Wall clock time and date at job start Fri Apr 10 2020 18:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47227 * 2 1 4 4 C 1.34777 * 119.99870 * 180.02562 * 3 2 1 5 5 O 1.21284 * 120.00183 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99901 * 179.97438 * 4 3 2 7 7 N 1.46900 * 109.47010 * 179.97438 * 6 4 3 8 8 C 1.48726 * 111.00059 * 60.72141 * 7 6 4 9 9 C 1.55005 * 103.35276 * 158.81766 * 8 7 6 10 10 C 1.54802 * 102.94253 * 323.04058 * 9 8 7 11 11 C 1.47082 * 110.99748 * 177.87609 * 7 6 4 12 12 C 1.53860 * 110.71474 * 93.72731 * 11 7 6 13 13 C 1.54808 * 101.51306 * 215.40397 * 12 11 7 14 14 N 1.46855 * 105.42367 * 25.06400 * 13 12 11 15 15 C 1.46495 * 124.36906 * 163.03753 * 14 13 12 16 16 C 1.53000 * 109.47274 * 269.72662 * 15 14 13 17 17 C 1.50701 * 109.47448 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99773 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99831 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99712 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00559 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47099 * 89.99577 * 21 19 17 23 23 H 1.48494 * 109.47285 * 209.99985 * 21 19 17 24 24 H 1.48503 * 109.46569 * 330.00012 * 21 19 17 25 25 C 1.34668 * 111.26038 * 342.77135 * 14 13 12 26 26 O 1.21280 * 125.07605 * 181.12077 * 25 14 13 27 27 H 1.08998 * 109.47264 * 300.00116 * 1 2 3 28 28 H 1.09001 * 109.47128 * 59.99957 * 1 2 3 29 29 H 1.09002 * 109.47445 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46870 * 240.00028 * 2 1 3 31 31 H 1.09001 * 109.47128 * 120.00043 * 2 1 3 32 32 H 0.96995 * 120.00188 * 359.97438 * 3 2 1 33 33 H 1.09004 * 109.47128 * 60.00146 * 6 4 3 34 34 H 1.08994 * 109.47450 * 300.00045 * 6 4 3 35 35 H 1.08996 * 110.64588 * 40.34636 * 8 7 6 36 36 H 1.09007 * 110.64030 * 277.28077 * 8 7 6 37 37 H 1.08999 * 110.71801 * 204.67823 * 9 8 7 38 38 H 1.08996 * 110.87101 * 81.47618 * 9 8 7 39 39 H 1.08997 * 110.36826 * 263.06249 * 10 9 8 40 40 H 1.09001 * 110.36942 * 140.72949 * 10 9 8 41 41 H 1.09007 * 110.99894 * 333.67255 * 12 11 7 42 42 H 1.08993 * 111.00892 * 97.52386 * 12 11 7 43 43 H 1.08997 * 110.38016 * 266.03546 * 13 12 11 44 44 H 1.09004 * 110.18597 * 143.99663 * 13 12 11 45 45 H 1.09000 * 109.47472 * 149.72822 * 15 14 13 46 46 H 1.09006 * 109.47399 * 29.72328 * 15 14 13 47 47 H 1.09008 * 109.47146 * 300.00116 * 16 15 14 48 48 H 1.09003 * 109.47228 * 59.99773 * 16 15 14 49 49 H 0.96999 * 119.99920 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6274 -0.0005 5 8 4.1316 0.7055 -0.0005 6 6 3.8458 3.0482 -0.0011 7 7 5.3148 3.0481 -0.0010 8 6 5.8479 2.3685 -1.2117 9 6 7.2890 2.9268 -1.3303 10 6 7.1274 4.4010 -0.8865 11 6 5.8419 4.4203 -0.0524 12 6 6.1242 4.9484 1.3649 13 6 5.7501 6.4433 1.2178 14 7 4.7881 6.4980 0.1095 15 6 3.9001 7.6316 -0.1596 16 6 2.5797 7.4338 0.5877 17 6 1.6659 8.5996 0.3104 18 1 1.9942 9.4017 -0.3340 19 6 0.4108 8.6422 0.8794 20 7 -0.3865 9.6599 0.6378 21 14 -0.1569 7.2553 1.9946 22 1 0.2180 7.5637 3.3981 23 1 -1.6317 7.1130 1.8960 24 1 0.4920 5.9868 1.5762 25 6 4.8317 5.3740 -0.6309 26 8 4.1578 5.1622 -1.6167 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.3881 2.1184 -0.0004 33 1 3.4828 3.5623 0.8889 34 1 3.4822 3.5618 -0.8910 35 1 5.2600 2.6324 -2.0908 36 1 5.8648 1.2879 -1.0697 37 1 7.6408 2.8705 -2.3604 38 1 7.9675 2.3953 -0.6630 39 1 7.0252 5.0500 -1.7562 40 1 7.9783 4.7098 -0.2793 41 1 5.4892 4.4535 2.0998 42 1 7.1774 4.8351 1.6215 43 1 6.6343 7.0342 0.9789 44 1 5.2889 6.8078 2.1358 45 1 3.7056 7.6948 -1.2302 46 1 4.3743 8.5530 0.1786 47 1 2.1054 6.5124 0.2496 48 1 2.7741 7.3707 1.6584 49 1 -1.2697 9.6897 1.0378 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273698597.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:00 Heat of formation + Delta-G solvation = -80.340063 kcal Electronic energy + Delta-G solvation = -29279.344243 eV Core-core repulsion = 25433.465938 eV Total energy + Delta-G solvation = -3845.878306 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.57035 -40.68931 -38.63805 -37.65509 -36.32626 -35.54065 -33.78103 -33.47776 -31.53880 -31.09985 -28.83982 -27.69990 -27.04791 -24.61842 -23.71921 -23.24977 -22.50311 -21.68663 -21.54912 -20.03514 -19.10146 -18.24465 -17.74927 -17.31018 -16.91037 -16.68910 -16.62646 -16.35191 -16.08639 -15.83100 -15.54434 -15.11543 -14.84338 -14.80402 -14.61823 -14.39204 -14.00776 -13.84013 -13.64951 -13.42108 -13.19584 -13.06662 -12.89641 -12.76947 -12.72608 -12.52879 -12.41778 -12.28821 -12.15252 -11.97859 -11.95805 -11.79351 -11.54503 -11.49706 -11.16578 -10.83065 -10.81201 -10.18348 -9.73236 -9.34831 -8.33938 -6.39315 1.30816 1.33129 1.36599 1.44628 1.53116 1.97488 2.05805 2.31445 2.83024 3.01135 3.28566 3.44478 3.56929 3.72495 3.91068 4.02825 4.08993 4.14534 4.17116 4.20202 4.26070 4.27983 4.39344 4.44596 4.48252 4.59561 4.69596 4.72361 4.78293 4.84334 4.88852 4.97341 4.98015 5.05413 5.09458 5.12857 5.17161 5.18946 5.22980 5.27533 5.40943 5.47474 5.62607 5.70701 5.74546 6.18160 6.20525 6.38965 6.67262 7.08338 7.11462 7.25869 8.82421 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.009107 B = 0.005176 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3073.852216 B = 5407.932086 C = 7841.853931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.115 3.885 3 N -0.729 5.729 4 C 0.521 3.479 5 O -0.555 6.555 6 C -0.001 4.001 7 N -0.464 5.464 8 C 0.030 3.970 9 C -0.111 4.111 10 C -0.104 4.104 11 C 0.058 3.942 12 C -0.101 4.101 13 C 0.090 3.910 14 N -0.612 5.612 15 C 0.145 3.855 16 C -0.011 4.011 17 C -0.533 4.533 18 H 0.038 0.962 19 C 0.010 3.990 20 N -0.946 5.946 21 Si 0.948 3.052 22 H -0.260 1.260 23 H -0.283 1.283 24 H -0.254 1.254 25 C 0.489 3.511 26 O -0.574 6.574 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.409 0.591 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.023 0.977 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.058 0.942 40 H 0.120 0.880 41 H 0.083 0.917 42 H 0.132 0.868 43 H 0.102 0.898 44 H 0.089 0.911 45 H 0.050 0.950 46 H 0.090 0.910 47 H 0.002 0.998 48 H 0.028 0.972 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.990 -17.215 2.761 22.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.008 4.008 3 N -0.382 5.382 4 C 0.307 3.693 5 O -0.433 6.433 6 C -0.132 4.132 7 N -0.187 5.187 8 C -0.098 4.098 9 C -0.149 4.149 10 C -0.142 4.142 11 C -0.036 4.036 12 C -0.139 4.139 13 C -0.031 4.031 14 N -0.344 5.344 15 C 0.024 3.976 16 C -0.050 4.050 17 C -0.571 4.571 18 H 0.056 0.944 19 C -0.187 4.187 20 N -0.586 5.586 21 Si 0.771 3.229 22 H -0.185 1.185 23 H -0.209 1.209 24 H -0.178 1.178 25 C 0.276 3.724 26 O -0.455 6.455 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.244 0.756 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.042 0.958 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.115 0.885 39 H 0.077 0.923 40 H 0.139 0.861 41 H 0.102 0.898 42 H 0.151 0.849 43 H 0.120 0.880 44 H 0.107 0.893 45 H 0.069 0.931 46 H 0.108 0.892 47 H 0.021 0.979 48 H 0.046 0.954 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.140 -18.116 2.779 23.148 hybrid contribution -1.911 0.897 -0.690 2.221 sum 12.229 -17.219 2.089 21.222 Atomic orbital electron populations 1.21985 0.92280 1.04387 1.02979 1.21396 0.95960 0.81684 1.01786 1.46120 1.06634 1.10267 1.75186 1.20442 0.82710 0.90841 0.75311 1.90611 1.55696 1.46747 1.50285 1.22604 0.91316 0.94748 1.04547 1.64921 1.04979 1.09979 1.38838 1.23443 0.96099 1.00581 0.89634 1.22543 0.95166 0.94392 1.02836 1.22349 0.94707 0.98069 0.99086 1.22358 0.94891 0.87460 0.98857 1.22741 1.05658 0.92317 0.93198 1.22596 0.92580 0.98326 0.89632 1.48741 1.38338 1.16997 1.30289 1.21204 0.89602 0.87521 0.99309 1.19714 0.93566 0.95311 0.96382 1.21268 1.00014 1.06194 1.29667 0.94384 1.25932 0.96546 0.98325 0.97911 1.70052 1.09632 1.32700 1.46246 0.85697 0.77459 0.80181 0.79564 1.18471 1.20877 1.17783 1.21885 0.83809 0.84007 0.82695 1.90602 1.48542 1.78288 1.28052 0.91542 0.91821 0.88973 0.92199 0.91805 0.75617 0.88291 0.89891 0.95831 0.88900 0.89707 0.88505 0.92307 0.86130 0.89839 0.84944 0.87962 0.89261 0.93126 0.89172 0.97926 0.95399 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 10.03 71.98 0.72 -1.51 16 2 C 0.11 2.27 6.39 86.38 0.55 2.82 16 3 N -0.73 -17.60 5.56 -463.06 -2.57 -20.18 16 4 C 0.52 15.43 7.57 87.66 0.66 16.09 16 5 O -0.55 -18.73 14.14 -3.04 -0.04 -18.78 16 6 C 0.00 -0.03 4.46 85.56 0.38 0.35 16 7 N -0.46 -12.72 4.77 -844.24 -4.03 -16.75 16 8 C 0.03 0.80 5.59 86.64 0.48 1.28 16 9 C -0.11 -2.09 7.07 31.90 0.23 -1.87 16 10 C -0.10 -1.97 6.24 31.29 0.20 -1.78 16 11 C 0.06 1.42 0.76 3.05 0.00 1.42 16 12 C -0.10 -1.81 6.40 31.50 0.20 -1.61 16 13 C 0.09 1.85 7.37 86.93 0.64 2.49 16 14 N -0.61 -19.25 2.94 -817.80 -2.41 -21.66 16 15 C 0.15 5.66 5.88 86.38 0.51 6.17 16 16 C -0.01 -0.53 4.37 29.85 0.13 -0.40 16 17 C -0.53 -30.29 9.66 25.60 0.25 -30.04 16 18 H 0.04 2.36 7.99 -2.91 -0.02 2.34 16 19 C 0.01 0.60 5.47 84.65 0.46 1.07 16 20 N -0.95 -58.56 13.96 21.45 0.30 -58.26 16 21 Si 0.95 43.48 27.47 68.60 1.88 45.36 16 22 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 25 C 0.49 16.33 5.46 87.61 0.48 16.80 16 26 O -0.57 -24.12 15.08 -3.03 -0.05 -24.17 16 27 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.41 8.92 8.47 -92.71 -0.79 8.14 16 33 H 0.10 2.97 8.14 -2.38 -0.02 2.95 16 34 H 0.08 2.99 5.06 -2.39 -0.01 2.98 16 35 H 0.02 0.73 7.98 -2.39 -0.02 0.71 16 36 H 0.09 2.68 6.39 -2.38 -0.02 2.67 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.06 1.30 7.73 -2.39 -0.02 1.28 16 40 H 0.12 1.42 7.29 -2.39 -0.02 1.40 16 41 H 0.08 1.62 8.10 -2.38 -0.02 1.60 16 42 H 0.13 1.39 7.41 -2.39 -0.02 1.37 16 43 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 45 H 0.05 2.21 7.93 -2.39 -0.02 2.19 16 46 H 0.09 3.18 8.14 -2.38 -0.02 3.16 16 47 H 0.00 0.12 7.20 -2.38 -0.02 0.10 16 48 H 0.03 1.21 7.57 -2.39 -0.02 1.19 16 49 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -77.08 384.39 -0.92 -77.99 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: 0.10 Total: 25.15 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: 5.90 Total: 11.29 kcal Atomic # 7 Polarization: -108.14 SS G_CDS: -8.71 Total: -116.85 kcal Atomic # 8 Polarization: -42.85 SS G_CDS: -0.09 Total: -42.94 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.88 Total: 45.36 kcal Total: -77.08 -0.92 -77.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273698597.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.346 kcal (2) G-P(sol) polarization free energy of solvation -77.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds