Wall clock time and date at job start Fri Apr 10 2020 18:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86803 * 120.00212 * 2 1 4 4 H 1.48501 * 109.46676 * 274.68856 * 3 2 1 5 5 H 1.48500 * 109.46943 * 34.68626 * 3 2 1 6 6 H 1.48493 * 109.47168 * 154.68703 * 3 2 1 7 7 C 1.39935 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99759 * 197.74399 * 7 2 1 9 9 C 1.41438 * 120.00037 * 17.74789 * 7 2 1 10 10 C 1.40789 * 120.17446 * 204.35168 * 9 7 2 11 11 C 1.37718 * 120.03809 * 179.97438 * 10 9 7 12 12 C 1.38370 * 120.40873 * 0.04723 * 11 10 9 13 13 C 1.39883 * 120.36174 * 359.95299 * 12 11 10 14 14 C 1.47882 * 120.02348 * 180.02562 * 13 12 11 15 15 O 1.21544 * 119.99899 * 180.27481 * 14 13 12 16 16 N 1.34774 * 120.00262 * 359.97438 * 14 13 12 17 17 N 1.36603 * 120.00109 * 180.02562 * 16 14 13 18 18 C 1.46476 * 110.99749 * 245.85512 * 17 16 14 19 19 C 1.53181 * 109.89989 * 163.00017 * 18 17 16 20 20 S 1.81816 * 108.67894 * 62.63585 * 19 18 17 21 21 O 1.42101 * 108.70022 * 193.43144 * 20 19 18 22 22 O 1.42095 * 108.82942 * 61.98759 * 20 19 18 23 23 C 1.81818 * 101.01706 * 307.68241 * 20 19 18 24 24 C 1.46468 * 111.00457 * 120.00186 * 17 16 14 25 25 C 1.39027 * 119.94878 * 0.29987 * 13 12 11 26 26 H 0.96999 * 119.99708 * 0.02562 * 1 2 3 27 27 H 1.07994 * 119.98354 * 359.97438 * 10 9 7 28 28 H 1.07996 * 119.79111 * 180.02562 * 11 10 9 29 29 H 1.08004 * 119.81521 * 179.97438 * 12 11 10 30 30 H 0.97002 * 120.00211 * 0.02562 * 16 14 13 31 31 H 1.09002 * 109.39863 * 283.13216 * 18 17 16 32 32 H 1.08999 * 109.40051 * 42.86712 * 18 17 16 33 33 H 1.09003 * 109.59969 * 302.87642 * 19 18 17 34 34 H 1.09004 * 109.60125 * 182.39315 * 19 18 17 35 35 H 1.08994 * 109.60469 * 292.55762 * 23 20 19 36 36 H 1.09005 * 109.60230 * 172.07437 * 23 20 19 37 37 H 1.09004 * 109.39447 * 317.12965 * 24 17 16 38 38 H 1.09000 * 109.40238 * 76.86017 * 24 17 16 39 39 H 1.07997 * 120.20543 * 179.70706 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3907 2.1035 -1.3954 5 1 1.4929 2.6220 0.7968 6 1 3.5859 1.4136 0.5986 7 6 2.0079 -1.2119 0.0005 8 1 3.0494 -1.2340 0.2856 9 6 1.3512 -2.4078 -0.3723 10 6 1.8275 -3.6500 0.0884 11 6 1.1856 -4.8126 -0.2759 12 6 0.0716 -4.7703 -1.0957 13 6 -0.4161 -3.5454 -1.5632 14 6 -1.6075 -3.5088 -2.4385 15 8 -2.0279 -2.4447 -2.8485 16 7 -2.2235 -4.6559 -2.7865 17 7 -3.3237 -4.6221 -3.5954 18 6 -4.5170 -5.0765 -2.8777 19 6 -5.7768 -4.6421 -3.6332 20 16 -5.7826 -5.4438 -5.2651 21 8 -6.7634 -4.8145 -6.0783 22 8 -5.8279 -6.8524 -5.0839 23 6 -4.1341 -4.9879 -5.8820 24 6 -3.0916 -5.3766 -4.8292 25 6 0.2235 -2.3629 -1.2090 26 1 -0.4850 0.8401 -0.0004 27 1 2.6968 -3.6911 0.7279 28 1 1.5541 -5.7632 0.0801 29 1 -0.4241 -5.6880 -1.3758 30 1 -1.8857 -5.5055 -2.4625 31 1 -4.4995 -6.1634 -2.7978 32 1 -4.5261 -4.6414 -1.8784 33 1 -5.7734 -3.5592 -3.7576 34 1 -6.6617 -4.9455 -3.0736 35 1 -4.0936 -3.9129 -6.0573 36 1 -3.9313 -5.5202 -6.8113 37 1 -2.0941 -5.1534 -5.2077 38 1 -3.1679 -6.4438 -4.6208 39 1 -0.1466 -1.4153 -1.5714 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000862736872.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:14 Heat of formation + Delta-G solvation = -66.806419 kcal Electronic energy + Delta-G solvation = -24930.848191 eV Core-core repulsion = 21158.924768 eV Total energy + Delta-G solvation = -3771.923423 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.29452 -39.48641 -38.42194 -37.99286 -37.15749 -35.62578 -34.54010 -32.97595 -32.10405 -31.26447 -29.30301 -27.14158 -25.20973 -24.48419 -22.97557 -22.58066 -21.34590 -20.02537 -19.50729 -19.01022 -17.72784 -17.43231 -17.40986 -16.98002 -16.94142 -16.70545 -16.43182 -15.69814 -15.32470 -15.31808 -15.00718 -14.55430 -14.26402 -14.20536 -13.85917 -13.60833 -13.55193 -13.43170 -13.28945 -13.15227 -12.95688 -12.88644 -12.80658 -12.52051 -12.18059 -11.88623 -11.85013 -11.49803 -11.19446 -11.07370 -10.84192 -10.43671 -9.95968 -9.48660 -9.37572 -8.65984 -6.36919 -1.01299 0.38794 1.02125 1.38133 1.44716 1.48890 1.52049 1.62610 2.11843 2.20262 2.62083 2.79558 2.95467 3.13619 3.40332 3.71261 3.72797 3.85777 3.98083 3.98618 4.09172 4.21060 4.43892 4.58961 4.60459 4.63431 4.76959 4.83223 4.91497 5.10067 5.19906 5.32648 5.52397 5.56817 5.85500 5.92921 6.04336 6.10223 6.29072 6.47299 6.65611 6.89632 6.95369 7.53695 8.30661 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.022423 B = 0.002899 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.419323 B = 9654.693474 C =10465.201439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.031 3.969 3 Si 0.980 3.020 4 H -0.267 1.267 5 H -0.270 1.270 6 H -0.252 1.252 7 C -0.497 4.497 8 H 0.083 0.917 9 C 0.068 3.932 10 C -0.217 4.217 11 C -0.095 4.095 12 C -0.196 4.196 13 C -0.132 4.132 14 C 0.582 3.418 15 O -0.561 6.561 16 N -0.561 5.561 17 N -0.338 5.338 18 C 0.041 3.959 19 C -0.585 4.585 20 S 2.434 3.566 21 O -0.977 6.977 22 O -0.964 6.964 23 C -0.583 4.583 24 C 0.041 3.959 25 C -0.128 4.128 26 H 0.286 0.714 27 H 0.106 0.894 28 H 0.138 0.862 29 H 0.139 0.861 30 H 0.403 0.597 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.148 0.852 34 H 0.167 0.833 35 H 0.149 0.851 36 H 0.170 0.830 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.427 -11.785 -7.007 15.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.184 4.184 3 Si 0.801 3.199 4 H -0.192 1.192 5 H -0.194 1.194 6 H -0.175 1.175 7 C -0.526 4.526 8 H 0.101 0.899 9 C 0.066 3.934 10 C -0.236 4.236 11 C -0.113 4.113 12 C -0.216 4.216 13 C -0.137 4.137 14 C 0.372 3.628 15 O -0.438 6.438 16 N -0.308 5.308 17 N -0.157 5.157 18 C -0.087 4.087 19 C -0.717 4.717 20 S 2.620 3.380 21 O -0.974 6.974 22 O -0.962 6.962 23 C -0.715 4.715 24 C -0.086 4.086 25 C -0.149 4.149 26 H 0.097 0.903 27 H 0.125 0.875 28 H 0.156 0.844 29 H 0.156 0.844 30 H 0.246 0.754 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.166 0.834 34 H 0.185 0.815 35 H 0.167 0.833 36 H 0.188 0.812 37 H 0.124 0.876 38 H 0.106 0.894 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.692 -10.944 -7.815 16.012 hybrid contribution 0.981 0.477 0.787 1.345 sum -7.711 -10.467 -7.027 14.778 Atomic orbital electron populations 1.69876 1.09115 1.30578 1.35282 1.26798 0.95400 1.04793 0.91382 0.85211 0.79373 0.76102 0.79186 1.19204 1.19442 1.17528 1.19872 0.98531 0.92235 1.41986 0.89935 1.17925 0.91839 0.93826 0.89856 1.21417 1.03812 0.92859 1.05560 1.20924 0.95406 0.97633 0.97364 1.20860 1.00427 0.95063 1.05216 1.19622 0.96513 0.95544 1.01973 1.18597 0.82416 0.82820 0.78971 1.90676 1.66431 1.31350 1.55366 1.44784 1.26528 1.09073 1.50395 1.61667 0.95253 1.57351 1.01399 1.22383 0.86060 1.00909 0.99354 1.30147 1.05381 1.15476 1.20673 1.07429 0.77557 0.75033 0.78024 1.93558 1.58102 1.78454 1.67272 1.93555 1.86952 1.29399 1.86258 1.30130 1.17777 1.14379 1.09209 1.22386 1.01430 0.97521 0.87300 1.21425 0.98125 0.96463 0.98871 0.90296 0.87547 0.84421 0.84359 0.75387 0.89446 0.88367 0.83419 0.81499 0.83276 0.81203 0.87633 0.89399 0.88209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.58 10.96 21.82 0.24 -44.34 16 2 C 0.03 1.60 5.14 85.25 0.44 2.04 16 3 Si 0.98 38.72 29.59 68.60 2.03 40.75 16 4 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 5 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 6 H -0.25 -9.42 7.11 99.48 0.71 -8.72 16 7 C -0.50 -26.27 9.05 23.47 0.21 -26.06 16 8 H 0.08 4.14 7.91 -2.91 -0.02 4.12 16 9 C 0.07 3.54 5.57 -21.32 -0.12 3.42 16 10 C -0.22 -9.62 9.78 22.77 0.22 -9.40 16 11 C -0.10 -3.49 10.01 22.18 0.22 -3.27 16 12 C -0.20 -6.93 9.55 22.70 0.22 -6.71 16 13 C -0.13 -5.74 5.87 -20.14 -0.12 -5.86 16 14 C 0.58 23.28 7.88 86.80 0.68 23.97 16 15 O -0.56 -27.38 16.66 -3.85 -0.06 -27.45 16 16 N -0.56 -15.34 4.67 -175.59 -0.82 -16.16 16 17 N -0.34 -7.82 4.26 -515.27 -2.19 -10.01 16 18 C 0.04 0.73 5.69 86.44 0.49 1.22 16 19 C -0.59 -8.45 6.58 72.04 0.47 -7.98 16 20 S 2.43 39.27 5.34 -56.49 -0.30 38.97 16 21 O -0.98 -23.11 18.11 -127.39 -2.31 -25.41 16 22 O -0.96 -20.27 18.10 -127.39 -2.31 -22.58 16 23 C -0.58 -7.79 6.58 72.04 0.47 -7.31 16 24 C 0.04 0.69 5.68 86.44 0.49 1.18 16 25 C -0.13 -6.76 8.24 23.01 0.19 -6.57 16 26 H 0.29 14.32 8.30 -92.71 -0.77 13.55 16 27 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 28 H 0.14 3.87 8.06 -2.91 -0.02 3.84 16 29 H 0.14 3.47 6.38 -2.91 -0.02 3.45 16 30 H 0.40 8.34 6.85 -215.49 -1.48 6.87 16 31 H 0.09 1.13 7.93 -2.39 -0.02 1.11 16 32 H 0.10 1.98 8.11 -2.39 -0.02 1.96 16 33 H 0.15 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.17 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.15 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.17 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.11 1.84 8.11 -2.38 -0.02 1.82 16 38 H 0.09 1.04 7.93 -2.39 -0.02 1.02 16 39 H 0.10 5.91 5.75 -2.91 -0.02 5.90 16 Total: -1.00 -78.20 340.57 -2.23 -80.43 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: -0.38 Total: 27.14 kcal Atomic # 6 Polarization: -45.22 SS G_CDS: 3.88 Total: -41.34 kcal Atomic # 7 Polarization: -67.74 SS G_CDS: -2.78 Total: -70.52 kcal Atomic # 8 Polarization: -70.76 SS G_CDS: -4.68 Total: -75.44 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Atomic # 16 Polarization: 39.27 SS G_CDS: -0.30 Total: 38.97 kcal Total: -78.20 -2.23 -80.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862736872.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.626 kcal (2) G-P(sol) polarization free energy of solvation -78.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds