Wall clock time and date at job start Fri Apr 10 2020 18:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46935 * 2 1 4 4 N 1.46495 * 109.47113 * 120.00398 * 2 1 3 5 5 S 1.65599 * 119.99899 * 264.99895 * 4 2 1 6 6 O 1.42102 * 106.40487 * 311.46174 * 5 4 2 7 7 O 1.42107 * 106.39958 * 178.54058 * 5 4 2 8 8 C 1.76202 * 107.21632 * 65.00185 * 5 4 2 9 9 C 1.38379 * 119.92433 * 270.01973 * 8 5 4 10 10 C 1.38342 * 120.30369 * 180.02562 * 9 8 5 11 11 C 1.37972 * 120.15304 * 359.67043 * 10 9 8 12 12 C 1.39616 * 119.84009 * 0.60500 * 11 10 9 13 13 C 1.43205 * 120.14614 * 179.69727 * 12 11 10 14 14 N 7.43097 * 57.09080 * 93.87751 * 2 1 3 15 15 C 1.37927 * 119.92035 * 89.99880 * 8 5 4 16 16 C 1.50703 * 109.47185 * 240.00551 * 2 1 3 17 17 O 1.21204 * 119.99951 * 239.99804 * 16 2 1 18 18 O 1.34315 * 120.00069 * 59.99559 * 16 2 1 19 19 C 1.34920 * 117.00085 * 179.97438 * 18 16 2 20 20 H 1.07995 * 119.99963 * 0.02562 * 19 18 16 21 21 C 1.38750 * 119.99936 * 180.02562 * 19 18 16 22 22 N 1.31444 * 119.99788 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 120.00251 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.46760 * 89.99412 * 23 21 19 25 25 H 1.48497 * 109.46949 * 210.00044 * 23 21 19 26 26 H 1.48501 * 109.46927 * 329.99869 * 23 21 19 27 27 H 1.08993 * 109.47226 * 299.99858 * 1 2 3 28 28 H 1.09001 * 109.47203 * 60.00104 * 1 2 3 29 29 H 1.08998 * 109.46906 * 179.97438 * 1 2 3 30 30 H 0.97001 * 119.99617 * 85.00386 * 4 2 1 31 31 H 1.08001 * 119.84560 * 359.97438 * 9 8 5 32 32 H 1.08002 * 119.92181 * 180.02562 * 10 9 8 33 33 H 1.07990 * 120.07788 * 180.30317 * 11 10 9 34 34 H 1.07994 * 120.08375 * 0.02562 * 15 8 5 35 35 H 0.97002 * 119.99763 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 16 2.4122 0.1770 2.5504 6 8 3.2437 1.2442 2.1156 7 8 2.8124 -0.7700 3.5314 8 6 0.9275 0.9145 3.1474 9 6 0.5525 2.1697 2.7016 10 6 -0.6114 2.7563 3.1655 11 6 -1.4100 2.0896 4.0717 12 6 -1.0347 0.8254 4.5300 13 6 -1.8554 0.1302 5.4755 14 7 -2.5073 -0.4219 6.2243 15 6 0.1415 0.2391 4.0576 16 6 2.0324 -0.7103 -1.2305 17 8 2.7293 -1.6957 -1.1194 18 8 1.7079 -0.2514 -2.4504 19 6 2.1907 -0.9332 -3.5098 20 1 2.8078 -1.8058 -3.3547 21 6 1.8945 -0.5132 -4.7986 22 7 2.3645 -1.1778 -5.8307 23 14 0.8276 0.9966 -5.0671 24 1 1.6884 2.2046 -5.1376 25 1 0.0742 0.8505 -6.3383 26 1 -0.1276 1.1347 -3.9385 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 2.1110 -1.6562 1.1946 31 1 1.1717 2.6941 1.9889 32 1 -0.8984 3.7361 2.8131 33 1 -2.3208 2.5466 4.4293 34 1 0.4353 -0.7404 4.4048 35 1 2.1577 -0.8839 -6.7318 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767681005.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:19 Heat of formation + Delta-G solvation = -115.983966 kcal Electronic energy + Delta-G solvation = -24612.283811 eV Core-core repulsion = 20702.394795 eV Total energy + Delta-G solvation = -3909.889016 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.066 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.30551 -40.51101 -38.50766 -37.89049 -37.60336 -37.05999 -36.38158 -34.47240 -32.69243 -32.38694 -31.13175 -27.83024 -25.23951 -25.14360 -24.37923 -21.82142 -21.21512 -20.24426 -20.15353 -19.18915 -18.04132 -17.79455 -17.52050 -17.08326 -16.87847 -16.75064 -16.35201 -15.94013 -15.28584 -15.24980 -15.03701 -14.59541 -14.50202 -14.30610 -14.09884 -14.01073 -13.83296 -13.43593 -13.35249 -13.31775 -13.25774 -13.13669 -12.95402 -12.65662 -12.60014 -12.35055 -12.19538 -11.90277 -11.79999 -11.19818 -10.79767 -10.76570 -10.50786 -10.11558 -8.50833 -6.39039 -0.83636 -0.46159 -0.12820 1.30520 1.40793 1.50838 1.56554 1.61395 1.65247 1.86782 2.31513 2.37404 2.54081 2.67277 2.74635 2.95531 3.24317 3.70770 3.77703 3.95631 3.98421 4.00303 4.09757 4.28666 4.41789 4.45676 4.75046 4.81405 4.88959 5.02275 5.11153 5.17856 5.29027 5.50162 5.64259 5.80247 5.92988 6.33868 6.53875 6.84543 7.56185 8.61859 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.017347 B = 0.003561 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.723822 B = 7861.174918 C = 8506.545585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.172 3.828 3 H 0.148 0.852 4 N -1.102 6.102 5 S 2.710 3.290 6 O -0.975 6.975 7 O -0.979 6.979 8 C -0.678 4.678 9 C 0.004 3.996 10 C -0.122 4.122 11 C 0.000 4.000 12 C -0.056 4.056 13 C 0.277 3.723 14 N -0.458 5.458 15 C 0.026 3.974 16 C 0.405 3.595 17 O -0.568 6.568 18 O -0.245 6.245 19 C -0.408 4.408 20 H 0.055 0.945 21 C 0.013 3.987 22 N -0.920 5.920 23 Si 0.983 3.017 24 H -0.260 1.260 25 H -0.272 1.272 26 H -0.233 1.233 27 H 0.106 0.894 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.427 0.573 31 H 0.166 0.834 32 H 0.185 0.815 33 H 0.172 0.828 34 H 0.149 0.851 35 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.285 14.113 18.338 25.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.063 3.937 3 H 0.165 0.835 4 N -0.863 5.863 5 S 2.803 3.197 6 O -0.965 6.965 7 O -0.969 6.969 8 C -0.768 4.768 9 C -0.015 4.015 10 C -0.140 4.140 11 C -0.020 4.020 12 C -0.061 4.061 13 C -0.038 4.038 14 N -0.133 5.133 15 C 0.004 3.996 16 C 0.250 3.750 17 O -0.463 6.463 18 O -0.153 6.153 19 C -0.484 4.484 20 H 0.073 0.927 21 C -0.186 4.186 22 N -0.560 5.560 23 Si 0.802 3.198 24 H -0.185 1.185 25 H -0.197 1.197 26 H -0.155 1.155 27 H 0.124 0.876 28 H 0.109 0.891 29 H 0.085 0.915 30 H 0.264 0.736 31 H 0.184 0.816 32 H 0.202 0.798 33 H 0.189 0.811 34 H 0.166 0.834 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.256 13.211 19.640 26.210 hybrid contribution 0.068 -0.765 -0.788 1.100 sum -11.187 12.446 18.853 25.209 Atomic orbital electron populations 1.22372 0.89664 1.04654 1.05724 1.20328 0.97508 0.96681 0.79162 0.83510 1.55378 1.84158 1.21052 1.25682 1.01177 0.74229 0.72663 0.71644 1.93582 1.64657 1.56594 1.81634 1.93578 1.81717 1.62802 1.58842 1.30430 1.23585 1.08713 1.14075 1.21659 0.95432 0.90500 0.93958 1.21682 0.93239 1.02256 0.96837 1.21941 0.98976 0.90010 0.91070 1.16037 0.94716 0.96372 0.98959 1.25774 0.92674 0.92760 0.92598 1.81320 1.10781 1.09470 1.11757 1.20949 0.90078 0.98727 0.89872 1.24285 0.80149 0.84597 0.85967 1.90596 1.39360 1.29007 1.87336 1.83487 1.65227 1.52645 1.13981 1.20288 1.33005 1.11505 0.83637 0.92728 1.25662 0.98148 1.02280 0.92546 1.69721 1.44921 1.41699 0.99639 0.85082 0.78878 0.76689 0.79173 1.18457 1.19700 1.15537 0.87555 0.89102 0.91526 0.73637 0.81620 0.79813 0.81097 0.83378 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.19 9.45 71.98 0.68 -2.51 16 2 C 0.17 4.64 3.42 44.25 0.15 4.79 16 3 H 0.15 3.16 7.50 -2.39 -0.02 3.14 16 4 N -1.10 -27.62 5.26 -172.52 -0.91 -28.52 16 5 S 2.71 60.51 5.72 -56.49 -0.32 60.19 16 6 O -0.97 -26.39 16.61 -128.00 -2.13 -28.52 16 7 O -0.98 -27.05 17.27 -128.00 -2.21 -29.26 16 8 C -0.68 -9.51 5.06 22.23 0.11 -9.40 16 9 C 0.00 0.04 8.57 22.33 0.19 0.23 16 10 C -0.12 -0.41 10.03 22.23 0.22 -0.19 16 11 C 0.00 0.00 9.76 22.54 0.22 0.22 16 12 C -0.06 -0.61 5.73 -21.36 -0.12 -0.74 16 13 C 0.28 4.43 15.33 88.33 1.35 5.79 16 14 N -0.46 -10.04 18.54 19.00 0.35 -9.68 16 15 C 0.03 0.35 9.23 22.54 0.21 0.55 16 16 C 0.40 17.38 7.27 71.24 0.52 17.89 16 17 O -0.57 -29.05 15.23 20.79 0.32 -28.73 16 18 O -0.25 -11.87 8.48 14.83 0.13 -11.75 16 19 C -0.41 -23.97 10.10 67.94 0.69 -23.28 16 20 H 0.05 3.71 7.09 -2.91 -0.02 3.69 16 21 C 0.01 0.74 5.49 84.87 0.47 1.21 16 22 N -0.92 -54.26 13.96 21.62 0.30 -53.96 16 23 Si 0.98 40.09 28.62 68.60 1.96 42.05 16 24 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 25 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 26 H -0.23 -8.45 7.11 99.48 0.71 -7.74 16 27 H 0.11 1.18 6.16 -2.39 -0.01 1.17 16 28 H 0.09 1.76 8.11 -2.39 -0.02 1.74 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.43 11.24 8.21 -96.74 -0.79 10.45 16 31 H 0.17 1.05 7.60 -2.91 -0.02 1.03 16 32 H 0.18 -0.62 8.06 -2.91 -0.02 -0.64 16 33 H 0.17 -0.14 8.06 -2.92 -0.02 -0.17 16 34 H 0.15 2.01 7.61 -2.91 -0.02 1.99 16 35 H 0.29 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -84.82 335.30 2.55 -82.26 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.37 Total: 11.36 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: 4.69 Total: -5.43 kcal Atomic # 7 Polarization: -91.92 SS G_CDS: -0.25 Total: -92.17 kcal Atomic # 8 Polarization: -94.36 SS G_CDS: -3.89 Total: -98.26 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 1.96 Total: 42.05 kcal Atomic # 16 Polarization: 60.51 SS G_CDS: -0.32 Total: 60.19 kcal Total: -84.82 2.55 -82.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767681005.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.720 kcal (2) G-P(sol) polarization free energy of solvation -84.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds