Wall clock time and date at job start Fri Apr 10 2020 18:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47253 * 187.91622 * 3 2 1 5 5 H 1.08995 * 109.47375 * 305.00237 * 4 3 2 6 6 C 1.52996 * 109.47425 * 184.99582 * 4 3 2 7 7 C 1.52994 * 109.47324 * 175.00062 * 6 4 3 8 8 O 1.42899 * 109.47346 * 180.02562 * 7 6 4 9 9 C 1.42905 * 114.00116 * 180.02562 * 8 7 6 10 10 N 1.46501 * 109.46961 * 64.99918 * 4 3 2 11 11 C 1.34774 * 120.00162 * 275.00208 * 10 4 3 12 12 O 1.21598 * 120.00013 * 359.97438 * 11 10 4 13 13 N 1.34778 * 120.00697 * 180.02562 * 11 10 4 14 14 C 1.46495 * 120.00474 * 179.97438 * 13 11 10 15 15 C 1.53040 * 109.46101 * 275.02584 * 14 13 11 16 16 C 1.53193 * 109.31494 * 178.59848 * 15 14 13 17 17 N 1.46929 * 108.75892 * 54.65850 * 16 15 14 18 18 C 1.36938 * 120.62858 * 126.36547 * 17 16 15 19 19 H 1.08001 * 119.99912 * 331.85638 * 18 17 16 20 20 C 1.38815 * 120.00337 * 151.85760 * 18 17 16 21 21 N 1.31621 * 119.99483 * 343.06849 * 20 18 17 22 22 Si 1.86796 * 120.00135 * 163.06512 * 20 18 17 23 23 H 1.48499 * 109.47194 * 90.00358 * 22 20 18 24 24 H 1.48509 * 109.46942 * 210.00098 * 22 20 18 25 25 H 1.48497 * 109.47214 * 329.99617 * 22 20 18 26 26 C 1.46917 * 118.73996 * 306.37973 * 17 16 15 27 27 C 1.53036 * 109.46054 * 154.97202 * 14 13 11 28 28 H 4.44652 * 5.63409 * 179.97438 * 4 1 2 29 29 H 1.08992 * 109.47512 * 67.91626 * 3 2 1 30 30 H 1.09003 * 109.47071 * 307.91812 * 3 2 1 31 31 H 1.09000 * 109.46742 * 55.00223 * 6 4 3 32 32 H 1.08998 * 109.47367 * 295.00504 * 6 4 3 33 33 H 1.08994 * 109.47315 * 60.00006 * 7 6 4 34 34 H 1.09008 * 109.47204 * 300.00336 * 7 6 4 35 35 H 1.09001 * 109.47031 * 60.00012 * 9 8 7 36 36 H 1.08997 * 109.46862 * 179.97438 * 9 8 7 37 37 H 1.09004 * 109.47155 * 299.99791 * 9 8 7 38 38 H 0.96997 * 120.00438 * 95.00463 * 10 4 3 39 39 H 0.97000 * 119.99336 * 0.02562 * 13 11 10 40 40 H 1.08994 * 109.46256 * 35.00034 * 14 13 11 41 41 H 1.09005 * 109.49973 * 298.57103 * 15 14 13 42 42 H 1.09000 * 109.49852 * 58.66033 * 15 14 13 43 43 H 1.08996 * 109.59644 * 294.86966 * 16 15 14 44 44 H 1.08998 * 109.70048 * 174.50775 * 16 15 14 45 45 H 0.96999 * 119.99646 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.59261 * 293.82725 * 26 17 16 47 47 H 1.09007 * 109.70687 * 173.47036 * 26 17 16 48 48 H 1.09000 * 109.49943 * 301.34149 * 27 14 13 49 49 H 1.09002 * 109.49847 * 61.40183 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.4296 0.1987 5 1 2.7205 2.0793 -0.5608 6 6 4.6802 1.4495 0.0745 7 6 5.1792 2.8938 0.1487 8 8 6.6033 2.9124 0.0322 9 6 7.1742 4.2212 0.0902 10 7 2.7676 1.9058 1.5288 11 6 1.5500 2.4508 1.7209 12 8 0.7736 2.5479 0.7902 13 7 1.1933 2.8894 2.9444 14 6 -0.1299 3.4824 3.1531 15 6 -0.0847 4.9693 2.7936 16 6 -1.4782 5.5781 2.9795 17 7 -1.9356 5.3020 4.3483 18 6 -2.3562 6.3200 5.1619 19 1 -1.9615 7.3164 5.0282 20 6 -3.2900 6.0714 6.1584 21 7 -4.0148 4.9733 6.1219 22 14 -3.5179 7.2951 7.5512 23 1 -4.5546 8.2887 7.1726 24 1 -3.9466 6.5753 8.7774 25 1 -2.2337 7.9940 7.8111 26 6 -1.9328 3.9132 4.8275 27 6 -0.5344 3.3230 4.6204 28 1 -1.0502 -0.0003 -0.0002 29 1 3.0095 -0.3855 -0.9522 30 1 3.0096 -0.6307 0.8107 31 1 4.9726 1.0126 -0.8804 32 1 5.1185 0.8713 0.8879 33 1 4.8867 3.3307 1.1035 34 1 4.7408 3.4720 -0.6648 35 1 6.9235 4.6850 1.0442 36 1 8.2576 4.1494 -0.0050 37 1 6.7770 4.8273 -0.7241 38 1 3.3870 1.8288 2.2712 39 1 1.8132 2.8130 3.6866 40 1 -0.8583 2.9774 2.5188 41 1 0.6253 5.4796 3.4444 42 1 0.2262 5.0832 1.7551 43 1 -2.1704 5.1315 2.2658 44 1 -1.4328 6.6553 2.8196 45 1 -4.6676 4.7998 6.8181 46 1 -2.6621 3.3308 4.2645 47 1 -2.1861 3.8896 5.8874 48 1 -0.5435 2.2650 4.8824 49 1 0.1802 3.8484 5.2540 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858202471.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:06 Heat of formation + Delta-G solvation = -29.260150 kcal Electronic energy + Delta-G solvation = -27911.506153 eV Core-core repulsion = 24067.842838 eV Total energy + Delta-G solvation = -3843.663314 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.25295 -39.44962 -38.79470 -37.35597 -35.80718 -34.37088 -33.74722 -32.66979 -31.67920 -30.88577 -29.83039 -27.32224 -26.86905 -24.74750 -23.97087 -23.68274 -22.18293 -21.63269 -21.04087 -19.46921 -18.94610 -18.51300 -17.69900 -17.18331 -16.95547 -16.71180 -16.41798 -16.06801 -15.92032 -15.49332 -15.34452 -15.13055 -14.85235 -14.76143 -14.53715 -14.16704 -14.07186 -13.93584 -13.62750 -13.19920 -13.00827 -12.62659 -12.59618 -12.53572 -12.50020 -12.21909 -12.15476 -12.02021 -11.93117 -11.87025 -11.53556 -11.43197 -11.26487 -11.06494 -10.86652 -10.61025 -10.55817 -9.98141 -9.67568 -8.71096 -7.88294 -5.33987 1.48005 1.49028 1.59301 1.78637 2.02196 2.08892 2.37643 2.51772 2.80153 3.26222 3.38109 3.63874 3.66909 3.92411 3.97703 4.07204 4.09180 4.19400 4.36421 4.39593 4.42755 4.46612 4.54306 4.57624 4.64651 4.65502 4.78935 4.82400 4.85894 4.87733 4.89605 5.01826 5.07399 5.08492 5.16790 5.19978 5.27588 5.30164 5.46925 5.63811 5.66919 5.68626 5.70107 6.13083 6.21419 6.38598 6.93133 7.13976 7.24171 7.77530 7.83511 8.36796 9.18983 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.016166 B = 0.002700 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.629037 B =10369.343271 C =11594.991608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.193 4.193 3 C -0.020 4.020 4 C 0.178 3.822 5 H 0.069 0.931 6 C -0.111 4.111 7 C 0.059 3.941 8 O -0.409 6.409 9 C 0.026 3.974 10 N -0.731 5.731 11 C 0.698 3.302 12 O -0.616 6.616 13 N -0.731 5.731 14 C 0.186 3.814 15 C -0.121 4.121 16 C 0.145 3.855 17 N -0.608 5.608 18 C -0.264 4.264 19 H 0.067 0.933 20 C -0.050 4.050 21 N -0.936 5.936 22 Si 0.970 3.030 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.268 1.268 26 C 0.180 3.820 27 C -0.127 4.127 28 H 0.209 0.791 29 H 0.118 0.882 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.051 0.949 34 H 0.043 0.957 35 H 0.045 0.955 36 H 0.099 0.901 37 H 0.044 0.956 38 H 0.409 0.591 39 H 0.406 0.594 40 H 0.052 0.948 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.005 0.995 44 H 0.056 0.944 45 H 0.251 0.749 46 H -0.008 1.008 47 H 0.063 0.937 48 H 0.073 0.927 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.498 -9.034 -10.179 27.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.193 4.193 3 C -0.057 4.057 4 C 0.072 3.928 5 H 0.087 0.913 6 C -0.149 4.149 7 C -0.018 4.018 8 O -0.329 6.329 9 C -0.071 4.071 10 N -0.389 5.389 11 C 0.398 3.602 12 O -0.496 6.496 13 N -0.386 5.386 14 C 0.081 3.919 15 C -0.161 4.161 16 C 0.019 3.981 17 N -0.332 5.332 18 C -0.394 4.394 19 H 0.085 0.915 20 C -0.245 4.245 21 N -0.582 5.582 22 Si 0.797 3.203 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.193 1.193 26 C 0.054 3.946 27 C -0.167 4.167 28 H 0.226 0.774 29 H 0.136 0.864 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.116 0.884 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.117 0.883 37 H 0.062 0.938 38 H 0.246 0.754 39 H 0.242 0.758 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.023 0.977 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.010 0.990 47 H 0.081 0.919 48 H 0.091 0.909 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 22.798 -9.149 -10.959 26.899 hybrid contribution -0.899 0.927 1.339 1.860 sum 21.899 -8.222 -9.620 25.293 Atomic orbital electron populations 1.25106 0.96785 1.00692 1.01670 1.23423 0.95419 1.00428 1.00018 1.19351 0.83494 0.97569 1.05319 1.20663 0.94162 0.93937 0.84006 0.91321 1.21688 0.91231 0.95894 1.06055 1.22547 0.80655 0.98153 1.00424 1.87802 1.20840 1.29458 1.94766 1.22894 0.99877 0.83761 1.00524 1.45089 1.15079 1.65986 1.12717 1.16144 0.82725 0.78143 0.83223 1.90943 1.52823 1.63533 1.42263 1.45137 1.17925 1.65666 1.09872 1.20374 0.83037 0.92414 0.96109 1.22157 0.97867 0.95846 1.00255 1.20956 0.93091 0.98233 0.85812 1.44340 1.75342 1.03722 1.09797 1.19518 1.17488 0.91355 1.11084 0.91505 1.25834 0.95765 0.99598 1.03349 1.70190 1.24478 1.28844 1.34698 0.85253 0.78014 0.78275 0.78738 1.21351 1.21739 1.19297 1.20542 0.91631 0.83435 0.99025 1.22241 0.98976 1.00795 0.94660 0.77401 0.86373 0.87623 0.87753 0.88431 0.93051 0.93862 0.93620 0.88273 0.93776 0.75424 0.75820 0.92951 0.91738 0.92466 0.97737 0.92548 0.94004 0.98966 0.91886 0.90856 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -6.62 17.91 74.32 1.33 -5.29 16 2 C -0.19 -4.98 11.17 31.12 0.35 -4.64 16 3 C -0.02 -0.30 5.39 28.79 0.16 -0.15 16 4 C 0.18 2.75 2.24 44.99 0.10 2.86 16 5 H 0.07 1.47 7.57 -2.39 -0.02 1.46 16 6 C -0.11 -1.08 5.12 30.59 0.16 -0.93 16 7 C 0.06 0.79 5.83 71.98 0.42 1.21 16 8 O -0.41 -6.33 10.70 -148.98 -1.59 -7.92 16 9 C 0.03 0.29 11.01 113.37 1.25 1.54 16 10 N -0.73 -12.82 4.50 -457.81 -2.06 -14.88 16 11 C 0.70 19.08 7.84 179.05 1.40 20.49 16 12 O -0.62 -22.38 12.86 -4.02 -0.05 -22.43 16 13 N -0.73 -19.15 5.08 -457.69 -2.33 -21.47 16 14 C 0.19 6.43 2.42 45.02 0.11 6.54 16 15 C -0.12 -4.40 5.65 30.67 0.17 -4.23 16 16 C 0.15 6.43 6.52 86.36 0.56 6.99 16 17 N -0.61 -31.12 2.99 -699.10 -2.09 -33.22 16 18 C -0.26 -14.64 9.58 84.03 0.81 -13.84 16 19 H 0.07 3.60 7.89 -2.91 -0.02 3.58 16 20 C -0.05 -2.80 4.92 84.86 0.42 -2.39 16 21 N -0.94 -55.60 11.19 21.65 0.24 -55.36 16 22 Si 0.97 44.63 29.59 68.60 2.03 46.66 16 23 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 24 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 26 C 0.18 8.72 5.30 86.36 0.46 9.17 16 27 C -0.13 -4.58 5.55 30.67 0.17 -4.41 16 28 H 0.21 5.64 7.80 -4.41 -0.03 5.60 16 29 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.10 0.79 8.14 -2.39 -0.02 0.78 16 32 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.05 0.69 7.75 -2.39 -0.02 0.68 16 34 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16 35 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.04 0.47 8.14 -2.39 -0.02 0.46 16 38 H 0.41 4.61 8.62 -92.71 -0.80 3.81 16 39 H 0.41 7.95 8.62 -92.71 -0.80 7.15 16 40 H 0.05 2.14 7.58 -2.39 -0.02 2.12 16 41 H 0.06 2.25 8.14 -2.38 -0.02 2.24 16 42 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 44 H 0.06 2.43 7.93 -2.39 -0.02 2.41 16 45 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 46 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 47 H 0.06 3.40 6.06 -2.38 -0.01 3.38 16 48 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 49 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -74.36 396.79 1.34 -73.02 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: -0.67 Total: 22.66 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: 7.86 Total: 12.94 kcal Atomic # 7 Polarization: -118.69 SS G_CDS: -6.23 Total: -124.92 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -1.65 Total: -30.36 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -74.36 1.34 -73.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858202471.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.760 kcal (2) G-P(sol) polarization free energy of solvation -74.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds