Wall clock time and date at job start Fri Apr 10 2020 18:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86794 * 119.99896 * 2 1 4 4 H 1.48505 * 109.47073 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47218 * 300.00114 * 3 2 1 6 6 H 1.48493 * 109.47002 * 60.00489 * 3 2 1 7 7 C 1.38954 * 119.99747 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99671 * 179.97438 * 7 2 1 9 9 N 1.37093 * 120.00431 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00157 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00087 * 359.97438 * 10 9 7 12 12 C 1.50707 * 119.99655 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.46664 * 179.97438 * 12 10 9 14 14 C 1.34780 * 119.99871 * 180.02562 * 13 12 10 15 15 S 1.71193 * 119.99840 * 359.97438 * 14 13 12 16 16 N 1.34771 * 120.00004 * 180.02562 * 14 13 12 17 17 C 1.39888 * 120.00321 * 185.53658 * 16 14 13 18 18 C 1.38883 * 120.06776 * 41.87838 * 17 16 14 19 19 C 1.38115 * 119.92593 * 180.02562 * 18 17 16 20 20 C 1.38286 * 120.07006 * 359.97438 * 19 18 17 21 21 N 1.48023 * 119.92353 * 179.97438 * 20 19 18 22 22 O 1.21796 * 120.00317 * 0.02562 * 21 20 19 23 23 O 1.21807 * 119.99668 * 179.72835 * 21 20 19 24 24 C 1.38284 * 120.14564 * 0.26047 * 20 19 18 25 25 C 1.38107 * 120.06875 * 359.48644 * 24 20 19 26 26 H 0.96993 * 119.99834 * 0.02562 * 1 2 3 27 27 H 0.97008 * 119.99570 * 0.02562 * 9 7 2 28 28 H 1.09002 * 109.47051 * 60.00338 * 12 10 9 29 29 H 1.08992 * 109.46981 * 299.99549 * 12 10 9 30 30 H 0.96996 * 120.00244 * 0.02562 * 13 12 10 31 31 H 0.97007 * 120.00422 * 5.53511 * 16 14 13 32 32 H 1.07998 * 120.03756 * 0.02562 * 18 17 16 33 33 H 1.07994 * 119.96446 * 179.97438 * 19 18 17 34 34 H 1.08001 * 119.96084 * 179.74386 * 24 20 19 35 35 H 1.08001 * 120.03918 * 180.26037 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8894 2.3963 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3235 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2437 -4.8630 -0.0011 13 7 2.1957 -5.9765 -0.0016 14 6 1.7465 -7.2472 -0.0027 15 16 0.0634 -7.5600 -0.0029 16 7 2.6223 -8.2716 -0.0026 17 6 2.1604 -9.5867 -0.1207 18 6 1.1480 -9.8905 -1.0215 19 6 0.6939 -11.1899 -1.1353 20 6 1.2465 -12.1879 -0.3537 21 7 0.7570 -13.5793 -0.4779 22 8 -0.1312 -13.8442 -1.2680 23 8 1.2462 -14.4604 0.2063 24 6 2.2514 -11.8879 0.5477 25 6 2.7136 -10.5915 0.6625 26 1 -0.4849 0.8400 -0.0004 27 1 0.3534 -2.3906 -0.0005 28 1 0.6174 -4.9205 -0.8914 29 1 0.6168 -4.9209 0.8886 30 1 3.1494 -5.7993 -0.0012 31 1 3.5730 -8.0970 0.0792 32 1 0.7163 -9.1116 -1.6325 33 1 -0.0936 -11.4267 -1.8353 34 1 2.6780 -12.6690 1.1595 35 1 3.5013 -10.3585 1.3637 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795161993.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:42 Heat of formation + Delta-G solvation = 12.926210 kcal Electronic energy + Delta-G solvation = -23070.976860 eV Core-core repulsion = 19198.970560 eV Total energy + Delta-G solvation = -3872.006300 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.072 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.35133 -40.70259 -39.19096 -37.97959 -36.72870 -35.50249 -34.23023 -31.86960 -31.65607 -31.19429 -28.33233 -26.30300 -24.97580 -24.37449 -23.17473 -22.51621 -20.15767 -19.61208 -19.16597 -18.76867 -18.67726 -18.06200 -17.68687 -16.46522 -16.00116 -15.72025 -15.48058 -15.25031 -15.14615 -14.55037 -14.29876 -14.05122 -13.90695 -13.69781 -13.38154 -12.61511 -12.37341 -11.93472 -11.81122 -11.71700 -11.40284 -11.38524 -11.30943 -11.29821 -10.57064 -10.49066 -10.47795 -9.85241 -9.82425 -9.16775 -8.98152 -8.32385 -8.06848 -7.44438 -6.70717 -4.13968 -0.49433 0.63028 0.81177 1.20425 1.28212 1.60552 2.09989 2.94281 2.95618 3.09206 3.12996 3.18419 3.46927 3.93222 4.01642 4.15573 4.39707 4.47131 4.51416 4.77639 4.97121 5.04042 5.27494 5.38178 5.44588 5.52693 5.58161 5.61883 5.80011 5.95448 6.08937 6.20738 6.49499 6.94817 7.27794 7.46032 7.69996 8.19820 8.83333 9.14707 9.60482 10.45263 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.046306 B = 0.002009 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.529107 B =13931.487654 C =14358.394157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.029 3.971 3 Si 0.935 3.065 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.310 4.310 8 H 0.107 0.893 9 N -0.536 5.536 10 C 0.417 3.583 11 O -0.604 6.604 12 C 0.109 3.891 13 N -0.636 5.636 14 C 0.552 3.448 15 S -0.615 6.615 16 N -0.645 5.645 17 C 0.201 3.799 18 C -0.077 4.077 19 C -0.044 4.044 20 C -0.050 4.050 21 N 0.032 4.968 22 O -0.162 6.162 23 O -0.168 6.168 24 C -0.045 4.045 25 C -0.131 4.131 26 H 0.277 0.723 27 H 0.398 0.602 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.413 0.587 31 H 0.414 0.586 32 H 0.167 0.833 33 H 0.158 0.842 34 H 0.156 0.844 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.002 -18.077 -0.512 18.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.175 4.175 3 Si 0.761 3.239 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.439 4.439 8 H 0.125 0.875 9 N -0.170 5.170 10 C 0.203 3.797 11 O -0.492 6.492 12 C -0.018 4.018 13 N -0.262 5.262 14 C 0.192 3.808 15 S -0.486 6.486 16 N -0.274 5.274 17 C 0.105 3.895 18 C -0.100 4.100 19 C -0.065 4.065 20 C -0.134 4.134 21 N 0.550 4.450 22 O -0.377 6.377 23 O -0.382 6.382 24 C -0.065 4.065 25 C -0.153 4.153 26 H 0.087 0.913 27 H 0.233 0.767 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.254 0.746 31 H 0.253 0.747 32 H 0.185 0.815 33 H 0.175 0.825 34 H 0.174 0.826 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.652 -17.163 -0.435 17.788 hybrid contribution 1.344 0.934 0.173 1.646 sum 5.996 -16.229 -0.262 17.304 Atomic orbital electron populations 1.69614 1.06064 1.28863 1.48008 1.25387 0.95714 1.00150 0.96266 0.85723 0.79639 0.80509 0.78038 1.19082 1.20411 1.20415 1.19785 0.93532 0.81757 1.48844 0.87482 1.41760 1.09692 1.04348 1.61160 1.19542 0.88197 0.84849 0.87159 1.90513 1.13577 1.86639 1.58487 1.21515 0.90733 0.83584 1.05990 1.44838 1.12681 1.02794 1.65907 1.22314 0.95392 0.81935 0.81110 1.93589 0.91855 1.90302 1.72834 1.42171 1.09576 1.03240 1.72408 1.17706 0.95774 0.82120 0.93862 1.21479 0.95311 0.95894 0.97274 1.20862 0.98391 0.90310 0.96977 1.21153 1.03804 0.81831 1.06662 1.43612 0.99305 1.03195 0.98865 1.94547 1.22750 1.88138 1.32313 1.94528 1.59772 1.41005 1.42930 1.20715 0.93128 0.97377 0.95275 1.20878 1.03388 0.91162 0.99828 0.91300 0.76737 0.87309 0.87388 0.74578 0.74656 0.81543 0.82474 0.82602 0.83320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.30 13.05 55.50 0.72 -21.58 16 2 C 0.03 0.71 5.50 -17.46 -0.10 0.62 16 3 Si 0.93 19.34 29.55 -169.99 -5.02 14.32 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 7 C -0.31 -7.84 9.68 -14.93 -0.14 -7.98 16 8 H 0.11 2.84 7.16 -52.49 -0.38 2.46 16 9 N -0.54 -12.10 5.29 -10.96 -0.06 -12.16 16 10 C 0.42 8.40 7.85 -10.98 -0.09 8.32 16 11 O -0.60 -13.76 15.24 5.55 0.08 -13.68 16 12 C 0.11 1.65 5.61 -5.19 -0.03 1.62 16 13 N -0.64 -7.96 5.53 -63.21 -0.35 -8.31 16 14 C 0.55 6.44 7.74 -86.92 -0.67 5.77 16 15 S -0.62 -9.30 25.06 -107.50 -2.69 -12.00 16 16 N -0.65 -5.17 5.33 -11.40 -0.06 -5.23 16 17 C 0.20 1.67 5.91 -83.70 -0.49 1.17 16 18 C -0.08 -0.72 7.86 -39.39 -0.31 -1.03 16 19 C -0.04 -0.40 9.55 -39.61 -0.38 -0.78 16 20 C -0.05 -0.49 6.85 -79.91 -0.55 -1.04 16 21 N 0.03 0.38 4.45 33.98 0.15 0.53 16 22 O -0.16 -2.07 18.44 -29.46 -0.54 -2.61 16 23 O -0.17 -2.07 18.44 -29.46 -0.54 -2.61 16 24 C -0.04 -0.34 9.55 -39.61 -0.38 -0.71 16 25 C -0.13 -0.85 9.97 -39.39 -0.39 -1.24 16 26 H 0.28 6.57 8.31 -40.82 -0.34 6.23 16 27 H 0.40 8.66 7.90 -40.82 -0.32 8.34 16 28 H 0.11 1.59 7.99 -51.93 -0.41 1.18 16 29 H 0.11 1.61 7.99 -51.93 -0.42 1.19 16 30 H 0.41 4.92 7.46 -40.82 -0.30 4.62 16 31 H 0.41 2.04 8.84 -40.82 -0.36 1.68 16 32 H 0.17 1.74 6.27 -50.03 -0.31 1.42 16 33 H 0.16 1.29 7.60 -52.49 -0.40 0.89 16 34 H 0.16 0.92 7.60 -52.49 -0.40 0.52 16 35 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 LS Contribution 332.97 15.07 5.02 5.02 Total: -1.00 -30.96 332.97 -9.69 -40.65 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -2.86 Total: 12.96 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -3.53 Total: 4.71 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: 0.41 Total: -46.75 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -1.00 Total: -18.90 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.32 kcal Atomic # 16 Polarization: -9.30 SS G_CDS: -2.69 Total: -12.00 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.96 -9.69 -40.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795161993.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.573 kcal (2) G-P(sol) polarization free energy of solvation -30.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds