Wall clock time and date at job start Fri Apr 10 2020 18:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86792 * 120.00089 * 2 1 4 4 H 1.48500 * 109.47473 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47190 * 300.00456 * 3 2 1 6 6 H 1.48505 * 109.47285 * 60.00087 * 3 2 1 7 7 C 1.38896 * 119.99681 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99297 * 186.80358 * 7 2 1 9 9 N 1.37211 * 120.00243 * 6.80242 * 7 2 1 10 10 C 1.34782 * 119.99443 * 231.24773 * 9 7 2 11 11 O 1.21276 * 119.99431 * 184.91610 * 10 9 7 12 12 C 1.50693 * 120.00354 * 4.91196 * 10 9 7 13 13 H 1.09003 * 109.54992 * 324.39937 * 12 10 9 14 14 C 1.53037 * 109.54861 * 84.69025 * 12 10 9 15 15 C 1.52588 * 109.98540 * 183.50345 * 14 12 10 16 16 C 1.52590 * 110.64144 * 290.01226 * 15 14 12 17 17 C 1.53043 * 109.98716 * 69.99099 * 16 15 14 18 18 S 1.81670 * 109.54966 * 204.20869 * 12 10 9 19 19 O 1.42103 * 108.66129 * 300.17652 * 18 12 10 20 20 O 1.42095 * 108.66376 * 71.51774 * 18 12 10 21 21 C 1.39419 * 120.00150 * 51.24113 * 9 7 2 22 22 C 1.39067 * 119.69979 * 5.29922 * 21 9 7 23 23 C 1.38376 * 119.09975 * 180.27209 * 22 21 9 24 24 C 1.38825 * 118.49157 * 359.44185 * 23 22 21 25 25 C 1.38140 * 119.31456 * 0.26972 * 24 23 22 26 26 N 1.31885 * 120.84851 * 0.03018 * 25 24 23 27 27 H 0.96998 * 119.99872 * 354.99299 * 1 2 3 28 28 H 1.08997 * 109.38792 * 303.66175 * 14 12 10 29 29 H 1.09000 * 109.38346 * 63.35000 * 14 12 10 30 30 H 1.08999 * 109.24236 * 169.71375 * 15 14 12 31 31 H 1.09000 * 109.21246 * 50.29174 * 15 14 12 32 32 H 1.08992 * 109.38995 * 309.83036 * 16 15 14 33 33 H 1.09010 * 109.38560 * 190.14213 * 16 15 14 34 34 H 1.08990 * 109.55057 * 176.49544 * 17 16 15 35 35 H 1.09001 * 109.55097 * 56.20008 * 17 16 15 36 36 H 1.08004 * 120.44625 * 0.02562 * 22 21 9 37 37 H 1.08002 * 120.75116 * 179.71171 * 23 22 21 38 38 H 1.08000 * 120.34249 * 180.30023 * 24 23 22 39 39 H 1.08001 * 119.57814 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3464 0.0006 5 1 1.8894 2.3964 -1.2124 6 1 1.8895 2.3964 1.2125 7 6 2.0086 -1.2029 -0.0005 8 1 3.0829 -1.2062 0.1103 9 7 1.3298 -2.3869 -0.1418 10 6 1.5336 -3.3893 0.7358 11 8 1.0025 -4.4655 0.5611 12 6 2.4214 -3.1729 1.9341 13 1 3.2475 -2.5158 1.6621 14 6 1.6095 -2.5370 3.0648 15 6 2.5181 -2.2336 4.2525 16 6 2.9681 -3.5251 4.9292 17 6 3.9426 -4.2792 4.0216 18 16 3.0763 -4.7696 2.5018 19 8 1.9851 -5.6101 2.8514 20 8 4.0357 -5.2285 1.5595 21 6 0.4292 -2.5530 -1.1930 22 6 0.3049 -1.5588 -2.1574 23 6 -0.5969 -1.7341 -3.1923 24 6 -1.3377 -2.9074 -3.2335 25 6 -1.1584 -3.8556 -2.2451 26 7 -0.2956 -3.6584 -1.2673 27 1 -0.4850 0.8368 0.0733 28 1 1.1576 -1.6110 2.7092 29 1 0.8236 -3.2247 3.3769 30 1 1.9757 -1.6209 4.9725 31 1 3.3941 -1.6869 3.9035 32 1 2.0987 -4.1520 5.1266 33 1 3.4619 -3.2868 5.8714 34 1 4.3072 -5.1679 4.5365 35 1 4.7823 -3.6315 3.7699 36 1 0.9012 -0.6603 -2.0972 37 1 -0.7184 -0.9771 -3.9530 38 1 -2.0465 -3.0774 -4.0305 39 1 -1.7322 -4.7701 -2.2733 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892469200.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:49 Heat of formation + Delta-G solvation = -47.963492 kcal Electronic energy + Delta-G solvation = -26719.216770 eV Core-core repulsion = 22948.110438 eV Total energy + Delta-G solvation = -3771.106332 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.93838 -38.22957 -36.93987 -36.20746 -35.57823 -35.22425 -32.23311 -31.81567 -31.05485 -29.26630 -27.65689 -25.42566 -23.97775 -22.63466 -21.99893 -20.83095 -19.71157 -18.63180 -18.02400 -16.88695 -16.24724 -15.83913 -15.73569 -15.28555 -15.14350 -14.81506 -14.68604 -14.46323 -13.98311 -13.68971 -13.49967 -13.44941 -12.91577 -12.85942 -12.31968 -12.12468 -11.92830 -11.69507 -11.61416 -11.57583 -11.55507 -11.36237 -11.22696 -11.12544 -10.87480 -10.77241 -10.55029 -10.31860 -9.76846 -9.49986 -9.19259 -9.01333 -8.74052 -8.03724 -7.11704 -6.56382 -4.65646 0.29916 2.15676 2.39733 2.90259 3.01455 3.04129 3.04523 3.51425 3.74867 3.91752 4.19710 4.34420 4.55739 4.63463 4.78594 4.95887 4.98856 5.14543 5.18835 5.30557 5.47708 5.59577 5.64797 5.68234 5.74349 5.84973 5.93108 6.01402 6.10224 6.29737 6.31805 6.35322 6.56658 6.79456 7.01954 7.09529 7.20299 7.47301 7.82917 8.03976 8.67569 8.77633 9.13848 9.62246 10.33067 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.013096 B = 0.006292 C = 0.004695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.525261 B = 4448.740814 C = 5961.914117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.055 3.945 3 Si 0.917 3.083 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.365 4.365 8 H 0.099 0.901 9 N -0.373 5.373 10 C 0.517 3.483 11 O -0.507 6.507 12 C -0.569 4.569 13 H 0.156 0.844 14 C -0.093 4.093 15 C -0.137 4.137 16 C -0.110 4.110 17 C -0.614 4.614 18 S 2.433 3.567 19 O -0.915 6.915 20 O -0.944 6.944 21 C 0.385 3.615 22 C -0.140 4.140 23 C -0.079 4.079 24 C -0.232 4.232 25 C 0.108 3.892 26 N -0.493 5.493 27 H 0.277 0.723 28 H 0.105 0.895 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.137 0.863 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.751 1.402 5.720 7.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.155 4.155 3 Si 0.742 3.258 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.492 4.492 8 H 0.117 0.883 9 N -0.085 5.085 10 C 0.303 3.697 11 O -0.382 6.382 12 C -0.681 4.681 13 H 0.173 0.827 14 C -0.132 4.132 15 C -0.174 4.174 16 C -0.148 4.148 17 C -0.742 4.742 18 S 2.612 3.388 19 O -0.912 6.912 20 O -0.941 6.941 21 C 0.155 3.845 22 C -0.164 4.164 23 C -0.105 4.105 24 C -0.254 4.254 25 C -0.051 4.051 26 N -0.209 5.209 27 H 0.088 0.912 28 H 0.123 0.877 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.154 0.846 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.405 -0.499 5.939 7.411 hybrid contribution 0.369 2.650 -0.313 2.694 sum 4.774 2.151 5.627 7.686 Atomic orbital electron populations 1.69968 1.06120 1.28775 1.42351 1.25618 0.95421 1.00130 0.94359 0.86010 0.80097 0.81149 0.78563 1.18688 1.20027 1.20108 1.19418 0.92109 0.81533 1.56168 0.88321 1.40895 1.35254 1.13247 1.19099 1.19505 0.82426 0.85423 0.82375 1.90842 1.48861 1.24690 1.73826 1.30309 1.10177 1.22998 1.04584 0.82650 1.21157 0.97295 1.04038 0.90668 1.21710 1.00697 0.97270 0.97719 1.21307 0.98161 0.96708 0.98620 1.30377 1.12222 1.11011 1.20628 1.07889 0.76179 0.77635 0.77084 1.93558 1.52380 1.62007 1.83257 1.93545 1.62386 1.78396 1.59731 1.18744 0.89874 0.89101 0.86817 1.21481 1.00980 1.00193 0.93771 1.21162 0.95402 0.96576 0.97399 1.21676 1.04585 0.96903 1.02279 1.22298 0.94554 0.98102 0.90107 1.67581 1.07278 1.21588 1.24428 0.91249 0.87663 0.90120 0.89760 0.90521 0.89787 0.89928 0.85211 0.85057 0.84569 0.86540 0.86727 0.84258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.27 11.23 55.49 0.62 -19.65 16 2 C 0.06 1.23 3.64 -17.48 -0.06 1.16 16 3 Si 0.92 17.09 29.56 -169.99 -5.02 12.06 16 4 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 5 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.28 -5.13 7.11 56.52 0.40 -4.73 16 7 C -0.36 -8.38 7.34 -14.90 -0.11 -8.49 16 8 H 0.10 2.10 7.09 -52.49 -0.37 1.73 16 9 N -0.37 -9.34 2.67 -60.71 -0.16 -9.50 16 10 C 0.52 12.60 6.72 -10.99 -0.07 12.52 16 11 O -0.51 -13.89 13.76 -9.58 -0.13 -14.02 16 12 C -0.57 -10.55 2.16 -27.87 -0.06 -10.61 16 13 H 0.16 2.50 6.69 -51.93 -0.35 2.15 16 14 C -0.09 -1.50 5.00 -26.92 -0.13 -1.63 16 15 C -0.14 -1.55 5.63 -27.15 -0.15 -1.70 16 16 C -0.11 -1.13 5.73 -26.92 -0.15 -1.29 16 17 C -0.61 -6.84 6.35 37.18 0.24 -6.61 16 18 S 2.43 42.75 4.31 -107.50 -0.46 42.28 16 19 O -0.91 -19.16 17.06 -64.33 -1.10 -20.26 16 20 O -0.94 -19.44 18.10 -57.81 -1.05 -20.49 16 21 C 0.38 9.85 6.62 -154.65 -1.02 8.82 16 22 C -0.14 -3.25 7.66 -39.22 -0.30 -3.55 16 23 C -0.08 -1.57 10.17 -39.31 -0.40 -1.97 16 24 C -0.23 -4.40 10.11 -39.40 -0.40 -4.80 16 25 C 0.11 2.31 11.18 -17.56 -0.20 2.11 16 26 N -0.49 -12.66 7.92 -12.34 -0.10 -12.75 16 27 H 0.28 6.31 8.32 -40.82 -0.34 5.97 16 28 H 0.10 1.91 8.01 -51.93 -0.42 1.49 16 29 H 0.08 1.35 8.01 -51.93 -0.42 0.93 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 32 H 0.08 0.90 8.01 -51.93 -0.42 0.48 16 33 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 34 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.13 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.14 3.16 5.63 -52.48 -0.30 2.86 16 37 H 0.12 1.93 8.06 -52.49 -0.42 1.50 16 38 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 39 H 0.14 2.52 8.06 -52.49 -0.42 2.10 16 LS Contribution 330.81 15.07 4.99 4.99 Total: -1.00 -34.21 330.81 -10.02 -44.23 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -4.78 Total: 9.13 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -2.83 Total: -16.02 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.36 Total: -41.90 kcal Atomic # 8 Polarization: -52.49 SS G_CDS: -2.28 Total: -54.77 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.02 Total: 12.06 kcal Atomic # 16 Polarization: 42.75 SS G_CDS: -0.46 Total: 42.28 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.21 -10.02 -44.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892469200.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.735 kcal (2) G-P(sol) polarization free energy of solvation -34.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds