Wall clock time and date at job start Fri Apr 10 2020 18:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00047 * 2 1 4 4 H 1.48502 * 109.46701 * 269.99749 * 3 2 1 5 5 H 1.48496 * 109.47127 * 29.99843 * 3 2 1 6 6 H 1.48501 * 109.47189 * 150.00113 * 3 2 1 7 7 C 1.37878 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99793 * 0.02562 * 7 2 1 9 9 C 1.50707 * 120.00149 * 179.97438 * 7 2 1 10 10 C 1.50696 * 109.46945 * 179.97438 * 9 7 2 11 11 C 1.38241 * 119.99831 * 90.00179 * 10 9 7 12 12 C 1.38235 * 120.00202 * 179.97438 * 11 10 9 13 13 C 1.38240 * 119.99723 * 359.97438 * 12 11 10 14 14 S 1.76196 * 119.99884 * 180.02562 * 13 12 11 15 15 O 1.42100 * 106.40260 * 336.45786 * 14 13 12 16 16 O 1.42102 * 106.40449 * 203.54435 * 14 13 12 17 17 N 1.65598 * 107.21864 * 90.00148 * 14 13 12 18 18 C 1.46495 * 120.00088 * 65.00433 * 17 14 13 19 19 H 1.09003 * 110.85259 * 338.78276 * 18 17 14 20 20 C 1.54480 * 110.96648 * 215.00082 * 18 17 14 21 21 N 1.46766 * 105.47089 * 216.42345 * 20 18 17 22 22 C 1.34413 * 111.30232 * 17.01742 * 21 20 18 23 23 O 1.21284 * 124.94565 * 179.56847 * 22 21 20 24 24 C 1.51284 * 110.11346 * 359.58991 * 22 21 20 25 25 C 1.38231 * 120.00148 * 0.27695 * 13 12 11 26 26 C 1.38232 * 120.00264 * 270.02535 * 10 9 7 27 27 H 0.96995 * 119.99531 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.46825 * 60.00191 * 9 7 2 29 29 H 1.09001 * 109.46893 * 300.00214 * 9 7 2 30 30 H 1.07995 * 119.99814 * 0.02562 * 11 10 9 31 31 H 1.07995 * 120.00162 * 180.02562 * 12 11 10 32 32 H 0.97007 * 119.99654 * 244.99963 * 17 14 13 33 33 H 1.09008 * 110.24751 * 97.42561 * 20 18 17 34 34 H 1.09001 * 110.25034 * 335.42074 * 20 18 17 35 35 H 0.97003 * 124.35016 * 196.75071 * 21 20 18 36 36 H 1.09008 * 110.48406 * 225.06682 * 24 22 21 37 37 H 1.08998 * 110.48546 * 102.43268 * 24 22 21 38 38 H 1.08000 * 120.00466 * 179.72380 * 25 13 12 39 39 H 1.08000 * 120.00386 * 0.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0139 -2.6148 0.0013 11 6 4.2438 -3.2678 -1.1952 12 6 4.7051 -4.5709 -1.1940 13 6 4.9369 -5.2209 0.0038 14 16 5.5254 -6.8817 0.0053 15 8 5.1453 -7.4433 -1.2434 16 8 5.1472 -7.4403 1.2560 17 7 7.1801 -6.8154 0.0040 18 6 7.8914 -6.2490 1.1526 19 1 7.2369 -5.5973 1.7314 20 6 9.1616 -5.4956 0.6995 21 7 10.1627 -5.7540 1.7411 22 6 9.8122 -6.8024 2.5058 23 8 10.4636 -7.2344 3.4332 24 6 8.4872 -7.3654 2.0411 25 6 4.7020 -4.5698 1.2003 26 6 4.2442 -3.2654 1.1991 27 1 -0.4849 0.8400 -0.0004 28 1 3.8752 -0.6797 0.8895 29 1 3.8746 -0.6808 -0.8905 30 1 4.0639 -2.7596 -2.1310 31 1 4.8851 -5.0809 -2.1288 32 1 7.6783 -7.1517 -0.7574 33 1 8.9604 -4.4267 0.6266 34 1 9.5071 -5.8813 -0.2597 35 1 10.9750 -5.2372 1.8599 36 1 7.8367 -7.5629 2.8932 37 1 8.6418 -8.2742 1.4594 38 1 4.8789 -5.0791 2.1361 39 1 4.0639 -2.7556 2.1339 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885102360.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:42 Heat of formation + Delta-G solvation = -116.233767 kcal Electronic energy + Delta-G solvation = -24705.217674 eV Core-core repulsion = 20931.150921 eV Total energy + Delta-G solvation = -3774.066754 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.30054 -40.22191 -38.38403 -37.93855 -36.95270 -35.52966 -35.09530 -33.52994 -31.93160 -30.73329 -29.69256 -28.15084 -25.26545 -23.76422 -22.85290 -22.29205 -21.58743 -20.69101 -19.07730 -19.01937 -18.67019 -18.27062 -17.48711 -16.75931 -16.72832 -16.32454 -15.96390 -15.85393 -15.38445 -15.25408 -14.87664 -14.64695 -14.58838 -14.42132 -14.15684 -14.06543 -13.60963 -13.44672 -13.32038 -13.20100 -13.12942 -12.87243 -12.54659 -12.49261 -12.35177 -12.04791 -11.90570 -11.70964 -11.54418 -11.27725 -10.82055 -10.52351 -10.11818 -9.92272 -9.90900 -8.32947 -6.40193 -0.65305 -0.05295 0.43070 1.36922 1.38887 1.49961 1.53732 1.92517 2.33206 2.44276 2.56480 2.81319 3.01863 3.29692 3.35114 3.49825 3.82856 3.91081 3.94618 4.02760 4.11724 4.25718 4.50251 4.51161 4.62612 4.72597 4.82313 4.88927 4.91830 5.02239 5.08136 5.12875 5.20938 5.32973 5.50950 5.81839 5.82403 5.97138 6.00132 6.07340 6.19870 6.67076 7.22122 7.24006 8.83529 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.017251 B = 0.003131 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.746952 B = 8940.376011 C = 9883.632796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.008 3.992 3 Si 0.953 3.047 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.240 1.240 7 C -0.526 4.526 8 H 0.026 0.974 9 C 0.011 3.989 10 C -0.002 4.002 11 C -0.154 4.154 12 C -0.017 4.017 13 C -0.698 4.698 14 S 2.726 3.274 15 O -0.982 6.982 16 O -0.978 6.978 17 N -1.086 6.086 18 C 0.139 3.861 19 H 0.119 0.881 20 C 0.096 3.904 21 N -0.719 5.719 22 C 0.518 3.482 23 O -0.586 6.586 24 C -0.174 4.174 25 C -0.023 4.023 26 C -0.154 4.154 27 H 0.268 0.732 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.133 0.867 31 H 0.158 0.842 32 H 0.436 0.564 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.420 0.580 36 H 0.110 0.890 37 H 0.128 0.872 38 H 0.157 0.843 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.047 -10.398 -1.884 24.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.189 4.189 3 Si 0.776 3.224 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.163 1.163 7 C -0.564 4.564 8 H 0.045 0.955 9 C -0.027 4.027 10 C -0.002 4.002 11 C -0.173 4.173 12 C -0.036 4.036 13 C -0.785 4.785 14 S 2.816 3.184 15 O -0.972 6.972 16 O -0.968 6.968 17 N -0.848 5.848 18 C 0.030 3.970 19 H 0.137 0.863 20 C -0.029 4.029 21 N -0.374 5.374 22 C 0.304 3.696 23 O -0.466 6.466 24 C -0.216 4.216 25 C -0.042 4.042 26 C -0.173 4.173 27 H 0.077 0.923 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.151 0.849 31 H 0.175 0.825 32 H 0.275 0.725 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.260 0.740 36 H 0.128 0.872 37 H 0.146 0.854 38 H 0.175 0.825 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 21.507 -11.262 -1.300 24.312 hybrid contribution -0.071 1.738 -0.219 1.753 sum 21.436 -9.524 -1.520 23.506 Atomic orbital electron populations 1.70059 1.08515 1.28448 1.51826 1.26019 0.95584 1.03577 0.93749 0.85619 0.79605 0.77781 0.79434 1.18886 1.21210 1.16303 1.21093 0.90673 0.93061 1.51552 0.95518 1.18832 0.94319 0.90929 0.98580 1.20571 0.88852 0.96704 0.94060 1.21360 1.01817 0.95877 0.98263 1.21045 0.91979 0.93306 0.97291 1.30768 1.22194 1.26077 0.99451 1.00820 0.72412 0.72758 0.72397 1.93563 1.81784 1.76886 1.44936 1.93571 1.82065 1.75907 1.45247 1.55213 1.24523 1.77100 1.27984 1.21681 0.95126 0.94031 0.86169 0.86300 1.22583 0.85829 1.02856 0.91661 1.46234 1.25598 1.32653 1.32922 1.21134 0.87622 0.80070 0.80736 1.90751 1.60039 1.64532 1.31311 1.22950 0.94518 1.01209 1.02953 1.21071 0.92515 0.93384 0.97248 1.21346 1.01810 0.95876 0.98234 0.92265 0.94121 0.94203 0.84949 0.82460 0.72526 0.87057 0.87369 0.73979 0.87202 0.85426 0.82505 0.85036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.85 13.96 21.45 0.30 -57.55 16 2 C 0.01 0.46 5.47 84.66 0.46 0.92 16 3 Si 0.95 41.20 27.47 68.60 1.88 43.09 16 4 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 5 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.24 -9.31 6.54 99.48 0.65 -8.66 16 7 C -0.53 -28.88 9.65 25.60 0.25 -28.63 16 8 H 0.03 1.66 7.98 -2.91 -0.02 1.64 16 9 C 0.01 0.45 4.17 29.10 0.12 0.57 16 10 C 0.00 -0.06 5.07 -19.87 -0.10 -0.16 16 11 C -0.15 -4.92 9.70 22.27 0.22 -4.70 16 12 C -0.02 -0.44 9.52 22.27 0.21 -0.23 16 13 C -0.70 -16.65 5.95 22.27 0.13 -16.52 16 14 S 2.73 53.14 5.66 -56.49 -0.32 52.82 16 15 O -0.98 -24.44 17.28 -128.00 -2.21 -26.65 16 16 O -0.98 -24.43 17.04 -128.00 -2.18 -26.61 16 17 N -1.09 -10.15 5.57 -165.02 -0.92 -11.07 16 18 C 0.14 1.24 3.70 46.05 0.17 1.41 16 19 H 0.12 1.03 7.51 -2.39 -0.02 1.01 16 20 C 0.10 0.46 7.51 86.83 0.65 1.11 16 21 N -0.72 -6.83 6.24 -459.79 -2.87 -9.70 16 22 C 0.52 8.82 8.43 87.90 0.74 9.57 16 23 O -0.59 -16.04 18.03 -3.04 -0.05 -16.09 16 24 C -0.17 -2.16 6.59 30.58 0.20 -1.96 16 25 C -0.02 -0.59 9.02 22.27 0.20 -0.39 16 26 C -0.15 -4.90 9.70 22.27 0.22 -4.69 16 27 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 28 H 0.04 1.66 7.14 -2.39 -0.02 1.65 16 29 H 0.04 1.60 7.52 -2.39 -0.02 1.59 16 30 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 31 H 0.16 3.20 7.62 -2.91 -0.02 3.18 16 32 H 0.44 1.59 8.70 -96.74 -0.84 0.75 16 33 H 0.11 0.26 8.14 -2.38 -0.02 0.24 16 34 H 0.11 0.06 7.89 -2.39 -0.02 0.04 16 35 H 0.42 2.98 8.96 -92.71 -0.83 2.15 16 36 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.13 1.23 8.08 -2.39 -0.02 1.21 16 38 H 0.16 3.17 7.61 -2.91 -0.02 3.15 16 39 H 0.13 4.02 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -81.88 346.22 -3.52 -85.40 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -0.62 Total: 10.04 kcal Atomic # 6 Polarization: -47.17 SS G_CDS: 3.47 Total: -43.69 kcal Atomic # 7 Polarization: -74.82 SS G_CDS: -3.49 Total: -78.31 kcal Atomic # 8 Polarization: -64.90 SS G_CDS: -4.45 Total: -69.35 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 1.88 Total: 43.09 kcal Atomic # 16 Polarization: 53.14 SS G_CDS: -0.32 Total: 52.82 kcal Total: -81.88 -3.52 -85.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885102360.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.832 kcal (2) G-P(sol) polarization free energy of solvation -81.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds