Wall clock time and date at job start Fri Apr 10 2020 18:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00047 * 2 1 4 4 H 1.48502 * 109.46701 * 269.99749 * 3 2 1 5 5 H 1.48496 * 109.47127 * 29.99843 * 3 2 1 6 6 H 1.48501 * 109.47189 * 150.00113 * 3 2 1 7 7 C 1.37878 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99793 * 0.02562 * 7 2 1 9 9 C 1.50707 * 120.00149 * 179.97438 * 7 2 1 10 10 C 1.50696 * 109.46945 * 179.97438 * 9 7 2 11 11 C 1.38241 * 119.99831 * 90.00179 * 10 9 7 12 12 C 1.38235 * 120.00202 * 179.97438 * 11 10 9 13 13 C 1.38240 * 119.99723 * 359.97438 * 12 11 10 14 14 S 1.76196 * 119.99884 * 180.02562 * 13 12 11 15 15 O 1.42100 * 106.40260 * 336.45786 * 14 13 12 16 16 O 1.42102 * 106.40449 * 203.54435 * 14 13 12 17 17 N 1.65598 * 107.21864 * 90.00148 * 14 13 12 18 18 C 1.46495 * 120.00088 * 65.00433 * 17 14 13 19 19 H 1.09003 * 110.85259 * 338.78276 * 18 17 14 20 20 C 1.54480 * 110.96648 * 215.00082 * 18 17 14 21 21 N 1.46766 * 105.47089 * 216.42345 * 20 18 17 22 22 C 1.34413 * 111.30232 * 17.01742 * 21 20 18 23 23 O 1.21284 * 124.94565 * 179.56847 * 22 21 20 24 24 C 1.51284 * 110.11346 * 359.58991 * 22 21 20 25 25 C 1.38231 * 120.00148 * 0.27695 * 13 12 11 26 26 C 1.38232 * 120.00264 * 270.02535 * 10 9 7 27 27 H 0.96995 * 119.99531 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.46825 * 60.00191 * 9 7 2 29 29 H 1.09001 * 109.46893 * 300.00214 * 9 7 2 30 30 H 1.07995 * 119.99814 * 0.02562 * 11 10 9 31 31 H 1.07995 * 120.00162 * 180.02562 * 12 11 10 32 32 H 0.97007 * 119.99654 * 244.99963 * 17 14 13 33 33 H 1.09008 * 110.24751 * 97.42561 * 20 18 17 34 34 H 1.09001 * 110.25034 * 335.42074 * 20 18 17 35 35 H 0.97003 * 124.35016 * 196.75071 * 21 20 18 36 36 H 1.09008 * 110.48406 * 225.06682 * 24 22 21 37 37 H 1.08998 * 110.48546 * 102.43268 * 24 22 21 38 38 H 1.08000 * 120.00466 * 179.72380 * 25 13 12 39 39 H 1.08000 * 120.00386 * 0.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0139 -2.6148 0.0013 11 6 4.2438 -3.2678 -1.1952 12 6 4.7051 -4.5709 -1.1940 13 6 4.9369 -5.2209 0.0038 14 16 5.5254 -6.8817 0.0053 15 8 5.1453 -7.4433 -1.2434 16 8 5.1472 -7.4403 1.2560 17 7 7.1801 -6.8154 0.0040 18 6 7.8914 -6.2490 1.1526 19 1 7.2369 -5.5973 1.7314 20 6 9.1616 -5.4956 0.6995 21 7 10.1627 -5.7540 1.7411 22 6 9.8122 -6.8024 2.5058 23 8 10.4636 -7.2344 3.4332 24 6 8.4872 -7.3654 2.0411 25 6 4.7020 -4.5698 1.2003 26 6 4.2442 -3.2654 1.1991 27 1 -0.4849 0.8400 -0.0004 28 1 3.8752 -0.6797 0.8895 29 1 3.8746 -0.6808 -0.8905 30 1 4.0639 -2.7596 -2.1310 31 1 4.8851 -5.0809 -2.1288 32 1 7.6783 -7.1517 -0.7574 33 1 8.9604 -4.4267 0.6266 34 1 9.5071 -5.8813 -0.2597 35 1 10.9750 -5.2372 1.8599 36 1 7.8367 -7.5629 2.8932 37 1 8.6418 -8.2742 1.4594 38 1 4.8789 -5.0791 2.1361 39 1 4.0639 -2.7556 2.1339 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885102360.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:43 Heat of formation + Delta-G solvation = -86.464179 kcal Electronic energy + Delta-G solvation = -24703.926768 eV Core-core repulsion = 20931.150921 eV Total energy + Delta-G solvation = -3772.775847 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.68613 -39.00394 -37.45168 -37.13905 -35.92858 -34.47344 -33.76081 -31.82161 -30.75728 -30.14910 -28.06558 -27.63840 -23.60331 -22.66694 -22.24054 -20.98294 -20.86039 -19.81958 -18.14562 -17.95609 -17.39047 -16.96928 -16.83507 -15.92006 -15.50540 -15.20118 -14.93248 -14.46063 -14.37228 -14.27525 -13.99524 -13.94055 -13.61827 -13.27780 -12.89851 -12.76832 -12.64611 -12.18729 -12.10495 -12.07938 -11.97463 -11.85546 -11.77641 -11.11405 -11.00543 -10.61620 -10.58508 -10.31386 -10.17422 -9.83893 -9.59908 -9.58708 -8.76980 -8.73612 -8.55501 -6.23651 -4.25757 0.27762 1.13402 1.62134 2.22085 2.70833 2.98718 3.15793 3.24351 3.25016 3.55012 3.82288 3.97648 4.03409 4.19571 4.25565 4.36329 4.47573 4.81357 5.00937 5.02990 5.04341 5.08000 5.11954 5.44479 5.48078 5.55202 5.66920 5.72508 6.05063 6.13408 6.32002 6.33659 6.51585 6.55915 6.60791 6.61860 6.73928 7.18653 7.21479 7.47394 7.83366 8.28685 8.79675 9.34299 10.88825 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.017251 B = 0.003131 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.746952 B = 8940.376011 C = 9883.632796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.073 3.927 3 Si 0.879 3.121 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.075 0.925 9 C 0.005 3.995 10 C 0.033 3.967 11 C -0.143 4.143 12 C -0.019 4.019 13 C -0.703 4.703 14 S 2.696 3.304 15 O -0.959 6.959 16 O -0.956 6.956 17 N -1.109 6.109 18 C 0.144 3.856 19 H 0.115 0.885 20 C 0.095 3.905 21 N -0.731 5.731 22 C 0.523 3.477 23 O -0.531 6.531 24 C -0.174 4.174 25 C -0.027 4.027 26 C -0.142 4.142 27 H 0.267 0.733 28 H 0.034 0.966 29 H 0.030 0.970 30 H 0.130 0.870 31 H 0.132 0.868 32 H 0.420 0.580 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.413 0.587 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.132 0.868 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.404 -10.393 -1.053 22.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.130 4.130 3 Si 0.706 3.294 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.093 0.907 9 C -0.032 4.032 10 C 0.033 3.967 11 C -0.161 4.161 12 C -0.039 4.039 13 C -0.793 4.793 14 S 2.789 3.211 15 O -0.949 6.949 16 O -0.946 6.946 17 N -0.866 5.866 18 C 0.035 3.965 19 H 0.133 0.867 20 C -0.031 4.031 21 N -0.388 5.388 22 C 0.309 3.691 23 O -0.407 6.407 24 C -0.216 4.216 25 C -0.046 4.046 26 C -0.161 4.161 27 H 0.077 0.923 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.148 0.852 31 H 0.150 0.850 32 H 0.255 0.745 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.252 0.748 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.150 0.850 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 18.853 -11.287 -0.420 21.977 hybrid contribution 0.732 1.911 -0.456 2.096 sum 19.585 -9.376 -0.876 21.731 Atomic orbital electron populations 1.69884 1.06291 1.27284 1.49621 1.24989 0.94764 0.99073 0.94173 0.86790 0.80320 0.83560 0.78734 1.20027 1.21035 1.18952 1.20811 0.87619 0.94957 1.52568 0.90651 1.18994 0.97965 0.88140 0.98056 1.20726 0.85966 0.97686 0.92337 1.21243 1.01383 0.94708 0.98812 1.20775 0.93067 0.94229 0.95815 1.30325 1.23697 1.25283 0.99960 1.01728 0.71685 0.74129 0.73569 1.93591 1.80585 1.76808 1.43959 1.93590 1.80877 1.75917 1.44208 1.55722 1.26380 1.77362 1.27137 1.21535 0.94233 0.94205 0.86570 0.86736 1.22398 0.87394 1.01907 0.91445 1.46220 1.25224 1.33912 1.33480 1.20834 0.87341 0.79705 0.81236 1.90779 1.58403 1.62707 1.28837 1.22937 0.95598 1.00323 1.02775 1.20806 0.93682 0.94341 0.95776 1.21235 1.01329 0.94683 0.98807 0.92309 0.94779 0.95216 0.85177 0.84999 0.74542 0.88867 0.89936 0.74818 0.86553 0.86709 0.85025 0.85163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.96 55.43 0.77 -25.49 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 20.03 27.47 -169.99 -4.67 15.36 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16 7 C -0.52 -13.89 9.65 -34.44 -0.33 -14.22 16 8 H 0.08 2.22 7.98 -52.48 -0.42 1.81 16 9 C 0.01 0.12 4.17 -29.03 -0.12 0.00 16 10 C 0.03 0.61 5.07 -104.63 -0.53 0.08 16 11 C -0.14 -2.33 9.70 -39.58 -0.38 -2.72 16 12 C -0.02 -0.27 9.52 -39.58 -0.38 -0.65 16 13 C -0.70 -9.26 5.95 -39.58 -0.24 -9.50 16 14 S 2.70 30.19 5.66 -107.50 -0.61 29.58 16 15 O -0.96 -13.29 17.28 -57.17 -0.99 -14.27 16 16 O -0.96 -13.12 17.04 -57.17 -0.97 -14.09 16 17 N -1.11 -7.26 5.57 -3.51 -0.02 -7.28 16 18 C 0.14 0.89 3.70 -66.31 -0.25 0.65 16 19 H 0.11 0.69 7.51 -51.93 -0.39 0.30 16 20 C 0.10 0.42 7.51 -3.12 -0.02 0.40 16 21 N -0.73 -4.45 6.24 -59.20 -0.37 -4.82 16 22 C 0.52 4.84 8.43 -10.86 -0.09 4.75 16 23 O -0.53 -7.29 18.03 5.55 0.10 -7.19 16 24 C -0.17 -1.27 6.59 -26.75 -0.18 -1.45 16 25 C -0.03 -0.37 9.02 -39.58 -0.36 -0.72 16 26 C -0.14 -2.31 9.70 -39.58 -0.38 -2.70 16 27 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.03 0.72 7.14 -51.93 -0.37 0.35 16 29 H 0.03 0.62 7.52 -51.93 -0.39 0.22 16 30 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 31 H 0.13 1.54 7.62 -52.49 -0.40 1.14 16 32 H 0.42 1.68 8.70 -34.47 -0.30 1.38 16 33 H 0.09 0.33 8.14 -51.92 -0.42 -0.10 16 34 H 0.08 0.23 7.89 -51.93 -0.41 -0.18 16 35 H 0.41 1.96 8.96 -40.82 -0.37 1.60 16 36 H 0.12 0.90 8.14 -51.92 -0.42 0.48 16 37 H 0.11 0.71 8.08 -51.93 -0.42 0.29 16 38 H 0.13 1.50 7.61 -52.49 -0.40 1.10 16 39 H 0.13 2.01 8.06 -52.49 -0.42 1.58 16 LS Contribution 346.22 15.07 5.22 5.22 Total: -1.00 -36.18 346.22 -9.62 -45.79 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -4.72 Total: 1.38 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: -3.36 Total: -24.19 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.38 Total: -37.59 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -1.86 Total: -35.56 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.67 Total: 15.36 kcal Atomic # 16 Polarization: 30.19 SS G_CDS: -0.61 Total: 29.58 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.18 -9.62 -45.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885102360.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.670 kcal (2) G-P(sol) polarization free energy of solvation -36.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds