Wall clock time and date at job start Fri Apr 10 2020 18:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47069 * 9.75092 * 3 2 1 5 5 S 1.81405 * 109.47039 * 180.02562 * 4 3 2 6 6 O 1.42097 * 110.54273 * 68.37020 * 5 4 3 7 7 O 1.42102 * 110.53825 * 291.62442 * 5 4 3 8 8 N 1.65591 * 104.44833 * 180.02562 * 5 4 3 9 9 C 1.34776 * 120.00778 * 64.99574 * 8 5 4 10 10 O 1.21596 * 119.99483 * 0.02562 * 9 8 5 11 11 C 1.47529 * 120.00576 * 179.97438 * 9 8 5 12 12 C 1.39668 * 120.19410 * 0.02562 * 11 9 8 13 13 C 1.37835 * 119.91853 * 179.97438 * 12 11 9 14 14 C 1.38573 * 120.31903 * 0.02562 * 13 12 11 15 15 C 1.38022 * 120.40696 * 0.02562 * 14 13 12 16 16 C 1.38831 * 120.06839 * 359.95623 * 15 14 13 17 17 O 1.35527 * 120.16025 * 180.02562 * 16 15 14 18 18 C 1.34817 * 116.99627 * 354.39561 * 17 16 15 19 19 H 1.07998 * 120.00286 * 5.06815 * 18 17 16 20 20 C 1.38705 * 119.99676 * 185.06799 * 18 17 16 21 21 N 1.31514 * 119.99991 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99619 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47405 * 90.00078 * 22 20 18 24 24 H 1.48502 * 109.46753 * 209.99819 * 22 20 18 25 25 H 1.48501 * 109.47298 * 329.99571 * 22 20 18 26 26 H 1.09000 * 109.47289 * 249.75256 * 3 2 1 27 27 H 1.08994 * 109.47135 * 129.75027 * 3 2 1 28 28 H 1.08990 * 109.47120 * 59.99887 * 4 3 2 29 29 H 1.09000 * 109.46999 * 299.99512 * 4 3 2 30 30 H 0.97003 * 119.99793 * 244.99933 * 8 5 4 31 31 H 1.07997 * 120.04248 * 0.26955 * 12 11 9 32 32 H 1.07992 * 119.83718 * 179.97438 * 13 12 11 33 33 H 1.08000 * 119.79251 * 179.97438 * 14 13 12 34 34 H 1.07996 * 119.96390 * 179.97438 * 15 14 13 35 35 H 0.96997 * 120.00153 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.4208 -0.2443 5 16 4.9327 -1.4201 -0.2436 6 8 5.4307 -1.1462 1.0588 7 8 5.4315 -0.7269 -1.3794 8 7 5.3466 -3.0002 -0.5159 9 6 5.0378 -3.5851 -1.6902 10 8 4.4556 -2.9522 -2.5500 11 6 5.4070 -4.9926 -1.9330 12 6 6.0763 -5.7231 -0.9486 13 6 6.4181 -7.0380 -1.1813 14 6 6.1014 -7.6399 -2.3886 15 6 5.4412 -6.9302 -3.3711 16 6 5.0887 -5.6050 -3.1541 17 8 4.4399 -4.9065 -4.1174 18 6 4.2684 -5.5182 -5.3065 19 1 4.5678 -6.5483 -5.4321 20 6 3.7075 -4.8246 -6.3687 21 7 3.3424 -3.5705 -6.2156 22 14 3.4692 -5.6724 -8.0160 23 1 2.1313 -6.3158 -8.0527 24 1 3.5665 -4.6699 -9.1072 25 1 4.5204 -6.7055 -8.1977 26 1 2.9712 0.3565 0.9641 27 1 2.9711 0.6579 -0.7901 28 1 2.7555 -1.7766 -1.2084 29 1 2.7557 -2.0781 0.5458 30 1 5.8113 -3.5049 0.1698 31 1 6.3214 -5.2598 -0.0044 32 1 6.9359 -7.6014 -0.4193 33 1 6.3737 -8.6706 -2.5620 34 1 5.1983 -7.4063 -4.3095 35 1 2.9505 -3.0853 -6.9584 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821582721.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:52 Heat of formation + Delta-G solvation = -102.268617 kcal Electronic energy + Delta-G solvation = -24742.356958 eV Core-core repulsion = 20833.062684 eV Total energy + Delta-G solvation = -3909.294274 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.066 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.49272 -40.02465 -38.31226 -38.08343 -38.02049 -37.21713 -35.46339 -34.38697 -34.32024 -31.99496 -30.58359 -27.41164 -26.44517 -25.25826 -23.34083 -22.19583 -20.73922 -19.84961 -19.75602 -19.25910 -18.18264 -18.10108 -17.57042 -16.98219 -16.45997 -16.25043 -16.17882 -16.03606 -15.83414 -15.34766 -15.21900 -15.00345 -14.68789 -14.30936 -14.09463 -14.04261 -13.66550 -13.53496 -13.34146 -13.18761 -13.10997 -13.02085 -12.72013 -12.54218 -12.36309 -12.34136 -12.16940 -12.12815 -11.64136 -11.52980 -10.91622 -10.82668 -9.87934 -9.06048 -8.45371 -6.15273 -1.04947 -0.01077 0.73610 1.27210 1.34725 1.44922 1.52608 1.56279 1.67096 1.73430 2.15601 2.53056 2.85683 2.92084 3.09017 3.19996 3.36768 3.43121 3.57646 3.78741 4.04160 4.09397 4.26638 4.30222 4.49034 4.52585 4.62891 4.72542 4.94804 5.07551 5.13175 5.44350 5.57530 5.71340 5.82998 5.98835 6.16891 6.43164 6.76826 6.95353 7.75837 8.74072 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.010837 B = 0.004601 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.067059 B = 6084.338179 C = 7864.241350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C 0.242 3.758 3 C -0.018 4.018 4 C -0.622 4.622 5 S 2.625 3.375 6 O -0.942 6.942 7 O -0.969 6.969 8 N -1.039 6.039 9 C 0.573 3.427 10 O -0.514 6.514 11 C -0.253 4.253 12 C -0.025 4.025 13 C -0.201 4.201 14 C -0.034 4.034 15 C -0.258 4.258 16 C 0.156 3.844 17 O -0.184 6.184 18 C -0.425 4.425 19 H 0.109 0.891 20 C -0.018 4.018 21 N -0.900 5.900 22 Si 1.017 2.983 23 H -0.263 1.263 24 H -0.275 1.275 25 H -0.248 1.248 26 H 0.172 0.828 27 H 0.142 0.858 28 H 0.132 0.868 29 H 0.177 0.823 30 H 0.445 0.555 31 H 0.169 0.831 32 H 0.166 0.834 33 H 0.153 0.847 34 H 0.124 0.876 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.119 -2.934 15.746 17.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.162 5.162 2 C -0.076 4.076 3 C -0.059 4.059 4 C -0.754 4.754 5 S 2.720 3.280 6 O -0.933 6.933 7 O -0.959 6.959 8 N -0.807 5.807 9 C 0.365 3.635 10 O -0.388 6.388 11 C -0.260 4.260 12 C -0.043 4.043 13 C -0.219 4.219 14 C -0.052 4.052 15 C -0.277 4.277 16 C 0.100 3.900 17 O -0.086 6.086 18 C -0.501 4.501 19 H 0.126 0.874 20 C -0.218 4.218 21 N -0.535 5.535 22 Si 0.836 3.164 23 H -0.188 1.188 24 H -0.200 1.200 25 H -0.171 1.171 26 H 0.189 0.811 27 H 0.159 0.841 28 H 0.151 0.849 29 H 0.195 0.805 30 H 0.286 0.714 31 H 0.187 0.813 32 H 0.183 0.817 33 H 0.171 0.829 34 H 0.142 0.858 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.419 -1.357 15.087 15.779 hybrid contribution -0.400 -0.752 -1.045 1.348 sum 4.019 -2.109 14.042 14.758 Atomic orbital electron populations 1.81278 1.14553 1.09603 1.10776 1.29060 0.95025 0.91957 0.91559 1.19272 0.81882 0.94639 1.10098 1.30495 1.24675 1.06022 1.14194 1.04711 0.77793 0.72213 0.73292 1.93641 1.78183 1.82218 1.39223 1.93649 1.77738 1.71544 1.53014 1.54656 1.67441 1.34678 1.23906 1.18327 0.77080 0.88022 0.80096 1.91107 1.39739 1.64683 1.43244 1.19075 1.16192 0.93960 0.96759 1.21415 0.91744 0.94346 0.96833 1.21211 1.06682 0.95286 0.98735 1.21489 0.91662 1.00037 0.91983 1.21317 1.09319 0.94073 1.03008 1.20046 0.89085 0.91702 0.89190 1.84130 1.62963 1.41278 1.20274 1.22001 1.43512 0.98289 0.86254 0.87398 1.26660 0.95585 0.96239 1.03336 1.70274 1.38787 1.10733 1.33688 0.84614 0.79682 0.77781 0.74286 1.18821 1.20040 1.17116 0.81078 0.84052 0.84936 0.80533 0.71430 0.81340 0.81698 0.82944 0.85830 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -14.36 18.54 20.01 0.37 -13.99 16 2 C 0.24 5.41 15.43 89.44 1.38 6.79 16 3 C -0.02 -0.26 5.71 28.79 0.16 -0.10 16 4 C -0.62 -11.69 5.84 71.98 0.42 -11.27 16 5 S 2.62 61.50 5.11 -56.49 -0.29 61.21 16 6 O -0.94 -20.38 18.08 -127.65 -2.31 -22.69 16 7 O -0.97 -33.90 17.03 -120.71 -2.06 -35.96 16 8 N -1.04 -25.60 5.55 -175.81 -0.98 -26.58 16 9 C 0.57 21.66 7.50 86.69 0.65 22.31 16 10 O -0.51 -25.45 13.27 24.06 0.32 -25.14 16 11 C -0.25 -9.48 5.89 -19.99 -0.12 -9.60 16 12 C -0.03 -0.62 9.54 22.52 0.21 -0.41 16 13 C -0.20 -4.47 10.03 22.25 0.22 -4.25 16 14 C -0.03 -0.91 10.03 22.30 0.22 -0.69 16 15 C -0.26 -9.93 9.16 22.36 0.20 -9.73 16 16 C 0.16 7.22 6.66 22.91 0.15 7.38 16 17 O -0.18 -10.79 7.84 0.74 0.01 -10.78 16 18 C -0.42 -24.12 9.49 67.93 0.64 -23.48 16 19 H 0.11 5.47 5.21 -2.91 -0.02 5.46 16 20 C -0.02 -1.02 5.49 84.85 0.47 -0.55 16 21 N -0.90 -56.14 13.67 21.62 0.30 -55.85 16 22 Si 1.02 42.43 29.55 68.60 2.03 44.46 16 23 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 24 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 25 H -0.25 -9.40 7.11 99.48 0.71 -8.70 16 26 H 0.17 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.14 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.13 3.45 7.19 -2.40 -0.02 3.43 16 29 H 0.18 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.44 6.71 6.82 -96.75 -0.66 6.05 16 31 H 0.17 2.31 6.40 -2.91 -0.02 2.29 16 32 H 0.17 2.19 8.06 -2.91 -0.02 2.16 16 33 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 34 H 0.12 4.89 5.64 -2.91 -0.02 4.87 16 35 H 0.27 15.62 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -93.77 330.83 2.53 -91.24 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.52 Total: 17.67 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: 4.63 Total: -23.60 kcal Atomic # 7 Polarization: -96.10 SS G_CDS: -0.31 Total: -96.41 kcal Atomic # 8 Polarization: -90.52 SS G_CDS: -4.04 Total: -94.56 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Atomic # 16 Polarization: 61.50 SS G_CDS: -0.29 Total: 61.21 kcal Total: -93.77 2.53 -91.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821582721.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.033 kcal (2) G-P(sol) polarization free energy of solvation -93.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds