Wall clock time and date at job start Fri Apr 10 2020 18:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47253 * 187.91622 * 3 2 1 5 5 H 1.08995 * 109.47375 * 305.00237 * 4 3 2 6 6 C 1.52996 * 109.47425 * 184.99582 * 4 3 2 7 7 C 1.52994 * 109.47324 * 175.00062 * 6 4 3 8 8 O 1.42899 * 109.47346 * 180.02562 * 7 6 4 9 9 C 1.42905 * 114.00116 * 180.02562 * 8 7 6 10 10 N 1.46501 * 109.46961 * 64.99918 * 4 3 2 11 11 C 1.34774 * 120.00162 * 275.00208 * 10 4 3 12 12 O 1.21598 * 120.00013 * 359.97438 * 11 10 4 13 13 N 1.34778 * 120.00697 * 180.02562 * 11 10 4 14 14 C 1.46495 * 120.00474 * 179.97438 * 13 11 10 15 15 C 1.53040 * 109.46101 * 275.02584 * 14 13 11 16 16 C 1.53193 * 109.31494 * 178.59848 * 15 14 13 17 17 N 1.46929 * 108.75892 * 54.65850 * 16 15 14 18 18 C 1.36938 * 120.62858 * 126.36547 * 17 16 15 19 19 H 1.08001 * 119.99912 * 331.85638 * 18 17 16 20 20 C 1.38815 * 120.00337 * 151.85760 * 18 17 16 21 21 N 1.31621 * 119.99483 * 343.06849 * 20 18 17 22 22 Si 1.86796 * 120.00135 * 163.06512 * 20 18 17 23 23 H 1.48499 * 109.47194 * 90.00358 * 22 20 18 24 24 H 1.48509 * 109.46942 * 210.00098 * 22 20 18 25 25 H 1.48497 * 109.47214 * 329.99617 * 22 20 18 26 26 C 1.46917 * 118.73996 * 306.37973 * 17 16 15 27 27 C 1.53036 * 109.46054 * 154.97202 * 14 13 11 28 28 H 4.44652 * 5.63409 * 179.97438 * 4 1 2 29 29 H 1.08992 * 109.47512 * 67.91626 * 3 2 1 30 30 H 1.09003 * 109.47071 * 307.91812 * 3 2 1 31 31 H 1.09000 * 109.46742 * 55.00223 * 6 4 3 32 32 H 1.08998 * 109.47367 * 295.00504 * 6 4 3 33 33 H 1.08994 * 109.47315 * 60.00006 * 7 6 4 34 34 H 1.09008 * 109.47204 * 300.00336 * 7 6 4 35 35 H 1.09001 * 109.47031 * 60.00012 * 9 8 7 36 36 H 1.08997 * 109.46862 * 179.97438 * 9 8 7 37 37 H 1.09004 * 109.47155 * 299.99791 * 9 8 7 38 38 H 0.96997 * 120.00438 * 95.00463 * 10 4 3 39 39 H 0.97000 * 119.99336 * 0.02562 * 13 11 10 40 40 H 1.08994 * 109.46256 * 35.00034 * 14 13 11 41 41 H 1.09005 * 109.49973 * 298.57103 * 15 14 13 42 42 H 1.09000 * 109.49852 * 58.66033 * 15 14 13 43 43 H 1.08996 * 109.59644 * 294.86966 * 16 15 14 44 44 H 1.08998 * 109.70048 * 174.50775 * 16 15 14 45 45 H 0.96999 * 119.99646 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.59261 * 293.82725 * 26 17 16 47 47 H 1.09007 * 109.70687 * 173.47036 * 26 17 16 48 48 H 1.09000 * 109.49943 * 301.34149 * 27 14 13 49 49 H 1.09002 * 109.49847 * 61.40183 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.4296 0.1987 5 1 2.7205 2.0793 -0.5608 6 6 4.6802 1.4495 0.0745 7 6 5.1792 2.8938 0.1487 8 8 6.6033 2.9124 0.0322 9 6 7.1742 4.2212 0.0902 10 7 2.7676 1.9058 1.5288 11 6 1.5500 2.4508 1.7209 12 8 0.7736 2.5479 0.7902 13 7 1.1933 2.8894 2.9444 14 6 -0.1299 3.4824 3.1531 15 6 -0.0847 4.9693 2.7936 16 6 -1.4782 5.5781 2.9795 17 7 -1.9356 5.3020 4.3483 18 6 -2.3562 6.3200 5.1619 19 1 -1.9615 7.3164 5.0282 20 6 -3.2900 6.0714 6.1584 21 7 -4.0148 4.9733 6.1219 22 14 -3.5179 7.2951 7.5512 23 1 -4.5546 8.2887 7.1726 24 1 -3.9466 6.5753 8.7774 25 1 -2.2337 7.9940 7.8111 26 6 -1.9328 3.9132 4.8275 27 6 -0.5344 3.3230 4.6204 28 1 -1.0502 -0.0003 -0.0002 29 1 3.0095 -0.3855 -0.9522 30 1 3.0096 -0.6307 0.8107 31 1 4.9726 1.0126 -0.8804 32 1 5.1185 0.8713 0.8879 33 1 4.8867 3.3307 1.1035 34 1 4.7408 3.4720 -0.6648 35 1 6.9235 4.6850 1.0442 36 1 8.2576 4.1494 -0.0050 37 1 6.7770 4.8273 -0.7241 38 1 3.3870 1.8288 2.2712 39 1 1.8132 2.8130 3.6866 40 1 -0.8583 2.9774 2.5188 41 1 0.6253 5.4796 3.4444 42 1 0.2262 5.0832 1.7551 43 1 -2.1704 5.1315 2.2658 44 1 -1.4328 6.6553 2.8196 45 1 -4.6676 4.7998 6.8181 46 1 -2.6621 3.3308 4.2645 47 1 -2.1861 3.8896 5.8874 48 1 -0.5435 2.2650 4.8824 49 1 0.1802 3.8484 5.2540 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858202471.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:07 Heat of formation + Delta-G solvation = -6.519926 kcal Electronic energy + Delta-G solvation = -27910.520062 eV Core-core repulsion = 24067.842838 eV Total energy + Delta-G solvation = -3842.677224 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.14307 -38.45619 -37.62719 -36.30491 -34.25591 -33.24510 -32.32453 -31.48197 -30.03460 -29.39542 -28.85391 -26.74997 -25.02590 -23.91921 -22.40808 -22.10237 -21.21376 -20.53759 -19.42362 -18.29421 -17.84016 -16.98475 -16.65008 -16.47242 -15.99344 -15.53117 -15.24334 -14.93603 -14.57361 -14.21407 -13.92317 -13.73482 -13.62304 -13.53520 -13.36528 -13.04248 -12.85679 -12.55293 -12.29292 -11.98426 -11.90809 -11.58713 -11.43697 -11.31791 -11.09737 -10.82375 -10.69943 -10.49433 -10.33211 -10.24400 -10.04751 -10.01279 -9.97286 -9.84342 -9.68924 -9.50639 -8.90566 -8.56389 -8.40999 -6.66672 -5.78811 -3.20639 2.82053 2.99744 3.12310 3.37403 3.40296 3.44359 3.46603 3.53121 4.36557 4.46346 4.50155 4.59222 4.66743 4.87279 4.98185 5.01291 5.10629 5.14992 5.27498 5.32892 5.35937 5.43119 5.45122 5.48874 5.54018 5.59564 5.65274 5.83853 5.94139 6.11306 6.22825 6.32295 6.40900 6.50526 6.53724 6.61043 6.65126 6.77489 6.83058 6.95530 7.02708 7.17029 7.34058 7.63648 7.79966 7.95207 8.23045 8.45698 8.87505 9.21841 9.85246 10.42536 11.30194 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.016166 B = 0.002700 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.629037 B =10369.343271 C =11594.991608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.197 4.197 3 C -0.016 4.016 4 C 0.173 3.827 5 H 0.094 0.906 6 C -0.125 4.125 7 C 0.061 3.939 8 O -0.395 6.395 9 C 0.032 3.968 10 N -0.749 5.749 11 C 0.701 3.299 12 O -0.577 6.577 13 N -0.741 5.741 14 C 0.172 3.828 15 C -0.138 4.138 16 C 0.148 3.852 17 N -0.593 5.593 18 C -0.251 4.251 19 H 0.065 0.935 20 C 0.001 3.999 21 N -0.903 5.903 22 Si 0.902 3.098 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.175 3.825 27 C -0.146 4.146 28 H 0.209 0.791 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.042 0.958 36 H 0.085 0.915 37 H 0.041 0.959 38 H 0.392 0.608 39 H 0.389 0.611 40 H 0.080 0.920 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.020 0.980 44 H 0.054 0.946 45 H 0.254 0.746 46 H 0.020 0.980 47 H 0.091 0.909 48 H 0.052 0.948 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.262 -8.735 -10.549 24.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.197 4.197 3 C -0.054 4.054 4 C 0.067 3.933 5 H 0.112 0.888 6 C -0.163 4.163 7 C -0.016 4.016 8 O -0.314 6.314 9 C -0.065 4.065 10 N -0.406 5.406 11 C 0.401 3.599 12 O -0.453 6.453 13 N -0.395 5.395 14 C 0.068 3.932 15 C -0.179 4.179 16 C 0.021 3.979 17 N -0.315 5.315 18 C -0.381 4.381 19 H 0.083 0.917 20 C -0.197 4.197 21 N -0.548 5.548 22 Si 0.732 3.268 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.049 3.951 27 C -0.186 4.186 28 H 0.226 0.774 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.104 0.896 37 H 0.060 0.940 38 H 0.226 0.774 39 H 0.221 0.779 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.038 0.962 44 H 0.073 0.927 45 H 0.064 0.936 46 H 0.038 0.962 47 H 0.109 0.891 48 H 0.071 0.929 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 19.480 -8.834 -11.330 24.205 hybrid contribution 0.094 0.827 1.549 1.759 sum 19.574 -8.007 -9.781 23.301 Atomic orbital electron populations 1.24676 0.95779 0.99084 0.99875 1.22447 0.93987 1.01800 1.01463 1.19061 0.86227 0.97227 1.02914 1.20655 0.92591 0.94558 0.85501 0.88826 1.21794 0.93624 0.96371 1.04479 1.22519 0.80854 0.97383 1.00803 1.87834 1.20551 1.28300 1.94692 1.22742 0.99061 0.84442 1.00231 1.45242 1.16481 1.67413 1.11496 1.15992 0.81886 0.78151 0.83900 1.90950 1.51268 1.62058 1.41030 1.45541 1.19011 1.65874 1.09044 1.20845 0.81748 0.93153 0.97477 1.22379 1.00180 0.95394 0.99911 1.20870 0.91537 0.97895 0.87601 1.44086 1.75131 1.03614 1.08712 1.19178 1.17626 0.90657 1.10653 0.91722 1.25052 0.95868 0.97713 1.01070 1.70028 1.23756 1.26960 1.34048 0.86309 0.77893 0.80590 0.82057 1.21396 1.21578 1.20524 1.20725 0.89115 0.83907 1.01381 1.22536 1.02287 0.99912 0.93861 0.77433 0.89142 0.89838 0.89233 0.90247 0.92898 0.93037 0.93952 0.89624 0.93990 0.77424 0.77894 0.90181 0.92621 0.92798 0.96236 0.92708 0.93621 0.96166 0.89110 0.92884 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.54 17.91 29.55 0.53 -2.01 16 2 C -0.20 -2.63 11.17 -37.13 -0.41 -3.05 16 3 C -0.02 -0.15 5.39 -29.52 -0.16 -0.31 16 4 C 0.17 1.56 2.24 -67.93 -0.15 1.41 16 5 H 0.09 1.07 7.57 -51.93 -0.39 0.67 16 6 C -0.12 -0.82 5.12 -26.74 -0.14 -0.96 16 7 C 0.06 0.48 5.83 37.15 0.22 0.70 16 8 O -0.39 -3.54 10.70 -35.23 -0.38 -3.91 16 9 C 0.03 0.21 11.01 101.05 1.11 1.33 16 10 N -0.75 -7.54 4.50 -58.68 -0.26 -7.81 16 11 C 0.70 10.11 7.84 -86.92 -0.68 9.43 16 12 O -0.58 -10.52 12.86 5.28 0.07 -10.45 16 13 N -0.74 -10.43 5.08 -58.64 -0.30 -10.73 16 14 C 0.17 3.02 2.42 -67.89 -0.16 2.86 16 15 C -0.14 -2.57 5.65 -26.61 -0.15 -2.72 16 16 C 0.15 3.23 6.52 -3.71 -0.02 3.20 16 17 N -0.59 -14.90 2.99 -172.32 -0.52 -15.42 16 18 C -0.25 -6.90 9.58 -15.06 -0.14 -7.05 16 19 H 0.07 1.75 7.89 -52.49 -0.41 1.33 16 20 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 21 N -0.90 -26.16 11.19 55.49 0.62 -25.54 16 22 Si 0.90 21.58 29.59 -169.99 -5.03 16.55 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 C 0.18 4.14 5.30 -3.71 -0.02 4.12 16 27 C -0.15 -2.70 5.55 -26.61 -0.15 -2.84 16 28 H 0.21 2.61 7.80 -54.08 -0.42 2.19 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.43 7.75 -51.93 -0.40 0.02 16 34 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 35 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.39 2.94 8.62 -40.82 -0.35 2.58 16 39 H 0.39 4.42 8.62 -40.82 -0.35 4.07 16 40 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.05 1.17 7.93 -51.93 -0.41 0.76 16 45 H 0.25 7.09 8.31 -40.82 -0.34 6.76 16 46 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.09 2.38 6.06 -51.92 -0.31 2.06 16 48 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 396.79 15.07 5.98 5.98 Total: -1.00 -33.38 396.79 -8.75 -42.13 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -8.51 Total: 5.14 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -0.42 Total: 4.07 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: -0.46 Total: -59.50 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.31 Total: -14.36 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.38 -8.75 -42.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858202471.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.608 kcal (2) G-P(sol) polarization free energy of solvation -33.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds