Wall clock time and date at job start Fri Apr 10 2020 18:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86798 * 119.99909 * 2 1 4 4 H 1.48507 * 109.47323 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47287 * 300.00356 * 3 2 1 6 6 H 1.48494 * 109.47052 * 60.00559 * 3 2 1 7 7 C 1.39946 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00222 * 167.07553 * 7 2 1 9 9 C 1.41400 * 120.00139 * 347.07938 * 7 2 1 10 10 C 1.40729 * 120.24135 * 332.14023 * 9 7 2 11 11 C 1.37598 * 119.74504 * 179.72615 * 10 9 7 12 12 C 1.38651 * 120.24620 * 0.24799 * 11 10 9 13 13 C 1.38609 * 120.50450 * 0.02562 * 12 11 10 14 14 C 1.37637 * 120.25082 * 359.97438 * 13 12 11 15 15 S 1.76194 * 120.13234 * 180.02562 * 14 13 12 16 16 O 1.42108 * 106.40282 * 224.87180 * 15 14 13 17 17 O 1.42094 * 106.40293 * 357.78960 * 15 14 13 18 18 N 1.65596 * 107.21913 * 111.32967 * 15 14 13 19 19 C 1.46071 * 119.81243 * 95.84868 * 18 15 14 20 20 C 1.52443 * 111.51722 * 242.91802 * 19 18 15 21 21 C 1.53039 * 110.17194 * 297.33267 * 20 19 18 22 22 N 1.46699 * 109.07327 * 88.68099 * 21 20 19 23 23 C 1.34250 * 120.36570 * 288.74846 * 22 21 20 24 24 O 1.21277 * 120.34797 * 177.08418 * 23 22 21 25 25 C 1.46668 * 119.81331 * 275.57568 * 18 15 14 26 26 H 0.96999 * 119.99870 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.12870 * 359.97438 * 10 9 7 28 28 H 1.07997 * 119.87196 * 180.22894 * 11 10 9 29 29 H 1.08004 * 119.74529 * 180.02562 * 12 11 10 30 30 H 1.08008 * 119.87908 * 180.02562 * 13 12 11 31 31 H 1.09000 * 109.06988 * 3.44199 * 19 18 15 32 32 H 1.09005 * 109.07039 * 122.45550 * 19 18 15 33 33 H 1.09004 * 109.35637 * 57.54125 * 20 19 18 34 34 H 1.09003 * 109.35717 * 177.26019 * 20 19 18 35 35 H 1.09006 * 109.53594 * 208.55797 * 21 20 19 36 36 H 1.08997 * 109.53380 * 328.79899 * 21 20 19 37 37 H 0.96992 * 119.81838 * 108.72366 * 22 21 20 38 38 H 1.09003 * 109.59796 * 217.79819 * 25 18 15 39 39 H 1.09000 * 109.59528 * 338.26337 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8834 2.3965 -1.2124 6 1 1.8835 2.3963 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0675 -1.2237 -0.2098 9 6 1.3278 -2.4212 0.2727 10 6 0.1778 -2.4199 1.0839 11 6 -0.4793 -3.6017 1.3386 12 6 -0.0094 -4.7914 0.8036 13 6 1.1255 -4.8053 0.0079 14 6 1.7988 -3.6352 -0.2601 15 16 3.2407 -3.6565 -1.2725 16 8 4.2025 -2.8403 -0.6181 17 8 3.4755 -5.0172 -1.6079 18 7 2.8579 -2.8855 -2.6871 19 6 3.1766 -1.4695 -2.8518 20 6 1.9171 -0.6305 -3.0348 21 6 1.1861 -1.0479 -4.3129 22 7 0.2525 -2.1347 -3.9980 23 6 0.7129 -3.3613 -3.7050 24 8 -0.0558 -4.2461 -3.3933 25 6 2.2062 -3.6297 -3.7700 26 1 -0.4850 0.8400 0.0004 27 1 -0.1898 -1.4943 1.5017 28 1 -1.3641 -3.6025 1.9578 29 1 -0.5318 -5.7142 1.0084 30 1 1.4823 -5.7378 -0.4040 31 1 3.7122 -1.1201 -1.9691 32 1 3.8150 -1.3476 -3.7269 33 1 1.2586 -0.7757 -2.1783 34 1 2.1913 0.4221 -3.1053 35 1 0.6337 -0.1968 -4.7113 36 1 1.9104 -1.3918 -5.0512 37 1 -0.7027 -1.9662 -4.0011 38 1 2.5979 -3.2955 -4.7307 39 1 2.3956 -4.6960 -3.6463 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866713784.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:18 Heat of formation + Delta-G solvation = -105.361695 kcal Electronic energy + Delta-G solvation = -27886.399094 eV Core-core repulsion = 24112.803789 eV Total energy + Delta-G solvation = -3773.595305 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.89409 -39.37682 -38.33581 -37.79558 -36.74838 -35.69219 -35.51866 -32.35788 -31.99494 -31.33003 -28.36006 -27.33836 -26.21692 -23.53591 -22.95555 -22.38415 -21.04182 -19.90325 -19.46160 -19.02070 -17.99146 -17.92764 -17.46757 -17.09580 -16.89458 -16.04422 -15.88558 -15.26000 -15.10923 -14.91442 -14.71605 -14.64875 -14.44294 -14.23746 -13.79042 -13.66243 -13.21475 -13.18549 -13.10964 -12.99133 -12.89457 -12.77276 -12.44024 -12.26139 -12.18812 -12.05451 -11.64737 -11.58491 -11.17013 -10.97268 -10.91093 -9.98902 -9.88423 -9.73775 -9.40945 -8.75075 -6.55692 -0.26785 0.56292 0.99671 1.41955 1.49778 1.55328 1.56224 2.18728 2.32397 2.51427 2.65031 2.94219 3.51233 3.61605 3.69079 3.90668 4.14460 4.21011 4.29825 4.45784 4.47613 4.51396 4.61462 4.70187 4.87018 4.89128 4.98145 5.04925 5.16182 5.25364 5.32512 5.57019 5.67268 5.75539 5.80522 5.87536 6.01220 6.01992 6.16644 6.38436 6.55975 6.73517 6.87226 7.32612 8.19769 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010939 B = 0.009081 C = 0.007468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.148407 B = 3082.506724 C = 3748.611122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.064 3.936 3 Si 0.948 3.052 4 H -0.253 1.253 5 H -0.236 1.236 6 H -0.274 1.274 7 C -0.483 4.483 8 H 0.113 0.887 9 C 0.169 3.831 10 C -0.185 4.185 11 C -0.080 4.080 12 C -0.260 4.260 13 C -0.009 4.009 14 C -0.798 4.798 15 S 2.714 3.286 16 O -0.986 6.986 17 O -1.007 7.007 18 N -0.976 5.976 19 C 0.110 3.890 20 C -0.190 4.190 21 C 0.112 3.888 22 N -0.711 5.711 23 C 0.497 3.503 24 O -0.592 6.592 25 C 0.104 3.896 26 H 0.295 0.705 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.397 0.603 38 H 0.155 0.845 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.873 6.386 -10.618 12.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.156 4.156 3 Si 0.767 3.233 4 H -0.176 1.176 5 H -0.159 1.159 6 H -0.199 1.199 7 C -0.510 4.510 8 H 0.130 0.870 9 C 0.164 3.836 10 C -0.205 4.205 11 C -0.099 4.099 12 C -0.281 4.281 13 C -0.029 4.029 14 C -0.892 4.892 15 S 2.811 3.189 16 O -0.977 6.977 17 O -0.997 6.997 18 N -0.814 5.814 19 C -0.014 4.014 20 C -0.229 4.229 21 C -0.011 4.011 22 N -0.361 5.361 23 C 0.282 3.718 24 O -0.472 6.472 25 C -0.025 4.025 26 H 0.106 0.894 27 H 0.134 0.866 28 H 0.134 0.866 29 H 0.133 0.867 30 H 0.126 0.874 31 H 0.102 0.898 32 H 0.131 0.869 33 H 0.102 0.898 34 H 0.118 0.882 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.232 0.768 38 H 0.172 0.828 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.343 5.714 -10.336 12.275 hybrid contribution -1.409 0.577 0.913 1.776 sum 1.934 6.291 -9.423 11.494 Atomic orbital electron populations 1.69865 1.08820 1.31232 1.31552 1.26538 0.95141 1.03567 0.90396 0.85669 0.80491 0.76916 0.80201 1.17585 1.15932 1.19895 1.20631 0.98339 0.90889 1.41126 0.86960 1.17290 0.90150 0.90618 0.85498 1.21562 0.99656 0.96979 1.02316 1.21178 0.98010 0.93199 0.97486 1.20766 1.00886 0.97848 1.08556 1.20425 0.93458 0.95557 0.93459 1.30133 1.29197 1.00703 1.29161 1.00666 0.73974 0.71469 0.72802 1.93431 1.60300 1.69401 1.74562 1.93410 1.86051 1.35973 1.84307 1.57123 1.74699 1.20315 1.29229 1.21556 0.97685 0.77455 1.04695 1.22739 0.98874 1.00642 1.00678 1.21902 0.93198 0.89509 0.96463 1.46023 1.10883 1.09880 1.69335 1.21798 0.92442 0.82480 0.75085 1.90722 1.60606 1.46863 1.49004 1.21916 0.87306 0.98767 0.94491 0.89351 0.86583 0.86618 0.86739 0.87420 0.89796 0.86931 0.89764 0.88215 0.87183 0.87776 0.76839 0.82792 0.87445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -34.45 10.86 21.83 0.24 -34.21 16 2 C 0.06 2.68 3.41 85.26 0.29 2.97 16 3 Si 0.95 31.49 29.52 68.60 2.03 33.52 16 4 H -0.25 -8.56 7.11 99.48 0.71 -7.85 16 5 H -0.24 -6.68 7.11 99.48 0.71 -5.97 16 6 H -0.27 -9.30 7.11 99.48 0.71 -8.59 16 7 C -0.48 -22.61 5.54 23.46 0.13 -22.48 16 8 H 0.11 5.30 3.79 -2.91 -0.01 5.29 16 9 C 0.17 8.65 5.55 -21.29 -0.12 8.53 16 10 C -0.19 -9.46 8.67 22.73 0.20 -9.27 16 11 C -0.08 -3.82 10.02 22.22 0.22 -3.60 16 12 C -0.26 -12.48 10.05 22.46 0.23 -12.25 16 13 C -0.01 -0.46 9.53 22.22 0.21 -0.25 16 14 C -0.80 -40.01 5.97 22.73 0.14 -39.88 16 15 S 2.71 119.73 5.14 -56.49 -0.29 119.44 16 16 O -0.99 -46.36 14.07 -128.00 -1.80 -48.16 16 17 O -1.01 -46.89 15.62 -128.00 -2.00 -48.89 16 18 N -0.98 -33.06 2.98 -519.43 -1.55 -34.61 16 19 C 0.11 3.05 5.02 86.28 0.43 3.48 16 20 C -0.19 -4.97 5.32 30.42 0.16 -4.81 16 21 C 0.11 2.18 6.42 86.35 0.55 2.73 16 22 N -0.71 -19.90 5.30 -461.92 -2.45 -22.34 16 23 C 0.50 17.53 7.56 88.11 0.67 18.20 16 24 O -0.59 -27.04 17.95 -3.02 -0.05 -27.10 16 25 C 0.10 3.07 5.75 85.97 0.49 3.57 16 26 H 0.30 11.46 8.30 -92.71 -0.77 10.69 16 27 H 0.12 5.93 6.24 -2.91 -0.02 5.91 16 28 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 29 H 0.11 4.83 8.06 -2.91 -0.02 4.80 16 30 H 0.11 5.18 7.33 -2.91 -0.02 5.16 16 31 H 0.08 2.73 5.12 -2.39 -0.01 2.72 16 32 H 0.11 2.00 8.08 -2.38 -0.02 1.99 16 33 H 0.08 3.01 4.62 -2.38 -0.01 2.99 16 34 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.10 1.35 6.71 -2.39 -0.02 1.33 16 37 H 0.40 11.05 8.92 -92.71 -0.83 10.23 16 38 H 0.15 2.76 7.17 -2.39 -0.02 2.74 16 39 H 0.11 3.49 6.95 -2.39 -0.02 3.47 16 Total: -1.00 -70.19 317.21 -1.97 -72.16 By element: Atomic # 1 Polarization: 42.95 SS G_CDS: 0.30 Total: 43.24 kcal Atomic # 6 Polarization: -56.66 SS G_CDS: 3.61 Total: -53.05 kcal Atomic # 7 Polarization: -87.41 SS G_CDS: -3.76 Total: -91.16 kcal Atomic # 8 Polarization: -120.29 SS G_CDS: -3.85 Total: -124.15 kcal Atomic # 14 Polarization: 31.49 SS G_CDS: 2.03 Total: 33.52 kcal Atomic # 16 Polarization: 119.73 SS G_CDS: -0.29 Total: 119.44 kcal Total: -70.19 -1.97 -72.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866713784.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.199 kcal (2) G-P(sol) polarization free energy of solvation -70.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds