28077 * 8 7 6 37 37 H 1.08999 * 110.71801 * 204.67823 * 9 8 7 38 38 H 1.08996 * 110.87101 * 81.47618 * 9 8 7 39 39 H 1.08997 * 110.36826 * 263.06249 * 10 9 8 40 40 H 1.09001 * 110.36942 * 140.72949 * 10 9 8 41 41 H 1.09007 * 110.99894 * 333.67255 * 12 11 7 42 42 H 1.08993 * 111.00892 * 97.52386 * 12 11 7 43 43 H 1.08997 * 110.38016 * 266.03546 * 13 12 11 44 44 H 1.09004 * 110.18597 * 143.99663 * 13 12 11 45 45 H 1.09000 * 109.47472 * 149.72822 * 15 14 13 46 46 H 1.09006 * 109.47399 * 29.72328 * 15 14 13 47 47 H 1.09008 * 109.47146 * 300.00116 * 16 15 14 48 48 H 1.09003 * 109.47228 * 59.99773 * 16 15 14 49 49 H 0.96999 * 119.99920 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6274 -0.0005 5 8 4.1316 0.7055 -0.0005 6 6 3.8458 3.0482 -0.0011 7 7 5.3148 3.0481 -0.0010 8 6 5.8479 2.3685 -1.2117 9 6 7.2890 2.9268 -1.3303 10 6 7.1274 4.4010 -0.8865 11 6 5.8419 4.4203 -0.0524 12 6 6.1242 4.9484 1.3649 13 6 5.7501 6.4433 1.2178 14 7 4.7881 6.4980 0.1095 15 6 3.9001 7.6316 -0.1596 16 6 2.5797 7.4338 0.5877 17 6 1.6659 8.5996 0.3104 18 1 1.9942 9.4017 -0.3340 19 6 0.4108 8.6422 0.8794 20 7 -0.3865 9.6599 0.6378 21 14 -0.1569 7.2553 1.9946 22 1 0.2180 7.5637 3.3981 23 1 -1.6317 7.1130 1.8960 24 1 0.4920 5.9868 1.5762 25 6 4.8317 5.3740 -0.6309 26 8 4.1578 5.1622 -1.6167 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.3881 2.1184 -0.0004 33 1 3.4828 3.5623 0.8889 34 1 3.4822 3.5618 -0.8910 35 1 5.2600 2.6324 -2.0908 36 1 5.8648 1.2879 -1.0697 37 1 7.6408 2.8705 -2.3604 38 1 7.9675 2.3953 -0.6630 39 1 7.0252 5.0500 -1.7562 40 1 7.9783 4.7098 -0.2793 41 1 5.4892 4.4535 2.0998 42 1 7.1774 4.8351 1.6215 43 1 6.6343 7.0342 0.9789 44 1 5.2889 6.8078 2.1358 45 1 3.7056 7.6948 -1.2302 46 1 4.3743 8.5530 0.1786 47 1 2.1054 6.5124 0.2496 48 1 2.7741 7.3707 1.6584 49 1 -1.2697 9.6897 1.0378 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273698597.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:00 Heat of formation + Delta-G solvation = -55.061668 kcal Electronic energy + Delta-G solvation = -29278.248090 eV Core-core repulsion = 25433.465938 eV Total energy + Delta-G solvation = -3844.782152 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.42628 -39.53655 -37.47539 -36.33317 -35.30629 -33.70512 -32.54682 -31.95770 -30.67671 -29.54092 -27.80204 -26.67061 -25.30918 -23.56471 -22.85074 -21.73361 -21.43459 -20.49565 -20.27978 -18.77412 -17.31011 -16.93130 -16.62311 -15.98757 -15.82147 -15.65331 -15.32921 -15.12243 -14.83783 -14.50724 -14.29808 -13.87463 -13.66980 -13.30687 -13.06240 -12.95103 -12.88339 -12.74271 -12.61722 -12.19271 -12.12134 -12.03318 -11.83124 -11.70875 -11.52652 -11.46039 -11.17330 -11.09037 -10.95412 -10.68969 -10.48580 -10.13228 -10.07333 -9.87014 -9.64865 -9.36245 -9.15140 -8.63711 -8.43196 -8.09471 -6.13931 -4.13379 2.60382 2.73660 3.00725 3.22000 3.29973 3.32145 3.32599 3.90562 4.30490 4.35831 4.39344 4.56989 4.70082 4.82136 4.89385 4.91728 5.05854 5.07599 5.13383 5.14496 5.19935 5.32620 5.50977 5.56809 5.60704 5.62308 5.67688 5.70770 5.71922 5.80668 5.83406 5.84697 5.92231 5.99501 6.06333 6.11019 6.22508 6.39098 6.49624 6.69592 6.76063 6.78583 7.05504 7.22008 7.43866 7.50129 7.66130 8.22587 8.36605 8.42421 8.89035 9.47453 10.99180 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.009107 B = 0.005176 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3073.852216 B = 5407.932086 C = 7841.853931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.117 3.883 3 N -0.735 5.735 4 C 0.522 3.478 5 O -0.531 6.531 6 C -0.007 4.007 7 N -0.465 5.465 8 C 0.031 3.969 9 C -0.120 4.120 10 C -0.107 4.107 11 C 0.057 3.943 12 C -0.112 4.112 13 C 0.096 3.904 14 N -0.608 5.608 15 C 0.134 3.866 16 C -0.022 4.022 17 C -0.522 4.522 18 H 0.074 0.926 19 C 0.071 3.929 20 N -0.899 5.899 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.267 1.267 25 C 0.499 3.501 26 O -0.529 6.529 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.403 0.597 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.048 0.952 36 H 0.104 0.896 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.018 0.982 48 H 0.013 0.987 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.062 -15.616 0.635 19.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.006 4.006 3 N -0.389 5.389 4 C 0.309 3.691 5 O -0.408 6.408 6 C -0.137 4.137 7 N -0.189 5.189 8 C -0.096 4.096 9 C -0.158 4.158 10 C -0.145 4.145 11 C -0.036 4.036 12 C -0.150 4.150 13 C -0.027 4.027 14 N -0.340 5.340 15 C 0.014 3.986 16 C -0.060 4.060 17 C -0.561 4.561 18 H 0.092 0.908 19 C -0.131 4.131 20 N -0.538 5.538 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.192 1.192 25 C 0.285 3.715 26 O -0.407 6.407 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.238 0.762 33 H 0.119 0.881 34 H 0.125 0.875 35 H 0.067 0.933 36 H 0.122 0.878 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.095 0.905 46 H 0.092 0.908 47 H 0.036 0.964 48 H 0.031 0.969 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.193 -16.517 0.631 20.540 hybrid contribution -1.280 0.345 0.057 1.327 sum 10.913 -16.172 0.688 19.521 Atomic orbital electron populations 1.22020 0.94443 1.03091 1.02882 1.21250 0.94229 0.82996 1.02146 1.46063 1.07317 1.09071 1.76491 1.20457 0.82027 0.91278 0.75379 1.90630 1.54955 1.46311 1.48858 1.22732 0.90414 0.94724 1.05867 1.64840 1.05770 1.09401 1.38867 1.23483 0.94265 1.01097 0.90774 1.22530 0.97155 0.94697 1.01449 1.22261 0.94833 0.98140 0.99290 1.22167 0.95273 0.89114 0.97078 1.22658 1.03324 0.93763 0.95294 1.22235 0.92595 0.96900 0.91015 1.48702 1.38270 1.18116 1.28952 1.21631 0.90176 0.85449 1.01367 1.19873 0.92681 0.98210 0.95258 1.20947 0.98874 1.05674 1.30574 0.90789 1.24974 0.96441 0.95589 0.96126 1.69904 1.08985 1.30323 1.44563 0.86776 0.77863 0.83360 0.81261 1.20247 1.21244 1.19184 1.21107 0.83684 0.83431 0.83280 1.90627 1.46692 1.77418 1.25980 0.91834 0.91800 0.90857 0.91680 0.91630 0.76244 0.88135 0.87493 0.93339 0.87828 0.90911 0.90469 0.90993 0.89856 0.89372 0.88913 0.91039 0.89915 0.90516 0.90831 0.96354 0.96896 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 10.03 37.16 0.37 -0.93 16 2 C 0.12 1.20 6.39 -4.04 -0.03 1.18 16 3 N -0.74 -8.95 5.56 -60.29 -0.33 -9.29 16 4 C 0.52 7.70 7.57 -10.99 -0.08 7.61 16 5 O -0.53 -8.95 14.14 5.55 0.08 -8.87 16 6 C -0.01 -0.10 4.46 -4.98 -0.02 -0.12 16 7 N -0.47 -6.62 4.77 -218.20 -1.04 -7.66 16 8 C 0.03 0.42 5.59 -1.75 -0.01 0.41 16 9 C -0.12 -1.28 7.07 -24.72 -0.17 -1.46 16 10 C -0.11 -1.18 6.24 -25.65 -0.16 -1.34 16 11 C 0.06 0.76 0.76 -132.18 -0.10 0.66 16 12 C -0.11 -1.23 6.40 -25.33 -0.16 -1.39 16 13 C 0.10 1.16 7.37 -2.90 -0.02 1.13 16 14 N -0.61 -9.95 2.94 -172.40 -0.51 -10.45 16 15 C 0.13 2.60 5.88 -4.04 -0.02 2.58 16 16 C -0.02 -0.51 4.37 -27.88 -0.12 -0.63 16 17 C -0.52 -14.47 9.66 -34.44 -0.33 -14.80 16 18 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 19 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 20 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 21 Si 0.88 21.21 27.47 -169.99 -4.67 16.54 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 25 C 0.50 8.43 5.46 -11.14 -0.06 8.37 16 26 O -0.53 -10.71 15.08 5.56 0.08 -10.63 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.40 4.45 8.47 -40.82 -0.35 4.11 16 33 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 34 H 0.11 1.84 5.06 -51.93 -0.26 1.58 16 35 H 0.05 0.73 7.98 -51.93 -0.41 0.31 16 36 H 0.10 1.50 6.39 -51.92 -0.33 1.17 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.86 7.73 -51.93 -0.40 0.46 16 40 H 0.08 0.72 7.29 -51.93 -0.38 0.34 16 41 H 0.09 1.01 8.10 -51.93 -0.42 0.59 16 42 H 0.09 0.77 7.41 -51.93 -0.38 0.39 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.08 1.61 7.93 -51.93 -0.41 1.20 16 46 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 47 H 0.02 0.45 7.20 -51.92 -0.37 0.07 16 48 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 49 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 384.39 15.07 5.79 5.79 Total: -1.00 -33.82 384.39 -9.20 -43.02 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -8.36 Total: 4.77 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -1.02 Total: 3.18 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: -1.11 Total: -53.80 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: 0.16 Total: -19.50 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.82 -9.20 -43.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273698597.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.041 kcal (2) G-P(sol) polarization free energy of solvation -33.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds