Wall clock time and date at job start Fri Apr 10 2020 18:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21283 * 120.00172 * 2 1 4 4 N 1.34774 * 120.00021 * 179.97438 * 2 1 3 5 5 C 1.46496 * 120.00484 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47607 * 180.02562 * 5 4 2 7 7 N 1.46890 * 109.47375 * 174.75027 * 6 5 4 8 8 C 1.48006 * 111.00098 * 174.74952 * 7 6 5 9 9 C 1.54292 * 107.02787 * 214.40843 * 8 7 6 10 10 C 1.53313 * 104.79538 * 1.99040 * 9 8 7 11 11 C 1.53349 * 111.50671 * 141.01361 * 10 9 8 12 12 C 1.54761 * 101.44083 * 98.54719 * 11 10 9 13 13 N 1.46904 * 105.53567 * 24.28490 * 12 11 10 14 14 C 1.46501 * 124.37593 * 163.27027 * 13 12 11 15 15 C 1.53001 * 109.47194 * 90.00032 * 14 13 12 16 16 C 1.50699 * 109.47373 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99791 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99932 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00125 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99775 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46811 * 90.00482 * 20 18 16 22 22 H 1.48499 * 109.46784 * 210.00022 * 20 18 16 23 23 H 1.48498 * 109.46985 * 330.00296 * 20 18 16 24 24 C 1.34832 * 111.24980 * 343.23080 * 13 12 11 25 25 O 1.21279 * 125.18502 * 181.15093 * 24 13 12 26 26 C 1.48776 * 111.00260 * 57.11544 * 7 6 5 27 27 H 1.08994 * 109.47071 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46798 * 300.00702 * 1 2 3 29 29 H 1.08999 * 109.46947 * 60.00385 * 1 2 3 30 30 H 0.97003 * 119.99660 * 359.97438 * 4 2 1 31 31 H 1.09005 * 109.47143 * 60.00351 * 5 4 2 32 32 H 1.08996 * 109.47144 * 300.00292 * 5 4 2 33 33 H 1.09002 * 109.46973 * 54.74580 * 6 5 4 34 34 H 1.09007 * 109.46989 * 294.75349 * 6 5 4 35 35 H 1.09001 * 109.92717 * 95.06573 * 8 7 6 36 36 H 1.08996 * 109.92137 * 333.75133 * 8 7 6 37 37 H 1.09005 * 110.37185 * 120.81458 * 9 8 7 38 38 H 1.08998 * 110.37268 * 243.15246 * 9 8 7 39 39 H 1.08995 * 111.03269 * 216.58712 * 11 10 9 40 40 H 1.09007 * 111.03290 * 340.46697 * 11 10 9 41 41 H 1.09007 * 110.23563 * 143.30576 * 12 11 10 42 42 H 1.09006 * 110.23334 * 265.26823 * 12 11 10 43 43 H 1.08998 * 109.47277 * 210.00372 * 14 13 12 44 44 H 1.09001 * 109.47309 * 330.00759 * 14 13 12 45 45 H 1.08998 * 109.47286 * 300.00334 * 15 14 13 46 46 H 1.09005 * 109.46714 * 59.99786 * 15 14 13 47 47 H 0.96995 * 120.00371 * 179.97438 * 19 18 16 48 48 H 1.09001 * 110.67852 * 40.00922 * 26 7 6 49 49 H 1.08995 * 110.68739 * 276.83252 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1673 0.0011 6 6 4.1559 -2.6098 0.0010 7 7 5.6193 -2.6117 -0.1252 8 6 6.1604 -3.9839 -0.0032 9 6 7.5249 -3.8700 0.7080 10 6 7.6826 -2.3763 1.0155 11 6 8.3216 -2.1499 2.3910 12 6 9.7986 -1.8957 2.0053 13 7 9.7656 -1.4124 0.6184 14 6 10.8749 -0.7213 -0.0434 15 6 11.7798 -1.7478 -0.7277 16 6 12.9206 -1.0368 -1.4090 17 1 12.9932 0.0395 -1.3585 18 6 13.8722 -1.7606 -2.0958 19 7 13.7841 -3.0714 -2.1567 20 14 15.2866 -0.8793 -2.9396 21 1 16.4248 -0.7516 -1.9943 22 1 15.7160 -1.6581 -4.1289 23 1 14.8436 0.4722 -3.3665 24 6 8.5826 -1.6879 0.0330 25 8 8.2909 -1.4197 -1.1132 26 6 6.2498 -1.8234 0.9677 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6958 -2.0072 0.0013 31 1 4.0089 -0.6533 0.8912 32 1 4.0096 -0.6537 -0.8888 33 1 3.7180 -3.1499 -0.8385 34 1 3.8709 -3.0960 0.9340 35 1 6.2929 -4.4204 -0.9931 36 1 5.4830 -4.5989 0.5893 37 1 7.5210 -4.4491 1.6315 38 1 8.3252 -4.2087 0.0501 39 1 7.8905 -1.2785 2.8839 40 1 8.2272 -3.0373 3.0171 41 1 10.2339 -1.1389 2.6580 42 1 10.3695 -2.8222 2.0682 43 1 10.4800 -0.0309 -0.7887 44 1 11.4506 -0.1661 0.6972 45 1 12.1747 -2.4381 0.0177 46 1 11.2041 -2.3031 -1.4682 47 1 14.4533 -3.5806 -2.6402 48 1 5.7377 -1.9989 1.9138 49 1 6.2550 -0.7613 0.7228 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274000077.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:07 Heat of formation + Delta-G solvation = -97.767118 kcal Electronic energy + Delta-G solvation = -27793.321334 eV Core-core repulsion = 23946.687334 eV Total energy + Delta-G solvation = -3846.633999 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.10060 -40.63533 -39.19869 -37.41524 -36.41789 -35.59089 -34.18732 -32.48861 -31.06861 -30.44707 -29.26121 -28.08564 -27.02763 -25.11342 -23.62319 -23.28963 -22.06749 -21.76667 -21.43924 -19.89064 -18.68907 -17.87882 -17.67309 -17.20828 -16.86926 -16.81528 -16.63323 -16.28391 -16.12064 -15.90228 -15.21099 -15.02708 -14.72666 -14.61714 -14.47462 -14.28921 -13.99785 -13.87445 -13.58071 -13.33754 -13.23790 -13.18404 -13.05226 -12.87235 -12.80354 -12.72120 -12.56810 -12.19799 -12.10658 -12.00751 -11.91855 -11.80954 -11.52831 -11.42851 -11.03296 -10.62936 -10.51092 -10.17801 -9.52071 -9.29319 -8.25871 -6.38872 1.36660 1.39742 1.50766 1.62327 1.66643 2.15289 2.17542 2.40446 3.02158 3.07154 3.31765 3.47490 3.52476 3.82629 3.91668 4.01157 4.04180 4.14378 4.19089 4.29540 4.37298 4.45074 4.49042 4.52358 4.56034 4.60982 4.67212 4.71491 4.73094 4.82832 4.84401 4.86548 4.90712 4.96947 5.02419 5.10731 5.13258 5.21810 5.32295 5.38358 5.44813 5.60261 5.81335 5.87464 6.10002 6.14228 6.35574 6.56642 6.76326 7.26453 7.30000 7.33509 8.86335 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.019002 B = 0.002397 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.161164 B =11677.005527 C =12176.984981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.499 3.501 3 O -0.609 6.609 4 N -0.713 5.713 5 C 0.122 3.878 6 C 0.049 3.951 7 N -0.540 5.540 8 C 0.046 3.954 9 C -0.106 4.106 10 C -0.097 4.097 11 C -0.103 4.103 12 C 0.092 3.908 13 N -0.626 5.626 14 C 0.142 3.858 15 C 0.026 3.974 16 C -0.546 4.546 17 H 0.065 0.935 18 C -0.001 4.001 19 N -0.932 5.932 20 Si 0.972 3.028 21 H -0.264 1.264 22 H -0.283 1.283 23 H -0.265 1.265 24 C 0.510 3.490 25 O -0.571 6.571 26 C 0.068 3.932 27 H 0.111 0.889 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.420 0.580 31 H 0.057 0.943 32 H 0.039 0.961 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.122 0.878 38 H 0.042 0.958 39 H 0.103 0.897 40 H 0.130 0.870 41 H 0.097 0.903 42 H 0.068 0.932 43 H 0.046 0.954 44 H 0.090 0.910 45 H 0.001 0.999 46 H -0.030 1.030 47 H 0.265 0.735 48 H 0.093 0.907 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.504 -4.114 15.193 30.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.288 3.712 3 O -0.491 6.491 4 N -0.367 5.367 5 C -0.003 4.003 6 C -0.079 4.079 7 N -0.265 5.265 8 C -0.081 4.081 9 C -0.144 4.144 10 C -0.101 4.101 11 C -0.140 4.140 12 C -0.030 4.030 13 N -0.359 5.359 14 C 0.021 3.979 15 C -0.012 4.012 16 C -0.584 4.584 17 H 0.083 0.917 18 C -0.199 4.199 19 N -0.572 5.572 20 Si 0.796 3.204 21 H -0.189 1.189 22 H -0.208 1.208 23 H -0.190 1.190 24 C 0.299 3.701 25 O -0.450 6.450 26 C -0.060 4.060 27 H 0.129 0.871 28 H 0.121 0.879 29 H 0.116 0.884 30 H 0.258 0.742 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.140 0.860 38 H 0.061 0.939 39 H 0.122 0.878 40 H 0.148 0.852 41 H 0.115 0.885 42 H 0.086 0.914 43 H 0.065 0.935 44 H 0.108 0.892 45 H 0.019 0.981 46 H -0.012 1.012 47 H 0.073 0.927 48 H 0.111 0.889 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -25.971 -3.141 13.989 29.666 hybrid contribution 1.022 -0.275 -0.591 1.212 sum -24.949 -3.416 13.398 28.524 Atomic orbital electron populations 1.21863 0.87532 1.06674 1.05861 1.21769 0.92576 0.82728 0.74127 1.90736 1.72358 1.33684 1.52278 1.45935 1.06609 1.09547 1.74630 1.21135 0.80468 0.97609 1.01055 1.22380 0.87708 0.94875 1.02952 1.64650 1.05445 1.11134 1.45252 1.22879 0.95126 0.89471 1.00625 1.22293 0.97285 0.92489 1.02361 1.21432 0.95458 0.97299 0.95958 1.22673 0.91782 1.05938 0.93650 1.22425 0.99232 1.00589 0.80735 1.48827 1.14258 1.57559 1.15254 1.21318 0.86315 0.94296 0.96011 1.19188 0.93450 0.94481 0.94059 1.21548 1.09280 0.94013 1.33592 0.91680 1.26048 1.01299 0.95658 0.96905 1.70114 1.36611 1.07184 1.43270 0.85347 0.78629 0.78466 0.77996 1.18886 1.20811 1.18957 1.21099 0.83284 0.78125 0.87605 1.90669 1.78381 1.55842 1.20104 1.22912 0.90953 0.97801 0.94316 0.87068 0.87930 0.88377 0.74163 0.92425 0.94204 0.89060 0.90917 0.91976 0.89636 0.85964 0.93878 0.87834 0.85232 0.88490 0.91379 0.93507 0.89196 0.98063 1.01162 0.92653 0.88897 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 10.39 71.24 0.74 -0.44 16 2 C 0.50 9.21 7.94 87.66 0.70 9.90 16 3 O -0.61 -18.95 17.10 -3.04 -0.05 -19.00 16 4 N -0.71 -9.81 5.56 -463.07 -2.57 -12.38 16 5 C 0.12 2.42 5.33 86.38 0.46 2.88 16 6 C 0.05 0.75 4.98 86.30 0.43 1.18 16 7 N -0.54 -12.66 5.36 -884.10 -4.74 -17.40 16 8 C 0.05 0.94 6.73 86.53 0.58 1.52 16 9 C -0.11 -2.35 6.16 31.14 0.19 -2.16 16 10 C -0.10 -2.46 0.73 -52.71 -0.04 -2.50 16 11 C -0.10 -1.73 6.26 31.31 0.20 -1.53 16 12 C 0.09 2.32 7.37 86.90 0.64 2.96 16 13 N -0.63 -23.88 2.95 -818.19 -2.41 -26.29 16 14 C 0.14 6.49 5.88 86.38 0.51 7.00 16 15 C 0.03 1.49 5.30 29.85 0.16 1.65 16 16 C -0.55 -32.53 9.11 25.60 0.23 -32.29 16 17 H 0.07 3.68 7.74 -2.91 -0.02 3.65 16 18 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 19 N -0.93 -58.83 13.29 21.45 0.28 -58.55 16 20 Si 0.97 45.76 29.54 68.60 2.03 47.78 16 21 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 22 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 24 C 0.51 20.30 6.68 87.42 0.58 20.88 16 25 O -0.57 -29.13 17.50 -3.03 -0.05 -29.19 16 26 C 0.07 1.52 4.06 86.16 0.35 1.87 16 27 H 0.11 0.02 7.91 -2.39 -0.02 0.00 16 28 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.42 2.16 8.31 -92.71 -0.77 1.39 16 31 H 0.06 1.25 7.20 -2.38 -0.02 1.24 16 32 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.07 0.67 7.95 -2.38 -0.02 0.65 16 35 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.09 1.05 7.65 -2.39 -0.02 1.03 16 37 H 0.12 1.64 7.44 -2.38 -0.02 1.62 16 38 H 0.04 1.28 7.85 -2.39 -0.02 1.27 16 39 H 0.10 1.36 7.95 -2.39 -0.02 1.34 16 40 H 0.13 1.21 7.45 -2.38 -0.02 1.19 16 41 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 42 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 43 H 0.05 2.31 7.96 -2.39 -0.02 2.30 16 44 H 0.09 3.59 8.14 -2.39 -0.02 3.57 16 45 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 46 H -0.03 -1.98 8.14 -2.38 -0.02 -2.00 16 47 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 48 H 0.09 1.33 7.92 -2.39 -0.02 1.31 16 49 H 0.06 1.64 7.71 -2.39 -0.02 1.62 16 Total: -1.00 -93.35 395.76 -1.17 -94.52 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 0.16 Total: 9.20 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 6.19 Total: 11.31 kcal Atomic # 7 Polarization: -105.18 SS G_CDS: -9.44 Total: -114.62 kcal Atomic # 8 Polarization: -48.08 SS G_CDS: -0.10 Total: -48.19 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -93.35 -1.17 -94.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274000077.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.252 kcal (2) G-P(sol) polarization free energy of solvation -93.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds