Wall clock time and date at job start Fri Apr 10 2020 18:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99872 * 2 1 4 4 H 1.48502 * 109.46942 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47108 * 300.00210 * 3 2 1 6 6 H 1.48498 * 109.47060 * 60.00454 * 3 2 1 7 7 C 1.37877 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99911 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47272 * 179.97438 * 9 7 2 11 11 S 1.81399 * 109.47201 * 179.97438 * 10 9 7 12 12 O 1.42094 * 110.54154 * 68.37847 * 11 10 9 13 13 O 1.42099 * 110.54575 * 291.62292 * 11 10 9 14 14 N 1.65602 * 104.44660 * 180.02562 * 11 10 9 15 15 N 1.40095 * 120.00181 * 60.00273 * 14 11 10 16 16 C 1.46126 * 119.48929 * 89.99954 * 15 14 11 17 17 C 1.52650 * 110.98210 * 139.71190 * 16 15 14 18 18 C 1.50603 * 110.12860 * 50.53570 * 17 16 15 19 19 C 1.37837 * 120.68129 * 147.43892 * 18 17 16 20 20 C 1.38409 * 119.96947 * 179.17821 * 19 18 17 21 21 C 1.38385 * 120.41566 * 359.77128 * 20 19 18 22 22 C 1.38058 * 120.16813 * 0.26684 * 21 20 19 23 23 C 1.39324 * 119.60903 * 0.12019 * 22 21 20 24 24 C 1.34674 * 119.48919 * 270.01902 * 15 14 11 25 25 O 1.21557 * 120.34729 * 7.91265 * 24 15 14 26 26 H 0.97008 * 119.99790 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47152 * 59.99564 * 9 7 2 28 28 H 1.09003 * 109.47136 * 299.99824 * 9 7 2 29 29 H 1.09001 * 109.47158 * 59.99850 * 10 9 7 30 30 H 1.09003 * 109.47127 * 300.00112 * 10 9 7 31 31 H 0.97006 * 120.00025 * 240.00536 * 14 11 10 32 32 H 1.09003 * 109.17848 * 19.32147 * 16 15 14 33 33 H 1.09003 * 109.17642 * 260.09829 * 16 15 14 34 34 H 1.09000 * 109.35716 * 290.33768 * 17 16 15 35 35 H 1.09001 * 109.25623 * 170.67130 * 17 16 15 36 36 H 1.08003 * 120.01265 * 359.20653 * 19 18 17 37 37 H 1.07997 * 119.79753 * 179.74865 * 20 19 18 38 38 H 1.07997 * 119.91513 * 179.97438 * 21 20 19 39 39 H 1.08002 * 120.19761 * 180.10275 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 16 1.3382 -5.2330 -0.0034 12 8 0.6639 -5.4189 -1.2402 13 8 0.6647 -5.4205 1.2337 14 7 2.5205 -6.3926 -0.0038 15 7 3.4453 -6.4505 1.0470 16 6 3.1487 -7.2669 2.2221 17 6 4.3955 -8.0037 2.7046 18 6 5.5430 -7.0394 2.8514 19 6 6.4995 -7.2275 3.8259 20 6 7.5572 -6.3417 3.9367 21 6 7.6650 -5.2675 3.0709 22 6 6.7130 -5.0677 2.0912 23 6 5.6423 -5.9524 1.9812 24 6 4.5937 -5.7526 0.9586 25 8 4.7664 -4.9673 0.0471 26 1 -0.4850 0.8401 0.0004 27 1 0.6247 -2.5562 -0.8919 28 1 0.6240 -2.5575 0.8880 29 1 2.8719 -3.6051 0.8873 30 1 2.8719 -3.6035 -0.8927 31 1 2.5727 -7.0318 -0.7316 32 1 2.3787 -7.9951 1.9671 33 1 2.7811 -6.6235 3.0215 34 1 4.6618 -8.7749 1.9819 35 1 4.1881 -8.4680 3.6687 36 1 6.4239 -8.0661 4.5023 37 1 8.3029 -6.4894 4.7038 38 1 8.4934 -4.5810 3.1649 39 1 6.7976 -4.2304 1.4142 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867707338.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:21 Heat of formation + Delta-G solvation = -51.731563 kcal Electronic energy + Delta-G solvation = -25551.463097 eV Core-core repulsion = 21780.193369 eV Total energy + Delta-G solvation = -3771.269728 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.94494 -38.61400 -36.86352 -36.54252 -35.55308 -34.07031 -33.81685 -31.63254 -31.08740 -30.18845 -29.03003 -25.53462 -24.39422 -23.93202 -21.93367 -21.65521 -20.07576 -18.92507 -17.95779 -17.87259 -17.62910 -16.51996 -16.05371 -15.66544 -15.41637 -15.22672 -15.04885 -14.73802 -14.49268 -14.17664 -13.93416 -13.42569 -13.33546 -12.99950 -12.79305 -12.48712 -12.17728 -12.05374 -11.72692 -11.71191 -11.61281 -11.60581 -11.29113 -11.03323 -10.91513 -10.66722 -10.31509 -10.26492 -9.96027 -9.56054 -9.30626 -9.21317 -9.06949 -8.95842 -8.44663 -6.06676 -4.10851 0.54450 0.58984 1.04309 1.95505 2.57934 3.29884 3.36801 3.41190 3.43101 3.56193 4.14556 4.20417 4.23569 4.36495 4.43141 4.63749 4.74924 4.75772 4.85667 5.03833 5.06378 5.23596 5.28748 5.30767 5.50611 5.61126 5.71459 5.75817 5.84645 6.00286 6.04505 6.07037 6.14749 6.56760 6.62488 6.84607 7.05419 7.36322 7.41289 7.88366 8.01243 8.25214 8.93171 9.53344 11.04621 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.012398 B = 0.004416 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.972100 B = 6339.429293 C = 8039.388718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.028 3.972 10 C -0.565 4.565 11 S 2.583 3.417 12 O -0.954 6.954 13 O -0.959 6.959 14 N -0.908 5.908 15 N -0.398 5.398 16 C 0.113 3.887 17 C -0.100 4.100 18 C -0.049 4.049 19 C -0.127 4.127 20 C -0.090 4.090 21 C -0.131 4.131 22 C -0.050 4.050 23 C -0.127 4.127 24 C 0.557 3.443 25 O -0.501 6.501 26 H 0.263 0.737 27 H 0.033 0.967 28 H 0.032 0.968 29 H 0.116 0.884 30 H 0.130 0.870 31 H 0.415 0.585 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.326 -18.850 8.804 25.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.553 4.553 8 H 0.081 0.919 9 C -0.011 4.011 10 C -0.701 4.701 11 S 2.681 3.319 12 O -0.943 6.943 13 O -0.948 6.948 14 N -0.753 5.753 15 N -0.228 5.228 16 C -0.009 4.009 17 C -0.138 4.138 18 C -0.050 4.050 19 C -0.145 4.145 20 C -0.108 4.108 21 C -0.150 4.150 22 C -0.068 4.068 23 C -0.132 4.132 24 C 0.346 3.654 25 O -0.374 6.374 26 H 0.073 0.927 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.134 0.866 30 H 0.149 0.851 31 H 0.252 0.748 32 H 0.118 0.882 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.122 0.878 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 13.257 -18.429 8.413 24.210 hybrid contribution 1.034 0.819 -0.353 1.366 sum 14.291 -17.609 8.059 24.068 Atomic orbital electron populations 1.69972 1.06093 1.26971 1.50090 1.25062 0.94962 0.99487 0.95009 0.86413 0.80056 0.83162 0.77683 1.19588 1.20812 1.20849 1.21049 0.93232 0.89558 1.51454 0.91857 1.19012 0.92660 0.90763 0.98712 1.30297 1.12879 1.15876 1.10999 1.06318 0.74260 0.77017 0.74344 1.93586 1.70495 1.85245 1.44982 1.93530 1.71141 1.84724 1.45420 1.56051 1.42417 1.50734 1.26142 1.46496 1.14632 1.49513 1.12116 1.21812 0.97622 0.95217 0.86290 1.20929 0.92085 0.97100 1.03658 1.20022 0.96072 0.94790 0.94067 1.20928 0.94627 1.00323 0.98593 1.21386 0.97337 0.93954 0.98098 1.21200 0.99541 0.98523 0.95687 1.21297 0.91435 0.97531 0.96586 1.19546 0.96788 0.98555 0.98301 1.18642 0.80752 0.80068 0.85966 1.90868 1.78406 1.33509 1.34633 0.92680 0.94865 0.94969 0.86564 0.85144 0.74795 0.88182 0.89606 0.89112 0.87769 0.85169 0.85441 0.85076 0.84155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.16 13.29 55.43 0.74 -26.43 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.51 -14.88 9.11 -34.44 -0.31 -15.19 16 8 H 0.06 1.78 7.74 -52.48 -0.41 1.38 16 9 C 0.03 0.75 4.98 -27.89 -0.14 0.61 16 10 C -0.57 -12.31 4.50 37.16 0.17 -12.14 16 11 S 2.58 49.49 5.62 -107.50 -0.60 48.89 16 12 O -0.95 -20.41 18.08 -57.54 -1.04 -21.45 16 13 O -0.96 -19.99 18.09 -57.54 -1.04 -21.03 16 14 N -0.91 -13.31 5.79 60.35 0.35 -12.96 16 15 N -0.40 -5.39 3.41 -61.72 -0.21 -5.60 16 16 C 0.11 1.12 6.67 -4.42 -0.03 1.09 16 17 C -0.10 -0.68 6.04 -28.11 -0.17 -0.85 16 18 C -0.05 -0.44 5.69 -104.31 -0.59 -1.04 16 19 C -0.13 -0.91 9.72 -39.67 -0.39 -1.29 16 20 C -0.09 -0.64 10.04 -39.46 -0.40 -1.04 16 21 C -0.13 -1.12 10.04 -39.59 -0.40 -1.52 16 22 C -0.05 -0.56 9.63 -39.24 -0.38 -0.94 16 23 C -0.13 -1.54 5.80 -105.06 -0.61 -2.15 16 24 C 0.56 8.29 7.03 -12.38 -0.09 8.20 16 25 O -0.50 -9.02 14.50 5.32 0.08 -8.94 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.12 2.45 7.27 -51.92 -0.38 2.07 16 30 H 0.13 2.78 7.72 -51.92 -0.40 2.38 16 31 H 0.41 4.97 8.93 -176.25 -1.57 3.40 16 32 H 0.10 0.83 8.11 -51.93 -0.42 0.41 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.10 0.42 8.08 -51.93 -0.42 0.00 16 36 H 0.13 0.58 8.06 -52.48 -0.42 0.15 16 37 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 38 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.14 1.66 7.78 -52.49 -0.41 1.25 16 LS Contribution 345.00 15.07 5.20 5.20 Total: -1.00 -37.51 345.00 -11.08 -48.59 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -6.10 Total: 1.51 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: -3.43 Total: -24.69 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 0.88 Total: -44.98 kcal Atomic # 8 Polarization: -49.42 SS G_CDS: -2.00 Total: -51.43 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 49.49 SS G_CDS: -0.60 Total: 48.89 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -37.51 -11.08 -48.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867707338.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.138 kcal (2) G-P(sol) polarization free energy of solvation -37.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds