Wall clock time and date at job start Fri Apr 10 2020 18:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99872 * 2 1 4 4 H 1.48502 * 109.46942 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47108 * 300.00210 * 3 2 1 6 6 H 1.48498 * 109.47060 * 60.00454 * 3 2 1 7 7 C 1.37877 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99911 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47272 * 179.97438 * 9 7 2 11 11 S 1.81399 * 109.47201 * 179.97438 * 10 9 7 12 12 O 1.42094 * 110.54154 * 68.37847 * 11 10 9 13 13 O 1.42099 * 110.54575 * 291.62292 * 11 10 9 14 14 N 1.65602 * 104.44660 * 180.02562 * 11 10 9 15 15 N 1.40095 * 120.00181 * 60.00273 * 14 11 10 16 16 C 1.46126 * 119.48929 * 89.99954 * 15 14 11 17 17 C 1.52650 * 110.98210 * 139.71190 * 16 15 14 18 18 C 1.50603 * 110.12860 * 50.53570 * 17 16 15 19 19 C 1.37837 * 120.68129 * 147.43892 * 18 17 16 20 20 C 1.38409 * 119.96947 * 179.17821 * 19 18 17 21 21 C 1.38385 * 120.41566 * 359.77128 * 20 19 18 22 22 C 1.38058 * 120.16813 * 0.26684 * 21 20 19 23 23 C 1.39324 * 119.60903 * 0.12019 * 22 21 20 24 24 C 1.34674 * 119.48919 * 270.01902 * 15 14 11 25 25 O 1.21557 * 120.34729 * 7.91265 * 24 15 14 26 26 H 0.97008 * 119.99790 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47152 * 59.99564 * 9 7 2 28 28 H 1.09003 * 109.47136 * 299.99824 * 9 7 2 29 29 H 1.09001 * 109.47158 * 59.99850 * 10 9 7 30 30 H 1.09003 * 109.47127 * 300.00112 * 10 9 7 31 31 H 0.97006 * 120.00025 * 240.00536 * 14 11 10 32 32 H 1.09003 * 109.17848 * 19.32147 * 16 15 14 33 33 H 1.09003 * 109.17642 * 260.09829 * 16 15 14 34 34 H 1.09000 * 109.35716 * 290.33768 * 17 16 15 35 35 H 1.09001 * 109.25623 * 170.67130 * 17 16 15 36 36 H 1.08003 * 120.01265 * 359.20653 * 19 18 17 37 37 H 1.07997 * 119.79753 * 179.74865 * 20 19 18 38 38 H 1.07997 * 119.91513 * 179.97438 * 21 20 19 39 39 H 1.08002 * 120.19761 * 180.10275 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 16 1.3382 -5.2330 -0.0034 12 8 0.6639 -5.4189 -1.2402 13 8 0.6647 -5.4205 1.2337 14 7 2.5205 -6.3926 -0.0038 15 7 3.4453 -6.4505 1.0470 16 6 3.1487 -7.2669 2.2221 17 6 4.3955 -8.0037 2.7046 18 6 5.5430 -7.0394 2.8514 19 6 6.4995 -7.2275 3.8259 20 6 7.5572 -6.3417 3.9367 21 6 7.6650 -5.2675 3.0709 22 6 6.7130 -5.0677 2.0912 23 6 5.6423 -5.9524 1.9812 24 6 4.5937 -5.7526 0.9586 25 8 4.7664 -4.9673 0.0471 26 1 -0.4850 0.8401 0.0004 27 1 0.6247 -2.5562 -0.8919 28 1 0.6240 -2.5575 0.8880 29 1 2.8719 -3.6051 0.8873 30 1 2.8719 -3.6035 -0.8927 31 1 2.5727 -7.0318 -0.7316 32 1 2.3787 -7.9951 1.9671 33 1 2.7811 -6.6235 3.0215 34 1 4.6618 -8.7749 1.9819 35 1 4.1881 -8.4680 3.6687 36 1 6.4239 -8.0661 4.5023 37 1 8.3029 -6.4894 4.7038 38 1 8.4934 -4.5810 3.1649 39 1 6.7976 -4.2304 1.4142 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867707338.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:21 Heat of formation + Delta-G solvation = -79.624318 kcal Electronic energy + Delta-G solvation = -25552.672617 eV Core-core repulsion = 21780.193369 eV Total energy + Delta-G solvation = -3772.479249 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.86368 -39.46734 -38.39442 -37.77657 -37.24532 -35.96614 -34.95764 -33.20437 -32.39577 -31.06776 -29.88300 -27.67076 -25.14224 -24.78635 -23.70301 -22.64198 -21.20384 -20.24120 -19.38729 -19.00329 -18.74483 -18.42341 -17.17191 -16.96345 -16.78048 -16.56984 -16.35304 -16.04042 -15.59787 -15.31220 -15.02291 -14.68896 -14.53698 -14.20270 -13.81214 -13.75279 -13.55947 -13.45506 -13.35832 -13.28910 -12.99888 -12.88444 -12.74390 -12.46130 -12.34255 -12.19545 -11.95340 -11.90787 -11.66816 -11.17948 -10.88767 -10.69369 -10.31131 -9.93705 -9.66927 -8.30737 -6.44507 -1.00250 -0.22549 0.40008 0.73010 1.35920 1.37344 1.51303 1.62051 2.09687 2.34473 2.54718 2.83122 3.01800 3.10706 3.37098 3.62059 3.73176 3.93031 4.00392 4.03177 4.14811 4.25254 4.42771 4.47018 4.61243 4.63314 4.67218 4.88683 4.95526 5.02900 5.12529 5.18778 5.20265 5.35322 5.43889 5.51764 5.63301 5.81496 5.97080 5.98461 6.02529 6.66881 6.90927 7.25077 8.81871 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.012398 B = 0.004416 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.972100 B = 6339.429293 C = 8039.388718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.001 3.999 3 Si 0.974 3.026 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.025 3.975 10 C -0.571 4.571 11 S 2.623 3.377 12 O -0.976 6.976 13 O -0.972 6.972 14 N -0.897 5.897 15 N -0.398 5.398 16 C 0.098 3.902 17 C -0.090 4.090 18 C -0.049 4.049 19 C -0.119 4.119 20 C -0.080 4.080 21 C -0.137 4.137 22 C -0.076 4.076 23 C -0.159 4.159 24 C 0.548 3.452 25 O -0.549 6.549 26 H 0.270 0.730 27 H 0.011 0.989 28 H 0.012 0.988 29 H 0.117 0.883 30 H 0.129 0.871 31 H 0.431 0.569 32 H 0.119 0.881 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.145 0.855 36 H 0.170 0.830 37 H 0.163 0.837 38 H 0.148 0.852 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.313 -20.876 11.118 28.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.579 4.579 8 H 0.081 0.919 9 C -0.014 4.014 10 C -0.704 4.704 11 S 2.718 3.282 12 O -0.965 6.965 13 O -0.961 6.961 14 N -0.747 5.747 15 N -0.227 5.227 16 C -0.023 4.023 17 C -0.127 4.127 18 C -0.050 4.050 19 C -0.137 4.137 20 C -0.098 4.098 21 C -0.155 4.155 22 C -0.095 4.095 23 C -0.163 4.163 24 C 0.338 3.662 25 O -0.426 6.426 26 H 0.079 0.921 27 H 0.030 0.970 28 H 0.031 0.969 29 H 0.135 0.865 30 H 0.147 0.853 31 H 0.273 0.727 32 H 0.137 0.863 33 H 0.097 0.903 34 H 0.125 0.875 35 H 0.163 0.837 36 H 0.188 0.812 37 H 0.180 0.820 38 H 0.166 0.834 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 15.239 -20.468 10.732 27.683 hybrid contribution 0.479 1.342 -0.992 1.736 sum 15.718 -19.126 9.741 26.603 Atomic orbital electron populations 1.70090 1.07829 1.28403 1.50621 1.26068 0.95937 1.03635 0.94109 0.85266 0.78788 0.77947 0.78270 1.18773 1.19829 1.19619 1.21427 0.93501 0.91028 1.51990 0.91888 1.18844 0.93241 0.92712 0.96628 1.30232 1.12074 1.17008 1.11037 1.04911 0.73895 0.75975 0.73426 1.93550 1.71537 1.85352 1.46015 1.93507 1.71786 1.84704 1.46118 1.55350 1.42236 1.49383 1.27697 1.46950 1.13493 1.49770 1.12507 1.22232 1.00249 0.95320 0.84496 1.21024 0.89424 0.96326 1.05974 1.20326 0.97300 0.93915 0.93477 1.21393 0.93389 1.01010 0.97893 1.21856 0.97746 0.92547 0.97637 1.21447 0.99238 0.99649 0.95122 1.21310 0.92818 0.97555 0.97789 1.19540 0.96581 1.00912 0.99308 1.19340 0.81489 0.79266 0.86060 1.90830 1.79513 1.35641 1.36604 0.92148 0.97041 0.96935 0.86452 0.85290 0.72724 0.86295 0.90280 0.87480 0.83711 0.81238 0.81981 0.83392 0.86525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.18 13.29 21.45 0.28 -57.90 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.97 45.70 29.54 68.60 2.03 47.73 16 4 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.54 -32.63 9.11 25.60 0.23 -32.40 16 8 H 0.06 3.70 7.74 -2.91 -0.02 3.67 16 9 C 0.02 1.41 4.98 29.85 0.15 1.56 16 10 C -0.57 -26.31 4.50 71.98 0.32 -25.99 16 11 S 2.62 103.23 5.62 -56.49 -0.32 102.91 16 12 O -0.98 -42.66 18.08 -127.65 -2.31 -44.97 16 13 O -0.97 -40.98 18.09 -127.65 -2.31 -43.29 16 14 N -0.90 -26.26 5.79 37.02 0.21 -26.05 16 15 N -0.40 -10.63 3.41 -467.51 -1.59 -12.22 16 16 C 0.10 1.74 6.67 86.33 0.58 2.31 16 17 C -0.09 -0.88 6.04 29.70 0.18 -0.70 16 18 C -0.05 -0.76 5.69 -19.66 -0.11 -0.87 16 19 C -0.12 -1.17 9.72 22.22 0.22 -0.95 16 20 C -0.08 -0.83 10.04 22.35 0.22 -0.61 16 21 C -0.14 -2.13 10.04 22.26 0.22 -1.91 16 22 C -0.08 -1.76 9.63 22.49 0.22 -1.55 16 23 C -0.16 -3.82 5.80 -20.15 -0.12 -3.94 16 24 C 0.55 16.82 7.03 86.80 0.61 17.43 16 25 O -0.55 -21.10 14.50 -3.90 -0.06 -21.15 16 26 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 27 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.12 5.28 7.27 -2.39 -0.02 5.26 16 30 H 0.13 5.89 7.72 -2.39 -0.02 5.87 16 31 H 0.43 10.12 8.93 -217.35 -1.94 8.18 16 32 H 0.12 1.65 8.11 -2.39 -0.02 1.63 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.15 0.32 8.08 -2.39 -0.02 0.30 16 36 H 0.17 0.36 8.06 -2.91 -0.02 0.34 16 37 H 0.16 0.59 8.06 -2.91 -0.02 0.57 16 38 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 39 H 0.12 3.12 7.78 -2.91 -0.02 3.09 16 Total: -1.00 -85.58 345.00 -1.73 -87.31 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -0.86 Total: 14.71 kcal Atomic # 6 Polarization: -50.26 SS G_CDS: 3.18 Total: -47.08 kcal Atomic # 7 Polarization: -95.07 SS G_CDS: -1.09 Total: -96.17 kcal Atomic # 8 Polarization: -104.74 SS G_CDS: -4.67 Total: -109.41 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Atomic # 16 Polarization: 103.23 SS G_CDS: -0.32 Total: 102.91 kcal Total: -85.58 -1.73 -87.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867707338.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.689 kcal (2) G-P(sol) polarization free energy of solvation -85.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds