Wall clock time and date at job start Fri Apr 10 2020 18:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46935 * 2 1 4 4 N 1.46495 * 109.47113 * 120.00398 * 2 1 3 5 5 S 1.65599 * 119.99899 * 264.99895 * 4 2 1 6 6 O 1.42102 * 106.40487 * 311.46174 * 5 4 2 7 7 O 1.42107 * 106.39958 * 178.54058 * 5 4 2 8 8 C 1.76202 * 107.21632 * 65.00185 * 5 4 2 9 9 C 1.38379 * 119.92433 * 270.01973 * 8 5 4 10 10 C 1.38342 * 120.30369 * 180.02562 * 9 8 5 11 11 C 1.37972 * 120.15304 * 359.67043 * 10 9 8 12 12 C 1.39616 * 119.84009 * 0.60500 * 11 10 9 13 13 C 1.43205 * 120.14614 * 179.69727 * 12 11 10 14 14 N 7.43097 * 57.09080 * 93.87751 * 2 1 3 15 15 C 1.37927 * 119.92035 * 89.99880 * 8 5 4 16 16 C 1.50703 * 109.47185 * 240.00551 * 2 1 3 17 17 O 1.21204 * 119.99951 * 239.99804 * 16 2 1 18 18 O 1.34315 * 120.00069 * 59.99559 * 16 2 1 19 19 C 1.34920 * 117.00085 * 179.97438 * 18 16 2 20 20 H 1.07995 * 119.99963 * 0.02562 * 19 18 16 21 21 C 1.38750 * 119.99936 * 180.02562 * 19 18 16 22 22 N 1.31444 * 119.99788 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 120.00251 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.46760 * 89.99412 * 23 21 19 25 25 H 1.48497 * 109.46949 * 210.00044 * 23 21 19 26 26 H 1.48501 * 109.46927 * 329.99869 * 23 21 19 27 27 H 1.08993 * 109.47226 * 299.99858 * 1 2 3 28 28 H 1.09001 * 109.47203 * 60.00104 * 1 2 3 29 29 H 1.08998 * 109.46906 * 179.97438 * 1 2 3 30 30 H 0.97001 * 119.99617 * 85.00386 * 4 2 1 31 31 H 1.08001 * 119.84560 * 359.97438 * 9 8 5 32 32 H 1.08002 * 119.92181 * 180.02562 * 10 9 8 33 33 H 1.07990 * 120.07788 * 180.30317 * 11 10 9 34 34 H 1.07994 * 120.08375 * 0.02562 * 15 8 5 35 35 H 0.97002 * 119.99763 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 16 2.4122 0.1770 2.5504 6 8 3.2437 1.2442 2.1156 7 8 2.8124 -0.7700 3.5314 8 6 0.9275 0.9145 3.1474 9 6 0.5525 2.1697 2.7016 10 6 -0.6114 2.7563 3.1655 11 6 -1.4100 2.0896 4.0717 12 6 -1.0347 0.8254 4.5300 13 6 -1.8554 0.1302 5.4755 14 7 -2.5073 -0.4219 6.2243 15 6 0.1415 0.2391 4.0576 16 6 2.0324 -0.7103 -1.2305 17 8 2.7293 -1.6957 -1.1194 18 8 1.7079 -0.2514 -2.4504 19 6 2.1907 -0.9332 -3.5098 20 1 2.8078 -1.8058 -3.3547 21 6 1.8945 -0.5132 -4.7986 22 7 2.3645 -1.1778 -5.8307 23 14 0.8276 0.9966 -5.0671 24 1 1.6884 2.2046 -5.1376 25 1 0.0742 0.8505 -6.3383 26 1 -0.1276 1.1347 -3.9385 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 2.1110 -1.6562 1.1946 31 1 1.1717 2.6941 1.9889 32 1 -0.8984 3.7361 2.8131 33 1 -2.3208 2.5466 4.4293 34 1 0.4353 -0.7404 4.4048 35 1 2.1577 -0.8839 -6.7318 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767681005.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:19 Heat of formation + Delta-G solvation = -88.545805 kcal Electronic energy + Delta-G solvation = -24611.094003 eV Core-core repulsion = 20702.394795 eV Total energy + Delta-G solvation = -3908.699208 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.066 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.99663 -39.52716 -37.47165 -36.87682 -36.35178 -36.04063 -34.82509 -32.40384 -32.13043 -31.89688 -30.05870 -25.96327 -24.62734 -23.89934 -23.73157 -20.52129 -20.22785 -19.31970 -18.14906 -17.99123 -17.11863 -16.78406 -16.41549 -16.25296 -15.88357 -15.11581 -15.08881 -14.64089 -14.61224 -14.50551 -13.75695 -13.65204 -13.36382 -13.30535 -13.15620 -12.82020 -12.63863 -12.46336 -12.31684 -12.30069 -12.25044 -12.05247 -11.82388 -11.58936 -11.32091 -11.18506 -10.58413 -10.47059 -10.05747 -9.89296 -9.79645 -9.60512 -9.21857 -8.76574 -6.44860 -4.21598 -0.05217 0.17737 0.41675 2.19005 2.25850 2.75652 3.01465 3.17991 3.19462 3.25186 3.28590 3.29509 3.54696 3.86424 4.07548 4.16614 4.24387 4.32977 4.47966 4.76747 4.88586 4.94474 4.97033 5.13526 5.18133 5.21072 5.38682 5.51171 5.51673 5.59985 5.89347 6.05964 6.14247 6.30845 6.90284 6.99574 7.61500 7.95103 8.48898 8.91826 9.54007 10.63260 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.017347 B = 0.003561 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.723822 B = 7861.174918 C = 8506.545585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.164 3.836 3 H 0.119 0.881 4 N -1.095 6.095 5 S 2.699 3.301 6 O -0.947 6.947 7 O -0.951 6.951 8 C -0.678 4.678 9 C 0.009 3.991 10 C -0.136 4.136 11 C -0.018 4.018 12 C -0.048 4.048 13 C 0.253 3.747 14 N -0.407 5.407 15 C 0.032 3.968 16 C 0.406 3.594 17 O -0.529 6.529 18 O -0.244 6.244 19 C -0.383 4.383 20 H 0.111 0.889 21 C 0.067 3.933 22 N -0.871 5.871 23 Si 0.905 3.095 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.259 1.259 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.429 0.571 31 H 0.153 0.847 32 H 0.147 0.853 33 H 0.141 0.859 34 H 0.152 0.848 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.452 10.232 17.361 21.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.055 3.945 3 H 0.137 0.863 4 N -0.858 5.858 5 S 2.786 3.214 6 O -0.936 6.936 7 O -0.941 6.941 8 C -0.764 4.764 9 C -0.011 4.011 10 C -0.155 4.155 11 C -0.038 4.038 12 C -0.052 4.052 13 C -0.063 4.063 14 N -0.082 5.082 15 C 0.010 3.990 16 C 0.250 3.750 17 O -0.423 6.423 18 O -0.152 6.152 19 C -0.459 4.459 20 H 0.128 0.872 21 C -0.137 4.137 22 N -0.510 5.510 23 Si 0.730 3.270 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.183 1.183 27 H 0.083 0.917 28 H 0.105 0.895 29 H 0.090 0.910 30 H 0.267 0.733 31 H 0.170 0.830 32 H 0.165 0.835 33 H 0.159 0.841 34 H 0.169 0.831 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.480 9.372 18.660 22.537 hybrid contribution -0.871 0.485 -0.625 1.177 sum -9.351 9.857 18.035 22.580 Atomic orbital electron populations 1.22323 0.92772 1.04184 1.03556 1.20076 0.95293 0.96549 0.82592 0.86350 1.55295 1.83799 1.21080 1.25607 1.01873 0.73494 0.73505 0.72489 1.93623 1.62538 1.56197 1.81281 1.93616 1.80368 1.61678 1.58432 1.31166 1.24986 1.07619 1.12601 1.21318 0.94507 0.91421 0.93838 1.21294 0.94817 1.01235 0.98136 1.21535 0.98316 0.91498 0.92473 1.16010 0.95144 0.95360 0.98719 1.25532 0.93607 0.93834 0.93352 1.81292 1.08965 1.07972 1.09990 1.20949 0.89701 0.98555 0.89788 1.22613 0.82133 0.85231 0.85048 1.90609 1.37942 1.27022 1.86745 1.83478 1.64799 1.53041 1.13878 1.20653 1.31945 1.11803 0.81459 0.87169 1.24556 0.96996 0.98515 0.93655 1.69605 1.43266 1.39367 0.98735 0.86227 0.80653 0.81944 0.78169 1.19704 1.20755 1.18273 0.91670 0.89452 0.90980 0.73283 0.82960 0.83532 0.84079 0.83059 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 9.45 37.16 0.35 -1.56 16 2 C 0.16 2.35 3.42 -69.08 -0.24 2.11 16 3 H 0.12 1.44 7.50 -51.93 -0.39 1.06 16 4 N -1.10 -14.02 5.26 -5.88 -0.03 -14.05 16 5 S 2.70 31.37 5.72 -107.50 -0.61 30.76 16 6 O -0.95 -13.34 16.61 -57.17 -0.95 -14.29 16 7 O -0.95 -13.02 17.27 -57.17 -0.99 -14.01 16 8 C -0.68 -5.72 5.06 -39.64 -0.20 -5.92 16 9 C 0.01 0.06 8.57 -39.49 -0.34 -0.28 16 10 C -0.14 -0.64 10.03 -39.64 -0.40 -1.04 16 11 C -0.02 -0.09 9.76 -39.17 -0.38 -0.47 16 12 C -0.05 -0.34 5.73 -106.93 -0.61 -0.96 16 13 C 0.25 2.28 15.33 -22.47 -0.34 1.93 16 14 N -0.41 -4.67 18.54 41.83 0.78 -3.90 16 15 C 0.03 0.25 9.23 -39.17 -0.36 -0.11 16 16 C 0.41 8.61 7.27 36.01 0.26 8.87 16 17 O -0.53 -12.89 15.23 -19.05 -0.29 -13.18 16 18 O -0.24 -5.88 8.48 -20.71 -0.18 -6.06 16 19 C -0.38 -10.78 10.10 30.92 0.31 -10.47 16 20 H 0.11 3.45 7.09 -52.49 -0.37 3.08 16 21 C 0.07 1.83 5.49 -17.53 -0.10 1.74 16 22 N -0.87 -24.88 13.96 55.48 0.77 -24.10 16 23 Si 0.90 19.99 28.62 -169.99 -4.86 15.13 16 24 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 27 H 0.06 0.52 6.16 -51.93 -0.32 0.20 16 28 H 0.09 1.02 8.11 -51.93 -0.42 0.60 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.43 5.50 8.21 -34.47 -0.28 5.22 16 31 H 0.15 0.86 7.60 -52.49 -0.40 0.46 16 32 H 0.15 0.31 8.06 -52.49 -0.42 -0.11 16 33 H 0.14 0.38 8.06 -52.49 -0.42 -0.04 16 34 H 0.15 1.09 7.61 -52.49 -0.40 0.69 16 35 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 335.30 15.07 5.05 5.05 Total: -1.00 -36.08 335.30 -6.34 -42.42 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -2.99 Total: 2.39 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -2.04 Total: -6.16 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 1.52 Total: -42.05 kcal Atomic # 8 Polarization: -45.14 SS G_CDS: -2.40 Total: -47.54 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.86 Total: 15.13 kcal Atomic # 16 Polarization: 31.37 SS G_CDS: -0.61 Total: 30.76 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -36.08 -6.34 -42.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767681005.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.125 kcal (2) G-P(sol) polarization free energy of solvation -36.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds