Wall clock time and date at job start Fri Apr 10 2020 18:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47326 * 2 1 4 4 N 1.46506 * 109.46691 * 239.99750 * 2 1 3 5 5 S 1.65597 * 119.99791 * 95.00526 * 4 2 1 6 6 O 1.42102 * 106.40060 * 178.54054 * 5 4 2 7 7 O 1.42101 * 106.40207 * 311.45359 * 5 4 2 8 8 C 1.76196 * 107.22133 * 64.99502 * 5 4 2 9 9 C 1.38376 * 119.92576 * 269.72481 * 8 5 4 10 10 C 1.38344 * 120.30705 * 179.76567 * 9 8 5 11 11 C 1.37972 * 120.14997 * 0.50607 * 10 9 8 12 12 C 1.39617 * 119.84238 * 359.75257 * 11 10 9 13 13 C 1.43200 * 120.14747 * 179.97438 * 12 11 10 14 14 N 7.43158 * 161.05805 * 285.52986 * 2 1 3 15 15 C 1.37926 * 119.92055 * 89.99957 * 8 5 4 16 16 C 1.50699 * 109.47095 * 120.00257 * 2 1 3 17 17 O 1.21207 * 120.00280 * 119.99635 * 16 2 1 18 18 O 1.34316 * 119.99557 * 299.99472 * 16 2 1 19 19 C 1.34923 * 116.99502 * 180.02562 * 18 16 2 20 20 H 1.07997 * 120.00203 * 359.97438 * 19 18 16 21 21 C 1.38753 * 119.99838 * 180.02562 * 19 18 16 22 22 N 1.31441 * 120.00094 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00208 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47221 * 89.99132 * 23 21 19 25 25 H 1.48494 * 109.46927 * 209.99557 * 23 21 19 26 26 H 1.48505 * 109.46637 * 329.99392 * 23 21 19 27 27 H 1.09002 * 109.46832 * 300.00229 * 1 2 3 28 28 H 1.09001 * 109.47659 * 59.99680 * 1 2 3 29 29 H 1.08995 * 109.47574 * 180.02562 * 1 2 3 30 30 H 0.96995 * 120.00050 * 274.72611 * 4 2 1 31 31 H 1.08003 * 119.85269 * 359.97438 * 9 8 5 32 32 H 1.08004 * 119.92584 * 180.25885 * 10 9 8 33 33 H 1.08000 * 120.08049 * 179.76816 * 11 10 9 34 34 H 1.07994 * 120.08296 * 359.95774 * 15 8 5 35 35 H 0.96999 * 120.00080 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 -1.1962 5 16 2.4121 0.1771 -2.5505 6 8 2.8774 -0.7637 -3.5085 7 8 1.3246 1.0592 -2.7922 8 6 3.7927 1.1908 -2.1372 9 6 3.5885 2.4648 -1.6370 10 6 4.6667 3.2657 -1.3054 11 6 5.9543 2.8023 -1.4815 12 6 6.1676 1.5199 -1.9908 13 6 7.5012 1.0325 -2.1767 14 7 8.5591 0.6459 -2.3243 15 6 5.0745 0.7149 -2.3185 16 6 2.0323 -0.7105 1.2304 17 8 2.7291 -1.6960 1.1192 18 8 1.7078 -0.2515 2.4503 19 6 2.1907 -0.9335 3.5096 20 1 2.8076 -1.8062 3.3544 21 6 1.8937 -0.5142 4.7985 22 7 1.1424 0.5476 4.9875 23 14 2.5616 -1.4588 6.2653 24 1 3.8815 -0.9006 6.6541 25 1 1.6171 -1.3362 7.4046 26 1 2.7169 -2.8905 5.9028 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 2.1146 -1.6559 -1.1936 31 1 2.5828 2.8344 -1.5016 32 1 4.5002 4.2574 -0.9115 33 1 6.7952 3.4298 -1.2257 34 1 5.2325 -0.2781 -2.7125 35 1 0.9350 0.8410 5.8885 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767681006.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:21 Heat of formation + Delta-G solvation = -117.920050 kcal Electronic energy + Delta-G solvation = -24711.024195 eV Core-core repulsion = 20801.051225 eV Total energy + Delta-G solvation = -3909.972971 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.066 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.13862 -40.53272 -38.47256 -37.75556 -37.65314 -37.03444 -36.25741 -34.26926 -32.72986 -32.44068 -31.07285 -27.65074 -25.34005 -25.20543 -24.44398 -21.96775 -21.24898 -20.23787 -19.82152 -19.11931 -18.00402 -17.74430 -17.56667 -17.12876 -16.89294 -16.60748 -16.25107 -16.01022 -15.50005 -15.29506 -15.11324 -14.58780 -14.37379 -14.31109 -14.07044 -13.75319 -13.62975 -13.52009 -13.40380 -13.29041 -13.22132 -13.05567 -12.77142 -12.68766 -12.64164 -12.35138 -12.16641 -11.99213 -11.95085 -11.12204 -10.72991 -10.65908 -10.55672 -10.17798 -8.50902 -6.29372 -0.80020 -0.50326 -0.17674 1.30435 1.37183 1.42935 1.51937 1.59018 1.63239 1.79676 2.15584 2.46418 2.61944 2.68275 2.77056 3.00847 3.24279 3.65064 3.74964 3.89620 3.94323 4.07758 4.11166 4.29956 4.37903 4.62194 4.67598 4.81478 4.94631 5.02817 5.06466 5.10606 5.21720 5.34440 5.58663 5.83568 5.86114 6.25545 6.66500 6.95161 7.76121 8.68504 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.011803 B = 0.004229 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.799497 B = 6620.140165 C = 7834.403121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.180 3.820 3 H 0.136 0.864 4 N -1.097 6.097 5 S 2.718 3.282 6 O -0.977 6.977 7 O -0.955 6.955 8 C -0.692 4.692 9 C 0.000 4.000 10 C -0.129 4.129 11 C -0.006 4.006 12 C -0.062 4.062 13 C 0.276 3.724 14 N -0.453 5.453 15 C 0.019 3.981 16 C 0.391 3.609 17 O -0.572 6.572 18 O -0.231 6.231 19 C -0.418 4.418 20 H 0.080 0.920 21 C 0.004 3.996 22 N -0.894 5.894 23 Si 1.008 2.992 24 H -0.263 1.263 25 H -0.262 1.262 26 H -0.267 1.267 27 H 0.078 0.922 28 H 0.103 0.897 29 H 0.062 0.938 30 H 0.427 0.573 31 H 0.172 0.828 32 H 0.184 0.816 33 H 0.172 0.828 34 H 0.148 0.852 35 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.054 8.512 -11.639 14.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.071 3.929 3 H 0.154 0.846 4 N -0.857 5.857 5 S 2.809 3.191 6 O -0.967 6.967 7 O -0.945 6.945 8 C -0.780 4.780 9 C -0.020 4.020 10 C -0.147 4.147 11 C -0.026 4.026 12 C -0.067 4.067 13 C -0.039 4.039 14 N -0.128 5.128 15 C -0.003 4.003 16 C 0.237 3.763 17 O -0.469 6.469 18 O -0.138 6.138 19 C -0.494 4.494 20 H 0.098 0.902 21 C -0.198 4.198 22 N -0.531 5.531 23 Si 0.828 3.172 24 H -0.187 1.187 25 H -0.186 1.186 26 H -0.192 1.192 27 H 0.097 0.903 28 H 0.122 0.878 29 H 0.081 0.919 30 H 0.264 0.736 31 H 0.189 0.811 32 H 0.201 0.799 33 H 0.189 0.811 34 H 0.166 0.834 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.326 7.934 -12.508 15.181 hybrid contribution 0.704 -0.877 1.172 1.624 sum 4.030 7.056 -11.337 13.948 Atomic orbital electron populations 1.22256 0.90772 1.03943 1.05105 1.20102 0.97127 0.95965 0.79694 0.84620 1.55442 1.81430 1.20579 1.28248 1.01163 0.73629 0.72737 0.71595 1.93577 1.82451 1.62567 1.58124 1.93591 1.51143 1.66313 1.83461 1.30812 1.15306 1.12144 1.19735 1.21717 1.02809 0.90058 0.87394 1.21742 0.90689 1.02448 0.99839 1.21949 0.99870 0.91880 0.88945 1.16108 0.84704 0.97100 1.08739 1.25732 0.92639 0.92882 0.92633 1.81283 1.12706 1.08702 1.10154 1.21004 0.90178 0.99091 0.89997 1.24269 0.80522 0.84862 0.86634 1.90538 1.39950 1.28849 1.87580 1.83874 1.64204 1.52206 1.13495 1.21336 1.33246 1.11698 0.83121 0.90199 1.26328 0.96015 0.97271 1.00151 1.70039 1.35110 1.23916 1.24027 0.84745 0.78536 0.78017 0.75886 1.18736 1.18588 1.19177 0.90276 0.87817 0.91878 0.73606 0.81098 0.79869 0.81091 0.83428 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.45 9.45 71.98 0.68 -3.77 16 2 C 0.18 5.48 3.29 44.24 0.15 5.63 16 3 H 0.14 3.29 7.24 -2.39 -0.02 3.27 16 4 N -1.10 -29.32 5.27 -172.52 -0.91 -30.23 16 5 S 2.72 64.33 5.65 -56.49 -0.32 64.01 16 6 O -0.98 -27.78 17.27 -128.00 -2.21 -29.99 16 7 O -0.95 -23.78 16.53 -128.00 -2.12 -25.90 16 8 C -0.69 -14.24 5.81 22.23 0.13 -14.11 16 9 C 0.00 0.00 8.91 22.33 0.20 0.20 16 10 C -0.13 -1.51 10.03 22.23 0.22 -1.28 16 11 C -0.01 -0.08 9.76 22.54 0.22 0.14 16 12 C -0.06 -1.19 5.73 -21.36 -0.12 -1.31 16 13 C 0.28 6.38 15.33 88.33 1.35 7.74 16 14 N -0.45 -12.64 18.54 19.00 0.35 -12.29 16 15 C 0.02 0.41 9.23 22.54 0.21 0.62 16 16 C 0.39 17.25 7.27 71.24 0.52 17.77 16 17 O -0.57 -28.00 15.22 20.78 0.32 -27.68 16 18 O -0.23 -12.15 9.65 14.79 0.14 -12.01 16 19 C -0.42 -23.55 9.65 67.94 0.66 -22.89 16 20 H 0.08 4.62 6.86 -2.91 -0.02 4.60 16 21 C 0.00 0.20 5.49 84.87 0.47 0.67 16 22 N -0.89 -49.04 13.67 21.62 0.30 -48.74 16 23 Si 1.01 41.15 29.55 68.60 2.03 43.17 16 24 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 25 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 26 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 27 H 0.08 2.33 8.11 -2.39 -0.02 2.31 16 28 H 0.10 2.32 7.64 -2.39 -0.02 2.30 16 29 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.43 11.68 8.20 -96.75 -0.79 10.88 16 31 H 0.17 2.01 7.60 -2.91 -0.02 1.98 16 32 H 0.18 0.84 8.06 -2.91 -0.02 0.82 16 33 H 0.17 1.22 8.06 -2.91 -0.02 1.19 16 34 H 0.15 3.09 7.61 -2.91 -0.02 3.06 16 35 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -76.44 338.43 2.63 -73.81 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.37 Total: 16.46 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: 4.68 Total: -10.62 kcal Atomic # 7 Polarization: -91.00 SS G_CDS: -0.26 Total: -91.26 kcal Atomic # 8 Polarization: -91.72 SS G_CDS: -3.87 Total: -95.58 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.17 kcal Atomic # 16 Polarization: 64.33 SS G_CDS: -0.32 Total: 64.01 kcal Total: -76.44 2.63 -73.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767681006.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.106 kcal (2) G-P(sol) polarization free energy of solvation -76.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds