Wall clock time and date at job start Fri Apr 10 2020 18:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 179.97438 * 10 9 7 12 12 S 1.65599 * 120.00012 * 165.00017 * 11 10 9 13 13 O 1.42097 * 106.40866 * 178.54114 * 12 11 10 14 14 O 1.42102 * 106.40573 * 311.46330 * 12 11 10 15 15 C 1.76207 * 107.21714 * 65.00092 * 12 11 10 16 16 C 1.38772 * 120.31767 * 269.72210 * 15 12 11 17 17 C 1.38422 * 118.50049 * 179.77936 * 16 15 12 18 18 C 1.39285 * 119.07163 * 0.49500 * 17 16 15 19 19 C 1.48440 * 119.72343 * 179.72432 * 18 17 16 20 20 N 1.34056 * 126.67241 * 0.04841 * 19 18 17 21 21 N 1.28991 * 107.26442 * 179.97438 * 20 19 18 22 22 N 1.28733 * 108.94439 * 359.97438 * 21 20 19 23 23 H 0.97000 * 125.33460 * 180.02562 * 22 21 20 24 24 N 1.28864 * 109.32271 * 359.76486 * 22 21 20 25 25 N 1.32618 * 120.55459 * 359.74679 * 18 17 16 26 26 C 1.31759 * 121.62156 * 359.97438 * 25 18 17 27 27 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 29 29 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 30 30 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 31 31 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 32 32 H 0.97001 * 120.00191 * 345.00817 * 11 10 9 33 33 H 1.07995 * 120.75032 * 0.02562 * 16 15 12 34 34 H 1.08004 * 120.46305 * 180.23688 * 17 16 15 35 35 H 1.08003 * 119.55881 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 16 2.2984 -6.3406 -0.3699 13 8 1.3367 -7.3797 -0.2494 14 8 3.0278 -6.0914 -1.5637 15 6 3.4937 -6.6199 0.8943 16 6 4.7811 -6.1184 0.7643 17 6 5.6885 -6.3562 1.7822 18 6 5.2834 -7.0955 2.8909 19 6 6.2465 -7.3643 3.9881 20 7 7.5240 -6.9626 4.0484 21 7 8.0109 -7.4004 5.1597 22 7 7.0963 -8.0524 5.7887 23 1 7.2064 -8.4826 6.6511 24 7 6.0100 -8.0391 5.0956 25 7 4.0447 -7.5616 2.9745 26 6 3.1595 -7.3452 2.0228 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6241 -2.5568 0.8902 30 1 2.8720 -3.6043 -0.8894 31 1 2.8720 -3.6043 0.8905 32 1 0.5677 -4.9450 0.2188 33 1 5.0674 -5.5519 -0.1095 34 1 6.6977 -5.9773 1.7156 35 1 2.1598 -7.7408 2.1251 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826381806.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:56 Heat of formation + Delta-G solvation = 56.351282 kcal Electronic energy + Delta-G solvation = -23889.687361 eV Core-core repulsion = 20051.856864 eV Total energy + Delta-G solvation = -3837.830497 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.079 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.66261 -41.40230 -38.39821 -37.02436 -36.96953 -35.69789 -34.95027 -34.69522 -33.79800 -32.27940 -30.97336 -26.77774 -26.39115 -26.04184 -24.62913 -23.48955 -22.93792 -20.74533 -20.45012 -19.24853 -18.66538 -18.34116 -18.22985 -18.00031 -17.78593 -16.79617 -16.42178 -15.74091 -15.54884 -15.53037 -15.33826 -15.15398 -14.50632 -14.41300 -14.31372 -13.50002 -13.37834 -13.27969 -13.23525 -13.15565 -12.96174 -12.63154 -12.50346 -12.42757 -12.37844 -12.32057 -12.23775 -11.46111 -11.33431 -11.25744 -10.94361 -10.59301 -10.45342 -10.28406 -8.17517 -6.27418 -1.11955 -0.64610 -0.04029 -0.02186 0.83999 1.21480 1.46317 1.46773 1.57137 1.95106 2.12984 2.37522 2.45986 2.70301 2.77216 3.15101 3.18157 3.47809 3.69379 3.73464 3.85497 3.96893 4.23636 4.25016 4.50328 4.59703 4.60097 4.68907 4.88829 5.02141 5.21136 5.47466 5.54964 5.69231 5.85629 6.05943 6.26332 6.37904 6.89310 6.92774 7.41964 8.94431 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.011648 B = 0.003289 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.340368 B = 8510.583492 C =10245.649572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.961 3.039 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.070 0.930 9 C 0.018 3.982 10 C 0.129 3.871 11 N -1.108 6.108 12 S 2.724 3.276 13 O -0.974 6.974 14 O -0.975 6.975 15 C -0.720 4.720 16 C 0.029 3.971 17 C -0.142 4.142 18 C 0.237 3.763 19 C 0.196 3.804 20 N -0.268 5.268 21 N -0.046 5.046 22 N -0.195 5.195 23 H 0.498 0.502 24 N -0.263 5.263 25 N -0.484 5.484 26 C 0.202 3.798 27 H 0.263 0.737 28 H 0.002 0.998 29 H 0.007 0.993 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.424 0.576 33 H 0.182 0.818 34 H 0.180 0.820 35 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.321 -16.937 9.630 23.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.786 3.214 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.089 0.911 9 C -0.021 4.021 10 C 0.004 3.996 11 N -0.870 5.870 12 S 2.812 3.188 13 O -0.965 6.965 14 O -0.965 6.965 15 C -0.809 4.809 16 C 0.003 3.997 17 C -0.164 4.164 18 C 0.098 3.902 19 C -0.085 4.085 20 N -0.142 5.142 21 N -0.041 5.041 22 N -0.046 5.046 23 H 0.358 0.642 24 N -0.116 5.116 25 N -0.195 5.195 26 C 0.042 3.958 27 H 0.072 0.928 28 H 0.021 0.979 29 H 0.026 0.974 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.260 0.740 33 H 0.200 0.800 34 H 0.198 0.802 35 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 13.605 -17.817 9.952 24.527 hybrid contribution -0.224 1.257 0.411 1.341 sum 13.381 -16.560 10.364 23.679 Atomic orbital electron populations 1.70079 1.07738 1.27756 1.51569 1.25899 0.95681 1.03201 0.94822 0.85497 0.78811 0.78677 0.78371 1.20031 1.21289 1.18414 1.21600 0.94031 0.91706 1.50612 0.91133 1.19165 0.94566 0.92063 0.96262 1.21376 0.94977 0.81761 1.01497 1.55355 1.22002 1.21423 1.88209 1.00964 0.72702 0.71817 0.73349 1.93561 1.60348 1.55411 1.87160 1.93566 1.74137 1.85266 1.43508 1.32102 1.14950 1.14162 1.19712 1.21753 0.89653 0.90262 0.98068 1.22333 1.03223 0.98454 0.92437 1.18276 0.89016 0.93184 0.89705 1.23131 0.91766 0.99575 0.94007 1.76095 1.06877 1.19783 1.11409 1.78906 1.17154 1.07155 1.00862 1.47919 1.03016 1.33691 1.20020 0.64217 1.75113 1.11142 1.20046 1.05291 1.67619 1.01590 1.20821 1.29458 1.22849 0.99203 0.88520 0.85259 0.92838 0.97925 0.97420 0.90627 0.91209 0.73991 0.80032 0.80239 0.78577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.08 13.29 21.45 0.28 -53.79 16 2 C 0.00 0.12 5.46 84.66 0.46 0.58 16 3 Si 0.96 42.13 29.54 68.60 2.03 44.15 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.54 -28.26 9.11 25.60 0.23 -28.02 16 8 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.02 0.86 5.12 29.85 0.15 1.01 16 10 C 0.13 4.54 6.16 86.38 0.53 5.07 16 11 N -1.11 -32.30 6.00 -187.49 -1.12 -33.42 16 12 S 2.72 72.73 5.75 -56.49 -0.32 72.40 16 13 O -0.97 -28.71 17.30 -128.00 -2.21 -30.93 16 14 O -0.97 -30.79 16.82 -128.00 -2.15 -32.95 16 15 C -0.72 -16.73 5.97 22.40 0.13 -16.60 16 16 C 0.03 0.61 9.64 22.44 0.22 0.82 16 17 C -0.14 -2.84 9.74 22.57 0.22 -2.62 16 18 C 0.24 5.55 6.75 42.00 0.28 5.84 16 19 C 0.20 4.36 8.03 137.37 1.10 5.46 16 20 N -0.27 -5.67 12.21 -52.19 -0.64 -6.31 16 21 N -0.05 -0.78 13.47 37.02 0.50 -0.28 16 22 N -0.19 -2.33 7.90 37.02 0.29 -2.04 16 23 H 0.50 0.73 8.96 -347.54 -3.12 -2.39 16 24 N -0.26 -5.07 12.38 -52.13 -0.65 -5.72 16 25 N -0.48 -12.13 10.29 -184.82 -1.90 -14.03 16 26 C 0.20 4.67 10.68 84.71 0.90 5.57 16 27 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 28 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.08 2.60 7.75 -2.39 -0.02 2.58 16 31 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.42 11.58 8.65 -96.75 -0.84 10.74 16 33 H 0.18 3.09 7.70 -2.91 -0.02 3.06 16 34 H 0.18 2.76 7.88 -2.91 -0.02 2.74 16 35 H 0.20 3.72 7.62 -2.91 -0.02 3.69 16 Total: -1.00 -74.10 331.95 -4.43 -78.53 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -2.77 Total: 7.27 kcal Atomic # 6 Polarization: -27.13 SS G_CDS: 4.24 Total: -22.89 kcal Atomic # 7 Polarization: -112.36 SS G_CDS: -3.23 Total: -115.59 kcal Atomic # 8 Polarization: -59.51 SS G_CDS: -4.37 Total: -63.88 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Atomic # 16 Polarization: 72.73 SS G_CDS: -0.32 Total: 72.40 kcal Total: -74.10 -4.43 -78.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826381806.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.878 kcal (2) G-P(sol) polarization free energy of solvation -74.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds