Wall clock time and date at job start Fri Apr 10 2020 18:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47326 * 2 1 4 4 N 1.46506 * 109.46691 * 239.99750 * 2 1 3 5 5 S 1.65597 * 119.99791 * 95.00526 * 4 2 1 6 6 O 1.42102 * 106.40060 * 178.54054 * 5 4 2 7 7 O 1.42101 * 106.40207 * 311.45359 * 5 4 2 8 8 C 1.76196 * 107.22133 * 64.99502 * 5 4 2 9 9 C 1.38376 * 119.92576 * 269.72481 * 8 5 4 10 10 C 1.38344 * 120.30705 * 179.76567 * 9 8 5 11 11 C 1.37972 * 120.14997 * 0.50607 * 10 9 8 12 12 C 1.39617 * 119.84238 * 359.75257 * 11 10 9 13 13 C 1.43200 * 120.14747 * 179.97438 * 12 11 10 14 14 N 7.43158 * 161.05805 * 285.52986 * 2 1 3 15 15 C 1.37926 * 119.92055 * 89.99957 * 8 5 4 16 16 C 1.50699 * 109.47095 * 120.00257 * 2 1 3 17 17 O 1.21207 * 120.00280 * 119.99635 * 16 2 1 18 18 O 1.34316 * 119.99557 * 299.99472 * 16 2 1 19 19 C 1.34923 * 116.99502 * 180.02562 * 18 16 2 20 20 H 1.07997 * 120.00203 * 359.97438 * 19 18 16 21 21 C 1.38753 * 119.99838 * 180.02562 * 19 18 16 22 22 N 1.31441 * 120.00094 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00208 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47221 * 89.99132 * 23 21 19 25 25 H 1.48494 * 109.46927 * 209.99557 * 23 21 19 26 26 H 1.48505 * 109.46637 * 329.99392 * 23 21 19 27 27 H 1.09002 * 109.46832 * 300.00229 * 1 2 3 28 28 H 1.09001 * 109.47659 * 59.99680 * 1 2 3 29 29 H 1.08995 * 109.47574 * 180.02562 * 1 2 3 30 30 H 0.96995 * 120.00050 * 274.72611 * 4 2 1 31 31 H 1.08003 * 119.85269 * 359.97438 * 9 8 5 32 32 H 1.08004 * 119.92584 * 180.25885 * 10 9 8 33 33 H 1.08000 * 120.08049 * 179.76816 * 11 10 9 34 34 H 1.07994 * 120.08296 * 359.95774 * 15 8 5 35 35 H 0.96999 * 120.00080 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 -1.1962 5 16 2.4121 0.1771 -2.5505 6 8 2.8774 -0.7637 -3.5085 7 8 1.3246 1.0592 -2.7922 8 6 3.7927 1.1908 -2.1372 9 6 3.5885 2.4648 -1.6370 10 6 4.6667 3.2657 -1.3054 11 6 5.9543 2.8023 -1.4815 12 6 6.1676 1.5199 -1.9908 13 6 7.5012 1.0325 -2.1767 14 7 8.5591 0.6459 -2.3243 15 6 5.0745 0.7149 -2.3185 16 6 2.0323 -0.7105 1.2304 17 8 2.7291 -1.6960 1.1192 18 8 1.7078 -0.2515 2.4503 19 6 2.1907 -0.9335 3.5096 20 1 2.8076 -1.8062 3.3544 21 6 1.8937 -0.5142 4.7985 22 7 1.1424 0.5476 4.9875 23 14 2.5616 -1.4588 6.2653 24 1 3.8815 -0.9006 6.6541 25 1 1.6171 -1.3362 7.4046 26 1 2.7169 -2.8905 5.9028 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 2.1146 -1.6559 -1.1936 31 1 2.5828 2.8344 -1.5016 32 1 4.5002 4.2574 -0.9115 33 1 6.7952 3.4298 -1.2257 34 1 5.2325 -0.2781 -2.7125 35 1 0.9350 0.8410 5.8885 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767681006.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:21 Heat of formation + Delta-G solvation = -93.053074 kcal Electronic energy + Delta-G solvation = -24709.945882 eV Core-core repulsion = 20801.051225 eV Total energy + Delta-G solvation = -3908.894658 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.066 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.78436 -39.33705 -37.38348 -36.68969 -36.16398 -35.96198 -34.64488 -32.27712 -31.94496 -31.70791 -29.84711 -25.75277 -24.45173 -23.85066 -23.61469 -20.41155 -20.32089 -19.17701 -17.96802 -17.79560 -16.93143 -16.65607 -16.31541 -16.16010 -15.76476 -14.93742 -14.79043 -14.48881 -14.42729 -14.38308 -14.01392 -13.49817 -13.18549 -13.12126 -12.87426 -12.76373 -12.58895 -12.28166 -12.22192 -12.16165 -11.90405 -11.80712 -11.55030 -11.35539 -11.24589 -11.10664 -10.54623 -10.50519 -9.95456 -9.90283 -9.73170 -9.41278 -9.07974 -8.68856 -6.52646 -4.20747 0.11730 0.33638 0.61057 2.36214 2.43590 2.83140 3.00866 3.13423 3.18534 3.33711 3.35041 3.48104 3.64069 3.83960 4.18171 4.37583 4.41282 4.50371 4.64414 4.92076 4.96555 5.05977 5.10878 5.33648 5.36752 5.41621 5.56087 5.69739 5.78219 5.94913 6.18109 6.25341 6.44232 6.65169 7.00616 7.17178 7.28462 7.82061 8.54312 8.96197 9.68189 10.64497 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.011803 B = 0.004229 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.799497 B = 6620.140165 C = 7834.403121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.172 3.828 3 H 0.105 0.895 4 N -1.094 6.094 5 S 2.700 3.300 6 O -0.955 6.955 7 O -0.947 6.947 8 C -0.681 4.681 9 C 0.007 3.993 10 C -0.136 4.136 11 C -0.017 4.017 12 C -0.049 4.049 13 C 0.255 3.745 14 N -0.409 5.409 15 C 0.034 3.966 16 C 0.389 3.611 17 O -0.547 6.547 18 O -0.206 6.206 19 C -0.384 4.384 20 H 0.097 0.903 21 C 0.045 3.955 22 N -0.861 5.861 23 Si 0.943 3.057 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.266 1.266 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.428 0.572 31 H 0.153 0.847 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.151 0.849 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.118 6.828 -11.969 13.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.063 3.937 3 H 0.123 0.877 4 N -0.856 5.856 5 S 2.787 3.213 6 O -0.945 6.945 7 O -0.937 6.937 8 C -0.767 4.767 9 C -0.013 4.013 10 C -0.154 4.154 11 C -0.037 4.037 12 C -0.053 4.053 13 C -0.061 4.061 14 N -0.084 5.084 15 C 0.012 3.988 16 C 0.233 3.767 17 O -0.444 6.444 18 O -0.112 6.112 19 C -0.460 4.460 20 H 0.114 0.886 21 C -0.160 4.160 22 N -0.497 5.497 23 Si 0.767 3.233 24 H -0.199 1.199 25 H -0.202 1.202 26 H -0.191 1.191 27 H 0.106 0.894 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.265 0.735 31 H 0.170 0.830 32 H 0.165 0.835 33 H 0.160 0.840 34 H 0.169 0.831 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.420 6.263 -12.808 14.662 hybrid contribution 0.678 -0.406 1.397 1.605 sum 4.098 5.857 -11.410 13.465 Atomic orbital electron populations 1.22240 0.92082 1.03744 1.04260 1.19992 0.96230 0.95266 0.82163 0.87681 1.55386 1.81005 1.20410 1.28813 1.01860 0.73727 0.73254 0.72428 1.93606 1.82054 1.61426 1.57430 1.93611 1.50225 1.66450 1.83427 1.31122 1.16370 1.11378 1.17812 1.21308 1.01086 0.90700 0.88176 1.21296 0.91629 1.01299 1.01210 1.21534 0.98427 0.92844 0.90941 1.16011 0.85912 0.95961 1.07402 1.25514 0.92660 0.93992 0.93919 1.81268 1.11336 1.07367 1.08442 1.20934 0.89714 0.98756 0.89415 1.23019 0.82167 0.85375 0.86098 1.90561 1.39125 1.27606 1.87150 1.83852 1.63200 1.51603 1.12495 1.21233 1.31895 1.11156 0.81705 0.88584 1.25324 0.96206 0.96500 0.97930 1.69975 1.34212 1.22686 1.22843 0.85685 0.78567 0.79654 0.79393 1.19869 1.20237 1.19069 0.89439 0.90463 0.91605 0.73457 0.82972 0.83488 0.84037 0.83132 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.45 37.16 0.35 -2.02 16 2 C 0.17 2.72 3.29 -69.08 -0.23 2.49 16 3 H 0.11 1.39 7.24 -51.93 -0.38 1.01 16 4 N -1.09 -15.05 5.27 -5.88 -0.03 -15.08 16 5 S 2.70 33.46 5.65 -107.50 -0.61 32.86 16 6 O -0.95 -13.71 17.27 -57.17 -0.99 -14.70 16 7 O -0.95 -12.75 16.53 -57.17 -0.94 -13.69 16 8 C -0.68 -7.56 5.81 -39.64 -0.23 -7.79 16 9 C 0.01 0.07 8.91 -39.49 -0.35 -0.29 16 10 C -0.14 -1.06 10.03 -39.64 -0.40 -1.46 16 11 C -0.02 -0.14 9.76 -39.16 -0.38 -0.52 16 12 C -0.05 -0.50 5.73 -106.93 -0.61 -1.11 16 13 C 0.25 3.02 15.33 -22.47 -0.34 2.67 16 14 N -0.41 -5.71 18.54 41.84 0.78 -4.93 16 15 C 0.03 0.37 9.23 -39.17 -0.36 0.01 16 16 C 0.39 8.52 7.27 36.01 0.26 8.78 16 17 O -0.55 -13.17 15.22 -19.05 -0.29 -13.46 16 18 O -0.21 -5.33 9.65 -20.72 -0.20 -5.53 16 19 C -0.38 -10.60 9.65 30.92 0.30 -10.30 16 20 H 0.10 2.69 6.86 -52.49 -0.36 2.33 16 21 C 0.05 1.20 5.49 -17.53 -0.10 1.10 16 22 N -0.86 -23.61 13.67 55.48 0.76 -22.85 16 23 Si 0.94 20.27 29.55 -169.99 -5.02 15.24 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 26 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 27 H 0.09 1.33 8.11 -51.93 -0.42 0.91 16 28 H 0.08 0.96 7.64 -51.93 -0.40 0.56 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.43 5.84 8.20 -34.47 -0.28 5.56 16 31 H 0.15 1.17 7.60 -52.48 -0.40 0.77 16 32 H 0.15 0.73 8.06 -52.48 -0.42 0.30 16 33 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 34 H 0.15 1.54 7.61 -52.49 -0.40 1.14 16 35 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 338.43 15.07 5.10 5.10 Total: -1.00 -34.87 338.43 -6.58 -41.45 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -3.04 Total: 4.01 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -2.09 Total: -8.42 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 1.50 Total: -42.86 kcal Atomic # 8 Polarization: -44.96 SS G_CDS: -2.42 Total: -47.38 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 33.46 SS G_CDS: -0.61 Total: 32.86 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.87 -6.58 -41.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767681006.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.602 kcal (2) G-P(sol) polarization free energy of solvation -34.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds