Wall clock time and date at job start Fri Apr 10 2020 18:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00021 * 2 1 4 4 H 1.48504 * 109.46940 * 270.00097 * 3 2 1 5 5 H 1.48493 * 109.47084 * 29.99681 * 3 2 1 6 6 H 1.48494 * 109.47121 * 150.00116 * 3 2 1 7 7 C 1.37878 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99999 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00217 * 180.02562 * 7 2 1 10 10 O 1.42895 * 109.47282 * 179.97438 * 9 7 2 11 11 C 1.42905 * 114.00316 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47498 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.47097 * 65.00264 * 12 11 10 14 14 C 1.34950 * 117.00339 * 180.02562 * 13 12 11 15 15 O 1.21669 * 119.99580 * 359.97438 * 14 13 12 16 16 C 1.41752 * 120.00206 * 179.97438 * 14 13 12 17 17 S 1.75811 * 125.47901 * 6.33070 * 16 14 13 18 18 C 1.70569 * 91.67155 * 180.02562 * 17 16 14 19 19 C 1.33626 * 111.17689 * 359.76561 * 18 17 16 20 20 C 1.37426 * 125.47958 * 186.35707 * 16 14 13 21 21 N 1.39958 * 123.48887 * 359.93766 * 20 16 14 22 22 C 1.35115 * 127.38868 * 173.71328 * 21 20 16 23 23 N 1.30735 * 107.26641 * 180.28043 * 22 21 20 24 24 N 1.28424 * 110.64375 * 359.59348 * 23 22 21 25 25 N 1.28940 * 110.21699 * 0.42042 * 24 23 22 26 26 H 0.96997 * 120.00255 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.47309 * 59.99303 * 9 7 2 28 28 H 1.09000 * 109.47366 * 299.99682 * 9 7 2 29 29 H 1.09005 * 109.46950 * 60.00245 * 11 10 9 30 30 H 1.09003 * 109.47155 * 300.00588 * 11 10 9 31 31 H 1.08997 * 109.47100 * 305.00592 * 12 11 10 32 32 H 1.08996 * 109.47240 * 185.00106 * 12 11 10 33 33 H 1.08005 * 124.41407 * 180.02562 * 18 17 16 34 34 H 1.08002 * 122.45525 * 180.21733 * 19 18 17 35 35 H 1.07999 * 126.37108 * 0.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 3.9878 -2.5413 -0.0001 11 6 5.4124 -2.6542 -0.0001 12 6 5.8069 -4.1325 -0.0009 13 8 5.3797 -4.7389 -1.2223 14 6 5.6520 -6.0508 -1.3831 15 8 6.2370 -6.6622 -0.5089 16 6 5.2563 -6.7165 -2.5704 17 16 4.5489 -5.9473 -3.9842 18 6 4.4328 -7.4405 -4.8003 19 6 4.9037 -8.4396 -4.0482 20 6 5.3636 -8.0670 -2.8012 21 7 5.8900 -8.9701 -1.8706 22 6 5.9255 -10.3175 -1.9644 23 7 6.4961 -10.7673 -0.8775 24 7 6.8313 -9.7961 -0.1070 25 7 6.4943 -8.6700 -0.6371 26 1 -0.4850 0.8400 -0.0004 27 1 3.8746 -0.6807 0.8905 28 1 3.8752 -0.6797 -0.8895 29 1 5.8152 -2.1708 0.8900 30 1 5.8152 -2.1706 -0.8900 31 1 5.3310 -4.6360 0.8406 32 1 6.8897 -4.2196 0.0886 33 1 4.0347 -7.5621 -5.7970 34 1 4.9201 -9.4641 -4.3897 35 1 5.5485 -10.9127 -2.7829 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815190711.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:46 Heat of formation + Delta-G solvation = 36.647548 kcal Electronic energy + Delta-G solvation = -24030.193728 eV Core-core repulsion = 20159.216062 eV Total energy + Delta-G solvation = -3870.977666 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.072 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.24526 -41.72723 -39.79475 -38.75147 -37.42356 -35.13477 -34.89679 -33.34332 -32.31473 -31.11822 -29.55239 -27.55621 -24.89441 -24.74817 -24.01973 -23.50313 -22.68718 -21.16557 -20.17197 -19.14973 -18.70734 -18.12346 -17.71875 -17.44386 -17.07211 -16.98741 -16.67408 -16.44619 -16.13569 -15.44473 -15.11757 -15.02317 -14.63219 -14.32843 -14.15761 -13.86243 -13.61887 -13.43119 -13.30326 -13.01727 -12.66193 -12.63563 -12.48029 -12.27096 -11.98727 -11.86888 -11.74234 -11.53121 -11.36059 -11.06240 -10.93326 -10.42818 -10.17603 -9.59089 -8.37464 -6.46027 -1.21392 -0.01822 0.02104 0.67254 0.96960 1.02026 1.27845 1.34432 1.37853 1.48577 1.60806 1.79984 2.29784 2.92218 2.95324 3.03025 3.30508 3.63657 3.73459 3.91174 4.06545 4.07829 4.13046 4.26892 4.35062 4.47392 4.54872 4.58066 4.66668 4.80311 4.87196 4.98985 5.28733 5.41878 5.45076 5.90216 6.57295 6.62090 6.70051 7.18220 7.34380 8.79765 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.018955 B = 0.002863 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.851955 B = 9778.484375 C =10580.226639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.013 3.987 3 Si 0.957 3.043 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.243 1.243 7 C -0.548 4.548 8 H 0.027 0.973 9 C 0.178 3.822 10 O -0.407 6.407 11 C 0.053 3.947 12 C 0.078 3.922 13 O -0.353 6.353 14 C 0.508 3.492 15 O -0.482 6.482 16 C -0.317 4.317 17 S 0.343 5.657 18 C -0.180 4.180 19 C -0.155 4.155 20 C 0.196 3.804 21 N -0.334 5.334 22 C 0.245 3.755 23 N -0.360 5.360 24 N -0.092 5.092 25 N -0.030 5.030 26 H 0.273 0.727 27 H 0.016 0.984 28 H 0.018 0.982 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.234 0.766 34 H 0.209 0.791 35 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.348 -16.957 -16.854 27.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.185 4.185 3 Si 0.778 3.222 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.167 1.167 7 C -0.586 4.586 8 H 0.045 0.955 9 C 0.103 3.897 10 O -0.327 6.327 11 C -0.023 4.023 12 C 0.004 3.996 13 O -0.270 6.270 14 C 0.353 3.647 15 O -0.369 6.369 16 C -0.439 4.439 17 S 0.612 5.388 18 C -0.319 4.319 19 C -0.185 4.185 20 C 0.084 3.916 21 N -0.125 5.125 22 C -0.051 4.051 23 N -0.207 5.207 24 N -0.089 5.089 25 N -0.017 5.017 26 H 0.082 0.918 27 H 0.034 0.966 28 H 0.035 0.965 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.123 0.877 33 H 0.250 0.750 34 H 0.226 0.774 35 H 0.318 0.682 Dipole moment (debyes) X Y Z Total from point charges 13.504 -15.540 -15.636 25.852 hybrid contribution -0.033 -0.466 0.299 0.555 sum 13.471 -16.006 -15.337 25.940 Atomic orbital electron populations 1.70034 1.08337 1.28848 1.50965 1.25865 0.95817 1.03481 0.93348 0.85586 0.79449 0.77219 0.79961 1.18046 1.20050 1.16684 1.21155 0.91023 0.93790 1.52596 0.95453 1.20372 0.93288 0.80534 0.95514 1.87925 1.20586 1.28810 1.95387 1.22735 0.82868 0.93985 1.02715 1.22792 1.00549 0.92175 0.84091 1.86215 1.74681 1.24197 1.41891 1.18895 0.77775 0.81020 0.87015 1.91152 1.38073 1.64720 1.42982 1.22596 1.21102 0.97119 1.03078 1.84060 1.49502 1.06177 0.99103 1.26019 1.02336 0.96357 1.07227 1.19871 1.04446 1.05070 0.89113 1.17355 0.98509 0.85868 0.89918 1.49039 1.41129 1.07148 1.15151 1.28731 0.95013 0.81394 0.99975 1.74340 1.18275 1.24970 1.03082 1.78194 1.14170 0.94146 1.22355 1.83970 1.11389 1.15269 0.91077 0.91758 0.96613 0.96456 0.89260 0.91182 0.92205 0.87726 0.74952 0.77377 0.68182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.98 13.96 21.45 0.30 -58.68 16 2 C 0.01 0.75 5.47 84.65 0.46 1.22 16 3 Si 0.96 42.46 27.47 68.60 1.88 44.34 16 4 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.24 -9.86 6.54 99.48 0.65 -9.21 16 7 C -0.55 -33.32 9.99 25.60 0.26 -33.07 16 8 H 0.03 1.89 8.06 -2.91 -0.02 1.86 16 9 C 0.18 8.82 4.76 71.23 0.34 9.16 16 10 O -0.41 -19.08 10.29 -144.35 -1.49 -20.56 16 11 C 0.05 1.78 6.32 71.98 0.45 2.24 16 12 C 0.08 2.48 5.76 71.98 0.41 2.89 16 13 O -0.35 -11.93 9.84 -55.69 -0.55 -12.48 16 14 C 0.51 16.42 7.72 68.69 0.53 16.96 16 15 O -0.48 -17.84 12.00 19.28 0.23 -17.61 16 16 C -0.32 -7.62 6.29 22.95 0.14 -7.48 16 17 S 0.34 5.24 22.83 -56.49 -1.29 3.95 16 18 C -0.18 -0.92 10.90 66.77 0.73 -0.19 16 19 C -0.15 -1.01 9.63 21.18 0.20 -0.81 16 20 C 0.20 3.60 6.74 37.60 0.25 3.85 16 21 N -0.33 -7.54 3.84 -192.90 -0.74 -8.29 16 22 C 0.25 3.70 12.32 180.17 2.22 5.92 16 23 N -0.36 -9.00 12.15 -60.10 -0.73 -9.73 16 24 N -0.09 -3.03 13.39 37.02 0.50 -2.53 16 25 N -0.03 -0.99 9.24 37.02 0.34 -0.64 16 26 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 27 H 0.02 0.75 7.20 -2.38 -0.02 0.74 16 28 H 0.02 0.81 7.57 -2.39 -0.02 0.79 16 29 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 30 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.06 2.08 8.13 -2.39 -0.02 2.06 16 32 H 0.10 2.74 8.13 -2.39 -0.02 2.72 16 33 H 0.23 -0.91 8.06 -2.91 -0.02 -0.93 16 34 H 0.21 -0.76 7.50 -2.91 -0.02 -0.78 16 35 H 0.30 -0.35 7.61 -2.91 -0.02 -0.37 16 Total: -1.00 -91.83 328.50 5.55 -86.28 By element: Atomic # 1 Polarization: -5.84 SS G_CDS: 1.09 Total: -4.75 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 6.01 Total: 0.70 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -0.34 Total: -79.87 kcal Atomic # 8 Polarization: -48.85 SS G_CDS: -1.80 Total: -50.65 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.88 Total: 44.34 kcal Atomic # 16 Polarization: 5.24 SS G_CDS: -1.29 Total: 3.95 kcal Total: -91.83 5.55 -86.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815190711.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.926 kcal (2) G-P(sol) polarization free energy of solvation -91.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds